Wall clock time and date at job start Tue Mar 31 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99991 * 2 1 4 4 H 1.48499 * 109.46777 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47360 * 300.00287 * 3 2 1 6 6 H 1.48504 * 109.46905 * 60.00465 * 3 2 1 7 7 C 1.37880 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99817 * 170.57333 * 7 2 1 9 9 C 1.50697 * 119.99937 * 350.56909 * 7 2 1 10 10 C 1.53004 * 115.55098 * 325.16660 * 9 7 2 11 11 N 1.46504 * 109.46800 * 306.52690 * 10 9 7 12 12 C 1.34778 * 119.99723 * 183.81521 * 11 10 9 13 13 O 1.21585 * 120.00098 * 5.69914 * 12 11 10 14 14 N 1.34780 * 119.99932 * 185.70096 * 12 11 10 15 15 C 1.47024 * 125.64721 * 354.55098 * 14 12 11 16 16 C 1.54319 * 107.27097 * 178.98704 * 15 14 12 17 17 C 1.55156 * 102.94471 * 337.80624 * 16 15 14 18 18 H 1.08998 * 111.00755 * 277.43236 * 17 16 15 19 19 C 1.52996 * 111.00643 * 153.61217 * 17 16 15 20 20 C 1.52998 * 109.47447 * 178.18363 * 19 17 16 21 21 O 1.42898 * 109.47388 * 180.02562 * 20 19 17 22 22 C 1.47423 * 125.65262 * 174.60405 * 14 12 11 23 23 C 1.52999 * 117.50042 * 110.83869 * 9 7 2 24 24 C 1.53004 * 117.49864 * 179.49820 * 9 7 2 25 25 H 0.96996 * 120.00094 * 5.02007 * 1 2 3 26 26 H 1.08997 * 109.47057 * 186.53591 * 10 9 7 27 27 H 1.08995 * 109.47034 * 66.52746 * 10 9 7 28 28 H 0.97003 * 120.00099 * 3.82087 * 11 10 9 29 29 H 1.09002 * 109.88229 * 59.57008 * 15 14 12 30 30 H 1.09000 * 109.88461 * 298.40386 * 15 14 12 31 31 H 1.09002 * 110.72490 * 219.44366 * 16 15 14 32 32 H 1.09000 * 110.72244 * 96.17381 * 16 15 14 33 33 H 1.09004 * 109.47129 * 298.18184 * 19 17 16 34 34 H 1.09007 * 109.47198 * 58.18167 * 19 17 16 35 35 H 1.09004 * 109.46810 * 300.00016 * 20 19 17 36 36 H 1.09001 * 109.47326 * 59.99324 * 20 19 17 37 37 H 0.96705 * 113.99543 * 179.97438 * 21 20 19 38 38 H 1.09005 * 110.36503 * 85.24168 * 22 14 12 39 39 H 1.09006 * 110.36652 * 322.92729 * 22 14 12 40 40 H 1.09009 * 117.49897 * 215.00476 * 23 9 7 41 41 H 1.08996 * 117.49806 * 0.02562 * 23 9 7 42 42 H 1.08997 * 117.50008 * 359.97089 * 24 9 7 43 43 H 1.08995 * 117.50098 * 144.97418 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0736 -1.2003 -0.1537 9 6 1.2663 -2.4904 0.2127 10 6 0.0803 -2.4235 1.1771 11 7 0.5182 -1.8460 2.4503 12 6 -0.3436 -1.7597 3.4829 13 8 -1.4510 -2.2536 3.3934 14 7 0.0221 -1.1257 4.6146 15 6 1.3592 -0.5853 4.9003 16 6 1.2999 0.0703 6.2960 17 6 -0.2132 0.3605 6.4797 18 1 -0.4955 1.2903 5.9859 19 6 -0.5891 0.3942 7.9623 20 6 -2.0758 0.7269 8.1042 21 8 -2.4267 0.7591 9.4890 22 6 -0.8520 -0.8603 5.7717 23 6 1.1555 -3.4445 -0.9782 24 6 2.0859 -3.7822 0.1895 25 1 -0.4850 0.8368 -0.0735 26 1 -0.3062 -3.4282 1.3478 27 1 -0.7036 -1.8008 0.7461 28 1 1.4284 -1.5257 2.5500 29 1 1.6253 0.1607 4.1513 30 1 2.0927 -1.3915 4.9003 31 1 1.8748 0.9963 6.3120 32 1 1.6561 -0.6191 7.0614 33 1 -0.3905 -0.5797 8.4098 34 1 0.0035 1.1552 8.4702 35 1 -2.2744 1.7008 7.6567 36 1 -2.6685 -0.0339 7.5962 37 1 -3.3570 0.9650 9.6542 38 1 -0.8681 -1.7210 6.4403 39 1 -1.8613 -0.6197 5.4374 40 1 0.2376 -4.0245 -1.0747 41 1 1.6169 -3.1348 -1.9158 42 1 3.1590 -3.6945 0.0195 43 1 1.7804 -4.5842 0.8614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331856031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:15 Heat of formation + Delta-G solvation = -60.877248 kcal Electronic energy + Delta-G solvation = -22912.642035 eV Core-core repulsion = 19572.334990 eV Total energy + Delta-G solvation = -3340.307045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.76422 -37.95869 -36.92658 -36.38154 -33.31825 -32.65210 -32.14034 -29.95463 -27.75700 -25.92867 -25.21868 -23.50063 -22.06547 -21.20354 -20.33473 -19.24846 -19.15223 -17.75697 -17.29059 -16.47228 -15.89558 -15.40393 -15.02954 -14.80615 -14.38429 -14.12677 -13.98465 -13.41506 -13.18014 -13.03976 -12.74165 -12.42695 -12.23307 -12.02843 -11.70357 -11.59244 -11.41774 -11.13384 -11.07639 -10.77100 -10.75710 -10.69755 -10.50967 -10.26668 -10.13712 -9.67408 -9.28752 -9.10150 -8.82419 -8.33828 -8.19602 -7.65389 -6.06089 -4.18249 3.16783 3.25522 3.27695 3.30300 3.92320 3.99936 4.27410 4.44433 4.61783 4.78213 4.84543 5.00887 5.04502 5.17113 5.25392 5.34167 5.36860 5.50978 5.58011 5.70366 5.81663 5.85835 5.88640 5.95586 6.04298 6.09774 6.24198 6.33451 6.57619 6.64155 6.64672 6.75967 6.92782 7.10148 7.29115 7.37855 7.57000 7.69782 7.79816 7.94866 8.33103 8.76004 8.93345 9.42559 9.46352 10.89080 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.004539 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.772436 B = 6166.716654 C = 6869.040761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.181 3.819 11 N -0.703 5.703 12 C 0.718 3.282 13 O -0.607 6.607 14 N -0.644 5.644 15 C 0.101 3.899 16 C -0.122 4.122 17 C -0.103 4.103 18 H 0.087 0.913 19 C -0.105 4.105 20 C 0.071 3.929 21 O -0.578 6.578 22 C 0.134 3.866 23 C -0.196 4.196 24 C -0.212 4.212 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.105 0.895 28 H 0.396 0.604 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.379 0.621 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 2.611 14.089 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.037 3.963 10 C 0.057 3.943 11 N -0.354 5.354 12 C 0.419 3.581 13 O -0.488 6.488 14 N -0.385 5.385 15 C -0.023 4.023 16 C -0.160 4.160 17 C -0.122 4.122 18 H 0.105 0.895 19 C -0.143 4.143 20 C -0.006 4.006 21 O -0.383 6.383 22 C 0.010 3.990 23 C -0.234 4.234 24 C -0.249 4.249 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.123 0.877 28 H 0.230 0.770 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.226 0.774 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.258 2.187 13.995 14.167 hybrid contribution 0.370 1.193 -0.291 1.283 sum 0.112 3.380 13.704 14.115 Atomic orbital electron populations 1.69873 1.05858 1.26713 1.47594 1.24973 0.94719 0.98949 0.94191 0.86592 0.80244 0.83765 0.77827 1.19618 1.20936 1.20872 1.20521 0.93699 0.88843 1.50585 0.92027 1.19201 0.94093 0.89011 0.93959 1.20871 0.97889 0.95086 0.80441 1.44940 1.13999 1.64924 1.11569 1.15518 0.84430 0.79089 0.79018 1.90831 1.21844 1.53819 1.82257 1.47502 1.11930 1.62245 1.16792 1.21925 0.85574 0.98074 0.96737 1.22633 0.95777 1.01157 0.96411 1.22348 0.95874 0.99140 0.94847 0.89510 1.21419 0.94724 1.03121 0.95027 1.22269 0.96425 0.99957 0.81965 1.86448 1.32061 1.94485 1.25348 1.21995 0.94603 0.95836 0.86590 1.22916 0.99654 1.06711 0.94136 1.22956 0.96879 1.02048 1.03065 0.92750 0.95823 0.87698 0.76981 0.91452 0.91771 0.90082 0.90486 0.90824 0.90817 0.93557 0.93160 0.77425 0.92202 0.90921 0.91483 0.90216 0.90681 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.20 10.70 55.43 0.59 -22.60 16 2 C 0.08 1.95 5.14 -17.82 -0.09 1.86 16 3 Si 0.89 19.79 29.55 -169.99 -5.02 14.77 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.50 -12.68 8.27 -34.44 -0.28 -12.96 16 8 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 9 C 0.04 0.91 2.01 -155.66 -0.31 0.60 16 10 C 0.18 4.40 4.73 -4.04 -0.02 4.38 16 11 N -0.70 -15.75 5.23 -65.22 -0.34 -16.09 16 12 C 0.72 15.94 8.47 -86.91 -0.74 15.20 16 13 O -0.61 -15.55 16.64 5.29 0.09 -15.46 16 14 N -0.64 -11.29 3.33 -176.24 -0.59 -11.88 16 15 C 0.10 1.41 6.18 -3.07 -0.02 1.39 16 16 C -0.12 -1.27 6.42 -24.90 -0.16 -1.43 16 17 C -0.10 -1.12 3.04 -88.48 -0.27 -1.39 16 18 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.10 -0.99 5.10 -26.73 -0.14 -1.13 16 20 C 0.07 0.66 6.92 37.16 0.26 0.92 16 21 O -0.58 -5.49 13.66 -35.23 -0.48 -5.97 16 22 C 0.13 1.91 5.69 -2.53 -0.01 1.90 16 23 C -0.20 -4.35 9.96 -26.69 -0.27 -4.62 16 24 C -0.21 -4.49 9.92 -26.69 -0.26 -4.76 16 25 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 26 H 0.02 0.58 8.06 -51.93 -0.42 0.16 16 27 H 0.11 2.90 6.03 -51.93 -0.31 2.59 16 28 H 0.40 8.46 6.89 -40.82 -0.28 8.18 16 29 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 33 H 0.07 0.71 8.04 -51.93 -0.42 0.30 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.47 7.60 -51.93 -0.39 0.07 16 37 H 0.38 1.92 9.12 45.56 0.42 2.34 16 38 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 39 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 40 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -31.06 349.58 -9.23 -40.28 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.43 Total: 11.72 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.32 Total: -0.04 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.33 Total: -50.57 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.39 Total: -21.43 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.06 -9.23 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331856031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.593 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds