Wall clock time and date at job start Tue Mar 31 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00336 * 2 1 4 4 H 1.48497 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46889 * 299.99892 * 3 2 1 6 6 H 1.48506 * 109.47310 * 59.99512 * 3 2 1 7 7 C 1.37882 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99624 * 171.91918 * 7 2 1 9 9 C 1.50692 * 120.00123 * 351.92224 * 7 2 1 10 10 C 1.53007 * 115.55091 * 325.13494 * 9 7 2 11 11 N 1.46502 * 109.47057 * 306.63680 * 10 9 7 12 12 C 1.34771 * 120.00404 * 183.95080 * 11 10 9 13 13 O 1.21590 * 119.99758 * 5.65924 * 12 11 10 14 14 N 1.34773 * 120.00381 * 185.65625 * 12 11 10 15 15 C 1.47017 * 125.64752 * 354.61866 * 14 12 11 16 16 C 1.54329 * 107.27238 * 181.09284 * 15 14 12 17 17 C 1.55159 * 102.94109 * 22.19358 * 16 15 14 18 18 H 1.08999 * 111.03539 * 82.58473 * 17 16 15 19 19 C 1.53000 * 111.00347 * 206.42395 * 17 16 15 20 20 C 1.53002 * 109.46723 * 178.65096 * 19 17 16 21 21 O 1.42896 * 109.46929 * 180.02562 * 20 19 17 22 22 C 1.47425 * 125.65033 * 174.65916 * 14 12 11 23 23 C 1.53002 * 117.50172 * 110.80515 * 9 7 2 24 24 C 1.52995 * 117.49945 * 179.46627 * 9 7 2 25 25 H 0.97008 * 119.99639 * 5.02923 * 1 2 3 26 26 H 1.09001 * 109.47396 * 186.63879 * 10 9 7 27 27 H 1.08999 * 109.46859 * 66.63413 * 10 9 7 28 28 H 0.97003 * 119.99863 * 3.94892 * 11 10 9 29 29 H 1.08996 * 109.88708 * 300.51059 * 15 14 12 30 30 H 1.09002 * 109.88164 * 61.68107 * 15 14 12 31 31 H 1.08996 * 110.72046 * 263.83142 * 16 15 14 32 32 H 1.09000 * 110.71858 * 140.55958 * 16 15 14 33 33 H 1.08996 * 109.47192 * 58.65172 * 19 17 16 34 34 H 1.08997 * 109.46906 * 298.64477 * 19 17 16 35 35 H 1.08996 * 109.47225 * 60.00096 * 20 19 17 36 36 H 1.08995 * 109.47319 * 299.99725 * 20 19 17 37 37 H 0.96696 * 114.00316 * 180.02562 * 21 20 19 38 38 H 1.09004 * 110.36550 * 36.99990 * 22 14 12 39 39 H 1.09002 * 110.37025 * 274.68019 * 22 14 12 40 40 H 1.09002 * 117.49848 * 215.00304 * 23 9 7 41 41 H 1.08999 * 117.49585 * 0.02562 * 23 9 7 42 42 H 1.09004 * 117.49861 * 359.97438 * 24 9 7 43 43 H 1.09008 * 117.50031 * 144.99649 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0765 -1.1988 -0.1309 9 6 1.2622 -2.4926 0.1845 10 6 0.0571 -2.4362 1.1256 11 7 0.4689 -1.8707 2.4128 12 6 -0.4126 -1.7977 3.4297 13 8 -1.5167 -2.2935 3.3139 14 7 -0.0702 -1.1752 4.5750 15 6 1.2594 -0.6334 4.8913 16 6 1.1862 -0.0413 6.3146 17 6 -0.0230 -0.7863 6.9392 18 1 0.2732 -1.7646 7.3177 19 6 -0.6732 0.0514 8.0421 20 6 -1.8791 -0.7001 8.6094 21 8 -2.4867 0.0825 9.6391 22 6 -0.9666 -0.9257 5.7185 23 6 1.1752 -3.4333 -1.0190 24 6 2.0820 -3.7842 0.1632 25 1 -0.4850 0.8369 -0.0736 26 1 -0.3317 -3.4429 1.2789 27 1 -0.7188 -1.8101 0.6852 28 1 1.3760 -1.5487 2.5332 29 1 2.0019 -1.4307 4.8593 30 1 1.5206 0.1481 4.1778 31 1 1.0001 1.0320 6.2767 32 1 2.0998 -0.2560 6.8691 33 1 -1.0010 1.0050 7.6285 34 1 0.0507 0.2297 8.8373 35 1 -1.5512 -1.6538 9.0230 36 1 -2.6030 -0.8786 7.8143 37 1 -3.2594 -0.3335 10.0452 38 1 -1.6461 -1.7664 5.8584 39 1 -1.5284 -0.0041 5.5661 40 1 0.2594 -4.0120 -1.1403 41 1 1.6552 -3.1131 -1.9437 42 1 3.1583 -3.6947 0.0157 43 1 1.7629 -4.5938 0.8196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331856047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:18 Heat of formation + Delta-G solvation = -60.707736 kcal Electronic energy + Delta-G solvation = -22890.720805 eV Core-core repulsion = 19550.421111 eV Total energy + Delta-G solvation = -3340.299695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.76501 -37.96212 -36.92761 -36.37900 -33.31904 -32.64962 -32.13140 -29.96037 -27.73720 -25.92002 -25.21901 -23.52923 -22.05787 -21.20431 -20.33001 -19.24388 -19.14344 -17.76165 -17.31213 -16.44059 -15.92756 -15.39039 -15.00201 -14.76305 -14.42241 -14.16268 -13.91703 -13.50007 -13.25473 -12.92516 -12.73432 -12.34508 -12.30190 -12.04115 -11.68289 -11.61342 -11.40565 -11.12972 -11.07758 -10.76742 -10.75896 -10.69389 -10.50700 -10.26220 -10.14385 -9.67368 -9.28731 -9.08003 -8.82770 -8.33025 -8.19483 -7.64878 -6.04640 -4.18142 3.17884 3.26235 3.28817 3.31120 3.90432 4.03146 4.28167 4.42184 4.61580 4.78666 4.83687 5.00233 5.05593 5.17462 5.24405 5.32179 5.36213 5.51078 5.56954 5.70099 5.83045 5.85768 5.89918 5.95463 6.04439 6.10129 6.23447 6.33456 6.57710 6.64275 6.64487 6.76211 6.92730 7.10533 7.28952 7.37662 7.57679 7.70738 7.80521 7.95941 8.33333 8.76500 8.94212 9.43152 9.47212 10.89735 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.004441 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.892375 B = 6302.713302 C = 7004.325981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.076 3.924 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.061 0.939 9 C 0.038 3.962 10 C 0.181 3.819 11 N -0.702 5.702 12 C 0.718 3.282 13 O -0.608 6.608 14 N -0.644 5.644 15 C 0.101 3.899 16 C -0.122 4.122 17 C -0.101 4.101 18 H 0.086 0.914 19 C -0.106 4.106 20 C 0.072 3.928 21 O -0.578 6.578 22 C 0.132 3.868 23 C -0.196 4.196 24 C -0.212 4.212 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.106 0.894 28 H 0.396 0.604 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.379 0.621 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 -0.208 15.210 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.129 4.129 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.037 3.963 10 C 0.057 3.943 11 N -0.353 5.353 12 C 0.420 3.580 13 O -0.488 6.488 14 N -0.385 5.385 15 C -0.023 4.023 16 C -0.160 4.160 17 C -0.121 4.121 18 H 0.104 0.896 19 C -0.144 4.144 20 C -0.006 4.006 21 O -0.383 6.383 22 C 0.008 3.992 23 C -0.235 4.235 24 C -0.250 4.250 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.123 0.877 28 H 0.230 0.770 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.226 0.774 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.048 -0.065 14.867 14.867 hybrid contribution 0.531 0.616 -0.042 0.815 sum 0.579 0.551 14.825 14.847 Atomic orbital electron populations 1.69874 1.05835 1.26714 1.47639 1.24979 0.94741 0.98967 0.94185 0.86583 0.80191 0.83739 0.77848 1.19640 1.20920 1.20859 1.20525 0.93375 0.88760 1.50983 0.92040 1.19203 0.93975 0.89083 0.94000 1.20878 0.97956 0.95156 0.80259 1.44925 1.13717 1.65178 1.11514 1.15514 0.84464 0.79007 0.79051 1.90829 1.22312 1.53776 1.81909 1.47487 1.11818 1.62573 1.16582 1.21918 0.85765 0.98251 0.96346 1.22644 0.98294 1.00333 0.94757 1.22337 0.95820 0.99620 0.94298 0.89593 1.21428 0.96341 0.99184 0.97459 1.22264 0.95065 0.93509 0.89740 1.86452 1.48510 1.48875 1.54478 1.22012 0.92517 1.01074 0.83608 1.22917 0.99874 1.06721 0.93943 1.22957 0.97004 1.01880 1.03110 0.92736 0.95881 0.87651 0.76989 0.91809 0.91434 0.90440 0.90091 0.90779 0.90827 0.93609 0.93142 0.77435 0.90802 0.92149 0.91480 0.90218 0.90685 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.30 10.65 55.43 0.59 -22.71 16 2 C 0.08 1.95 5.15 -17.82 -0.09 1.85 16 3 Si 0.89 19.91 29.55 -169.99 -5.02 14.89 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.50 -12.70 8.27 -34.44 -0.28 -12.99 16 8 H 0.06 1.57 7.83 -52.48 -0.41 1.16 16 9 C 0.04 0.91 2.02 -155.66 -0.31 0.60 16 10 C 0.18 4.42 4.71 -4.04 -0.02 4.40 16 11 N -0.70 -15.76 5.23 -65.22 -0.34 -16.10 16 12 C 0.72 15.96 8.47 -86.93 -0.74 15.22 16 13 O -0.61 -15.56 16.56 5.29 0.09 -15.47 16 14 N -0.64 -11.30 3.33 -176.24 -0.59 -11.89 16 15 C 0.10 1.41 6.16 -3.06 -0.02 1.39 16 16 C -0.12 -1.27 6.42 -24.89 -0.16 -1.43 16 17 C -0.10 -1.06 3.07 -88.47 -0.27 -1.33 16 18 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.11 -1.00 5.10 -26.73 -0.14 -1.13 16 20 C 0.07 0.65 6.90 37.16 0.26 0.90 16 21 O -0.58 -5.47 13.66 -35.23 -0.48 -5.95 16 22 C 0.13 1.89 5.59 -2.53 -0.01 1.87 16 23 C -0.20 -4.36 9.96 -26.69 -0.27 -4.62 16 24 C -0.21 -4.49 9.92 -26.70 -0.26 -4.75 16 25 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 26 H 0.02 0.56 8.05 -51.93 -0.42 0.14 16 27 H 0.11 2.92 6.02 -51.93 -0.31 2.61 16 28 H 0.40 8.49 6.91 -40.82 -0.28 8.20 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.46 7.46 -51.93 -0.39 0.08 16 37 H 0.38 1.89 9.12 45.56 0.42 2.30 16 38 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 39 H 0.06 0.88 8.00 -51.93 -0.42 0.46 16 40 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -31.16 349.21 -9.24 -40.39 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.42 Total: 11.59 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.32 Total: -0.02 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.34 Total: -50.69 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.39 Total: -21.42 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.16 -9.24 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331856047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.316 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds