Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99709 * 2 1 4 4 H 1.48502 * 109.47027 * 269.99753 * 3 2 1 5 5 H 1.48492 * 109.47566 * 30.00303 * 3 2 1 6 6 H 1.48502 * 109.47106 * 150.00509 * 3 2 1 7 7 C 1.37873 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99967 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99969 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.34768 * 119.99925 * 180.02562 * 10 9 7 12 12 O 1.21591 * 120.00256 * 5.06967 * 11 10 9 13 13 N 1.34780 * 120.00111 * 185.06973 * 11 10 9 14 14 C 1.46923 * 120.63265 * 174.96241 * 13 11 10 15 15 C 1.53188 * 108.77704 * 233.63048 * 14 13 11 16 16 C 1.53035 * 109.31836 * 305.36636 * 15 14 13 17 17 O 1.42893 * 109.46273 * 181.38173 * 16 15 14 18 18 C 1.42910 * 113.99792 * 149.97473 * 17 16 15 19 19 C 1.53003 * 109.46805 * 180.02562 * 18 17 16 20 20 C 1.53001 * 117.49574 * 243.62015 * 19 18 17 21 21 C 1.53001 * 117.49238 * 174.99970 * 19 18 17 22 22 C 1.53043 * 109.52362 * 61.37232 * 16 15 14 23 23 C 1.46924 * 120.62891 * 354.99267 * 13 11 10 24 24 H 0.96997 * 119.99932 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47034 * 60.00092 * 9 7 2 26 26 H 1.08999 * 109.46833 * 299.99761 * 9 7 2 27 27 H 0.96999 * 120.00076 * 359.97438 * 10 9 7 28 28 H 1.09006 * 109.58150 * 113.84358 * 14 13 11 29 29 H 1.09001 * 109.70706 * 353.49210 * 14 13 11 30 30 H 1.09002 * 109.49770 * 185.41456 * 15 14 13 31 31 H 1.09007 * 109.52359 * 65.33852 * 15 14 13 32 32 H 1.09003 * 109.45851 * 301.36407 * 16 15 14 33 33 H 1.08992 * 109.47275 * 60.00084 * 18 17 16 34 34 H 1.09003 * 109.46978 * 300.00091 * 18 17 16 35 35 H 1.09001 * 115.55049 * 29.32999 * 19 18 17 36 36 H 1.08998 * 117.49786 * 0.02562 * 20 19 18 37 37 H 1.09002 * 117.49532 * 145.02558 * 20 19 18 38 38 H 1.09006 * 117.49541 * 214.97780 * 21 19 18 39 39 H 1.08993 * 117.50291 * 0.02562 * 21 19 18 40 40 H 1.08999 * 109.50249 * 58.58092 * 22 16 15 41 41 H 1.08998 * 109.49612 * 178.68463 * 22 16 15 42 42 H 1.09004 * 109.58815 * 246.15498 * 23 13 11 43 43 H 1.09006 * 109.58721 * 6.57244 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1143 -1.9015 0.0914 13 7 5.7751 -4.0876 -0.1066 14 6 7.2138 -4.3638 -0.2190 15 6 7.4539 -5.2317 -1.4582 16 6 6.5781 -6.4840 -1.3767 17 8 6.8234 -7.3115 -2.5156 18 6 6.6417 -8.7075 -2.2696 19 6 6.9302 -9.4927 -3.5507 20 6 5.7733 -10.2752 -4.1753 21 6 6.9047 -11.0200 -3.4638 22 6 5.1033 -6.0759 -1.3513 23 6 4.8364 -5.2179 -0.1105 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 3.3696 -3.3126 -0.0021 28 1 7.5545 -4.8942 0.6703 29 1 7.7614 -3.4265 -0.3175 30 1 8.5032 -5.5237 -1.5001 31 1 7.1977 -4.6662 -2.3542 32 1 6.8178 -7.0362 -0.4680 33 1 5.6144 -8.8902 -1.9546 34 1 7.3254 -9.0300 -1.4844 35 1 7.6547 -9.0391 -4.2271 36 1 4.8066 -10.2302 -3.6738 37 1 5.7364 -10.3364 -5.2630 38 1 7.6121 -11.5713 -4.0835 39 1 6.6820 -11.4654 -2.4943 40 1 4.8690 -5.5021 -2.2479 41 1 4.4793 -6.9689 -1.3168 42 1 4.9832 -5.8180 0.7875 43 1 3.8132 -4.8430 -0.1386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331989490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = -50.552874 kcal Electronic energy + Delta-G solvation = -22162.025042 eV Core-core repulsion = 18822.165695 eV Total energy + Delta-G solvation = -3339.859347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13426 -38.84756 -37.45424 -35.92978 -34.37723 -32.54749 -31.62928 -31.05820 -27.96390 -27.22341 -24.46034 -23.43343 -22.75349 -22.03593 -21.19169 -20.62727 -19.29655 -18.22863 -17.21612 -16.45728 -15.88491 -15.80950 -15.46277 -15.19352 -14.85152 -14.44591 -14.18654 -13.89155 -13.68996 -13.45362 -13.09583 -12.89495 -12.49893 -12.18158 -12.05945 -12.02258 -11.93164 -11.43375 -11.36371 -11.24292 -10.94285 -10.88239 -10.74267 -10.59324 -10.44178 -9.94391 -9.65699 -9.47920 -9.44008 -8.76289 -8.56084 -7.95978 -6.19331 -4.21126 3.05312 3.17135 3.29558 3.36397 3.45445 3.52710 3.78591 4.35720 4.40531 4.45430 4.51691 4.62660 4.65556 4.74135 4.91134 4.96739 5.00393 5.13959 5.16393 5.19677 5.25000 5.30005 5.34857 5.46793 5.51788 5.55665 5.71317 5.72280 5.74353 5.84845 5.92181 6.01052 6.16085 6.64518 6.82679 7.04335 7.13960 7.25813 7.40384 7.51552 8.27054 8.67151 8.80727 9.19446 9.42183 10.92638 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027481 B = 0.003069 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.642628 B = 9121.313272 C = 9808.434745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.723 5.723 11 C 0.700 3.300 12 O -0.601 6.601 13 N -0.638 5.638 14 C 0.135 3.865 15 C -0.131 4.131 16 C 0.094 3.906 17 O -0.378 6.378 18 C 0.093 3.907 19 C -0.153 4.153 20 C -0.177 4.177 21 C -0.176 4.176 22 C -0.156 4.156 23 C 0.115 3.885 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.018 0.982 27 H 0.391 0.609 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.597 -21.240 -3.943 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.114 3.886 10 N -0.377 5.377 11 C 0.401 3.599 12 O -0.480 6.480 13 N -0.377 5.377 14 C 0.011 3.989 15 C -0.169 4.169 16 C 0.037 3.963 17 O -0.298 6.298 18 C 0.016 3.984 19 C -0.171 4.171 20 C -0.214 4.214 21 C -0.213 4.213 22 C -0.195 4.195 23 C -0.009 4.009 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.227 0.773 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.020 -20.308 -4.054 25.008 hybrid contribution -0.209 0.271 0.138 0.369 sum 13.811 -20.037 -3.916 24.648 Atomic orbital electron populations 1.69883 1.06203 1.27403 1.49602 1.24780 0.94790 0.99169 0.93887 0.86808 0.80632 0.83162 0.79057 1.19861 1.20942 1.18396 1.21081 0.88549 0.95150 1.53168 0.90387 1.19373 0.94835 0.77703 0.96655 1.45571 1.03774 1.11054 1.77305 1.16013 0.83639 0.82175 0.78063 1.90850 1.55461 1.42925 1.58783 1.47294 1.06700 1.04628 1.79126 1.21312 0.81053 1.00442 0.96063 1.22033 0.99824 0.95141 0.99921 1.22066 0.94508 0.91407 0.88363 1.87931 1.90190 1.15993 1.35654 1.22023 0.99523 0.81464 0.95385 1.22151 1.02625 0.92750 0.99588 1.23076 0.93945 1.04017 1.00379 1.22975 1.02273 0.93411 1.02614 1.22442 0.96836 1.00421 0.99788 1.21538 0.94102 0.88006 0.97231 0.92288 0.95794 0.96445 0.77279 0.92095 0.88320 0.90266 0.90509 0.92128 0.93177 0.93037 0.86888 0.88589 0.88602 0.88450 0.88691 0.90253 0.90796 0.91586 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.54 -15.04 9.83 -34.44 -0.34 -15.38 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.24 6.00 4.50 -5.19 -0.02 5.97 16 10 N -0.72 -15.37 5.46 -66.41 -0.36 -15.73 16 11 C 0.70 14.28 8.30 -86.92 -0.72 13.56 16 12 O -0.60 -14.46 15.79 5.29 0.08 -14.38 16 13 N -0.64 -9.73 2.97 -178.49 -0.53 -10.26 16 14 C 0.14 1.72 6.41 -3.71 -0.02 1.69 16 15 C -0.13 -1.43 5.73 -26.62 -0.15 -1.59 16 16 C 0.09 0.96 2.57 -26.69 -0.07 0.89 16 17 O -0.38 -4.14 9.99 -35.23 -0.35 -4.49 16 18 C 0.09 0.79 6.03 37.16 0.22 1.01 16 19 C -0.15 -1.21 6.06 -90.62 -0.55 -1.76 16 20 C -0.18 -1.25 10.18 -26.73 -0.27 -1.52 16 21 C -0.18 -1.09 10.25 -26.73 -0.27 -1.37 16 22 C -0.16 -1.67 5.69 -26.61 -0.15 -1.82 16 23 C 0.12 1.37 6.43 -3.71 -0.02 1.34 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 26 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 27 H 0.39 7.36 5.78 -40.82 -0.24 7.13 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.43 7.04 -51.93 -0.37 1.07 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 33 H 0.05 0.40 7.58 -51.93 -0.39 0.00 16 34 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.07 5.57 -51.93 -0.29 0.78 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -33.03 345.75 -9.40 -42.43 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.08 Total: 2.93 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.47 Total: 3.16 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.12 Total: -51.90 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.27 Total: -18.87 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.03 -9.40 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331989490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.126 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds