Wall clock time and date at job start Tue Mar 31 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48502 * 109.46931 * 270.00272 * 3 2 1 5 5 H 1.48497 * 109.46787 * 29.99516 * 3 2 1 6 6 H 1.48496 * 109.47262 * 149.99914 * 3 2 1 7 7 C 1.37875 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99787 * 184.49694 * 7 2 1 9 9 C 1.50702 * 120.00502 * 4.49447 * 7 2 1 10 10 C 1.52997 * 115.55221 * 93.24520 * 9 7 2 11 11 N 1.46500 * 109.46920 * 65.32422 * 10 9 7 12 12 C 1.34781 * 119.99902 * 175.21534 * 11 10 9 13 13 O 1.21580 * 120.00004 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99578 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99531 * 185.09866 * 14 12 11 16 16 C 1.53001 * 110.05806 * 63.96898 * 15 14 12 17 17 O 1.42901 * 109.46626 * 53.55473 * 16 15 14 18 18 C 1.54266 * 110.02867 * 185.38960 * 15 14 12 19 19 C 1.54885 * 104.19747 * 95.67284 * 18 15 14 20 20 C 1.54893 * 102.74894 * 37.94064 * 19 18 15 21 21 C 1.53880 * 110.02990 * 302.55381 * 15 14 12 22 22 C 1.52999 * 117.50038 * 238.92119 * 9 7 2 23 23 C 1.53000 * 117.49720 * 307.57895 * 9 7 2 24 24 H 0.96995 * 120.00258 * 5.00355 * 1 2 3 25 25 H 1.08999 * 109.47074 * 305.32727 * 10 9 7 26 26 H 1.08999 * 109.47453 * 185.32472 * 10 9 7 27 27 H 0.97003 * 120.00103 * 355.20841 * 11 10 9 28 28 H 0.96995 * 120.00137 * 5.09945 * 14 12 11 29 29 H 1.08999 * 109.47016 * 173.55638 * 16 15 14 30 30 H 1.09004 * 109.47076 * 293.56120 * 16 15 14 31 31 H 0.96703 * 113.99661 * 179.97438 * 17 16 15 32 32 H 1.09004 * 110.47871 * 214.35020 * 18 15 14 33 33 H 1.08996 * 110.48700 * 336.99092 * 18 15 14 34 34 H 1.09002 * 110.75750 * 279.62769 * 19 18 15 35 35 H 1.08999 * 110.75598 * 156.25530 * 19 18 15 36 36 H 1.08999 * 110.48669 * 203.37926 * 20 19 18 37 37 H 1.09000 * 110.48436 * 80.73653 * 20 19 18 38 38 H 1.09001 * 110.02920 * 359.97438 * 21 15 14 39 39 H 1.08996 * 110.03323 * 121.43110 * 21 15 14 40 40 H 1.08996 * 117.49735 * 214.99925 * 22 9 7 41 41 H 1.08997 * 117.49769 * 0.02562 * 22 9 7 42 42 H 1.09007 * 117.49595 * 359.97401 * 23 9 7 43 43 H 1.08997 * 117.50055 * 144.96720 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0820 -1.1955 0.0739 9 6 1.2545 -2.4972 -0.1012 10 6 1.0872 -3.0537 -1.5165 11 7 2.4005 -3.4090 -2.0599 12 6 2.4918 -4.0112 -3.2622 13 8 1.4843 -4.2591 -3.8960 14 7 3.7000 -4.3385 -3.7619 15 6 3.8081 -4.8904 -5.1147 16 6 3.3471 -3.8548 -6.1423 17 8 4.0656 -2.6355 -5.9449 18 6 5.2659 -5.3061 -5.4008 19 6 5.3008 -6.8194 -5.0726 20 6 3.9256 -7.3125 -5.5872 21 6 2.9559 -6.1662 -5.2331 22 6 1.4298 -3.5040 1.0375 23 6 0.1143 -2.7354 0.8908 24 1 -0.4850 0.8368 -0.0733 25 1 0.6236 -2.2986 -2.1513 26 1 0.4546 -3.9408 -1.4858 27 1 3.2043 -3.2107 -1.5544 28 1 4.4979 -4.2088 -3.2258 29 1 3.5379 -4.2305 -7.1475 30 1 2.2796 -3.6714 -6.0194 31 1 3.8243 -1.9323 -6.5633 32 1 5.5118 -5.1373 -6.4492 33 1 5.9524 -4.7596 -4.7542 34 1 5.3913 -6.9797 -3.9982 35 1 6.1127 -7.3121 -5.6075 36 1 3.6339 -8.2303 -5.0765 37 1 3.9552 -7.4678 -6.6657 38 1 2.4623 -6.3748 -4.2840 39 1 2.2138 -6.0475 -6.0226 40 1 1.4260 -4.5626 0.7783 41 1 2.0873 -3.2235 1.8604 42 1 -0.0931 -1.9495 1.6173 43 1 -0.7552 -3.2880 0.5350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331641792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:01 Heat of formation + Delta-G solvation = -65.347445 kcal Electronic energy + Delta-G solvation = -23182.089311 eV Core-core repulsion = 19841.588423 eV Total energy + Delta-G solvation = -3340.500887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17192 -38.07162 -36.53807 -36.01837 -33.31185 -32.88691 -31.86379 -29.09736 -28.80919 -26.11928 -25.03397 -24.21493 -21.17821 -20.97616 -20.53018 -19.49798 -18.99381 -17.55447 -17.20661 -16.32786 -15.84284 -15.45200 -14.78769 -14.72623 -14.57338 -14.31563 -13.86721 -13.63633 -13.23985 -13.14467 -12.56894 -12.31965 -12.08373 -11.62173 -11.48565 -11.29457 -11.21521 -11.12001 -10.98679 -10.85935 -10.84254 -10.63265 -10.49996 -10.15711 -9.94862 -9.50058 -9.31708 -9.03706 -8.69129 -8.38992 -8.16524 -7.92692 -6.03839 -4.12835 3.27138 3.29278 3.36352 3.37914 3.86793 4.18872 4.39006 4.51488 4.59101 4.83049 4.92785 5.21267 5.23004 5.39226 5.40048 5.46374 5.47400 5.52324 5.64219 5.73650 5.82148 5.90708 5.98963 6.06369 6.09816 6.20857 6.38102 6.41969 6.52425 6.63955 6.76928 6.88978 6.99360 7.19860 7.40535 7.46767 7.57665 7.71681 7.72995 7.84035 8.38831 8.75374 8.88482 9.29588 9.53819 11.03159 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.004551 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.009494 B = 6151.050887 C = 6823.757974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.018 3.982 10 C 0.184 3.816 11 N -0.722 5.722 12 C 0.702 3.298 13 O -0.606 6.606 14 N -0.735 5.735 15 C 0.200 3.800 16 C 0.067 3.933 17 O -0.565 6.565 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.118 4.118 22 C -0.213 4.213 23 C -0.134 4.134 24 H 0.260 0.740 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.396 0.604 28 H 0.393 0.607 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.375 0.625 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.393 -10.833 -10.791 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.017 3.983 10 C 0.060 3.940 11 N -0.374 5.374 12 C 0.402 3.598 13 O -0.486 6.486 14 N -0.391 5.391 15 C 0.113 3.887 16 C -0.012 4.012 17 O -0.370 6.370 18 C -0.156 4.156 19 C -0.163 4.163 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.250 4.250 23 C -0.172 4.172 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.229 0.771 28 H 0.226 0.774 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.221 0.779 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.531 -11.248 -10.803 17.776 hybrid contribution 0.787 1.546 -0.047 1.735 sum 9.317 -9.702 -10.850 17.281 Atomic orbital electron populations 1.70014 1.05820 1.26803 1.48641 1.24969 0.94819 0.98920 0.94351 0.86647 0.79879 0.83665 0.78145 1.20641 1.21294 1.19894 1.20337 0.92457 0.88719 1.51675 0.92358 1.19087 0.99657 0.93793 0.85748 1.20832 0.81319 0.96778 0.95034 1.45164 1.11077 1.62459 1.18748 1.16010 0.83434 0.78578 0.81754 1.90825 1.35117 1.61632 1.61020 1.45121 1.07696 1.70147 1.16117 1.20673 0.95151 0.91553 0.81349 1.22731 0.96775 0.85211 0.96496 1.86478 1.66042 1.23386 1.61054 1.22579 0.94818 0.95930 1.02276 1.22534 0.97252 0.95289 1.01258 1.22419 0.95072 0.98271 1.00643 1.22431 0.97377 0.92379 1.03466 1.23045 1.02573 0.95453 1.03973 1.22438 0.90005 1.00713 1.04048 0.92973 0.92247 0.94469 0.77102 0.77368 0.93722 0.91859 0.77931 0.90394 0.90777 0.91310 0.91520 0.91613 0.91751 0.90061 0.91178 0.91917 0.90516 0.88955 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.53 11.93 55.43 0.66 -23.87 16 2 C 0.07 1.96 5.41 -17.82 -0.10 1.87 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.49 -12.94 8.65 -34.44 -0.30 -13.23 16 8 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 9 C 0.02 0.43 1.62 -155.66 -0.25 0.18 16 10 C 0.18 4.25 5.50 -4.04 -0.02 4.23 16 11 N -0.72 -14.41 5.49 -65.23 -0.36 -14.76 16 12 C 0.70 13.47 7.72 -86.91 -0.67 12.80 16 13 O -0.61 -13.35 13.54 5.30 0.07 -13.28 16 14 N -0.73 -11.01 4.85 -51.36 -0.25 -11.26 16 15 C 0.20 2.61 0.70 -130.69 -0.09 2.51 16 16 C 0.07 0.90 5.39 37.16 0.20 1.10 16 17 O -0.57 -7.75 13.26 -35.23 -0.47 -8.22 16 18 C -0.12 -1.20 5.89 -25.07 -0.15 -1.34 16 19 C -0.13 -1.12 6.91 -24.74 -0.17 -1.30 16 20 C -0.13 -1.22 6.83 -25.07 -0.17 -1.39 16 21 C -0.12 -1.51 5.14 -25.61 -0.13 -1.64 16 22 C -0.21 -4.57 9.96 -26.70 -0.27 -4.84 16 23 C -0.13 -3.16 8.86 -26.70 -0.24 -3.39 16 24 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 25 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 27 H 0.40 7.34 8.36 -40.82 -0.34 7.00 16 28 H 0.39 5.14 8.25 -40.82 -0.34 4.81 16 29 H 0.04 0.48 8.00 -51.93 -0.42 0.07 16 30 H 0.06 1.03 6.86 -51.93 -0.36 0.67 16 31 H 0.37 3.69 9.12 45.56 0.42 4.11 16 32 H 0.08 0.73 7.76 -51.93 -0.40 0.32 16 33 H 0.07 0.75 7.70 -51.93 -0.40 0.35 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.26 6.85 -51.93 -0.36 0.90 16 39 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.09 2.36 7.66 -51.92 -0.40 1.96 16 43 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -30.85 346.10 -8.84 -39.69 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -6.34 Total: 15.08 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.35 Total: -4.46 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.05 Total: -49.90 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.40 Total: -21.50 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.85 -8.84 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331641792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.660 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds