Wall clock time and date at job start Tue Mar 31 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99449 * 179.97438 * 13 11 10 15 15 H 1.09001 * 110.04310 * 35.00511 * 14 13 11 16 16 C 1.54362 * 110.05917 * 273.54473 * 14 13 11 17 17 C 1.54911 * 104.20412 * 264.30905 * 16 14 13 18 18 C 1.54960 * 102.79590 * 322.24530 * 17 16 14 19 19 C 1.53526 * 110.05202 * 156.51006 * 14 13 11 20 20 C 1.52795 * 110.08324 * 359.90227 * 19 14 13 21 21 C 1.53166 * 109.16779 * 182.48947 * 20 19 14 22 22 O 1.42905 * 109.37012 * 56.93298 * 21 20 19 23 23 C 1.42911 * 114.19763 * 298.50666 * 22 21 20 24 24 C 1.52782 * 110.09996 * 238.44549 * 19 14 13 25 25 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 29 29 H 0.96992 * 119.99896 * 0.02562 * 13 11 10 30 30 H 1.09003 * 110.48006 * 22.99341 * 16 14 13 31 31 H 1.09002 * 110.48079 * 145.49397 * 16 14 13 32 32 H 1.09000 * 110.75221 * 80.57476 * 17 16 14 33 33 H 1.09002 * 110.74515 * 203.73754 * 17 16 14 34 34 H 1.09010 * 110.50428 * 156.31307 * 18 17 16 35 35 H 1.08997 * 110.50532 * 279.00162 * 18 17 16 36 36 H 1.09002 * 109.51562 * 302.39647 * 20 19 14 37 37 H 1.08996 * 109.52064 * 62.58153 * 20 19 14 38 38 H 1.09005 * 109.49180 * 296.96446 * 21 20 19 39 39 H 1.09008 * 109.50799 * 176.91178 * 21 20 19 40 40 H 1.09005 * 109.48735 * 301.52539 * 23 22 21 41 41 H 1.08995 * 109.50849 * 181.47654 * 23 22 21 42 42 H 1.09002 * 109.51930 * 297.41535 * 24 19 14 43 43 H 1.09002 * 109.52456 * 57.53551 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1150 -1.8977 0.0004 13 7 5.7739 -4.0926 -0.0008 14 6 7.2143 -4.3603 -0.0014 15 1 7.7351 -3.6041 0.5861 16 6 7.7507 -4.3683 -1.4488 17 6 7.7472 -5.8653 -1.8471 18 6 8.1810 -6.5701 -0.5371 19 6 7.4904 -5.7571 0.5728 20 6 6.1772 -6.4309 0.9679 21 6 6.4806 -7.7952 1.5945 22 8 7.3541 -7.6198 2.7118 23 6 8.6218 -7.0493 2.3804 24 6 8.4108 -5.6528 1.7878 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6798 -0.8895 27 1 3.8745 -0.6810 0.8905 28 1 3.3694 -3.3127 -0.0009 29 1 5.1436 -4.8297 -0.0016 30 1 7.0914 -3.7979 -2.1031 31 1 8.7627 -3.9648 -1.4828 32 1 6.7479 -6.1836 -2.1442 33 1 8.4643 -6.0540 -2.6461 34 1 7.8334 -7.6032 -0.5261 35 1 9.2642 -6.5295 -0.4223 36 1 5.6508 -5.8071 1.6904 37 1 5.5567 -6.5668 0.0821 38 1 6.9603 -8.4365 0.8551 39 1 5.5514 -8.2571 1.9284 40 1 9.1255 -7.6822 1.6497 41 1 9.2334 -6.9743 3.2795 42 1 9.3713 -5.2377 1.4825 43 1 7.9548 -5.0039 2.5356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334328328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:40 Heat of formation + Delta-G solvation = -85.723603 kcal Electronic energy + Delta-G solvation = -23198.232383 eV Core-core repulsion = 19856.847919 eV Total energy + Delta-G solvation = -3341.384464 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.01346 -39.03839 -37.29995 -34.22947 -33.36231 -32.35290 -32.20315 -31.44166 -28.49462 -26.99363 -26.08020 -24.10722 -22.72705 -22.16145 -20.69772 -19.86765 -18.65276 -18.22226 -16.86424 -16.35047 -16.21064 -15.95962 -15.38976 -15.09446 -14.67946 -14.44911 -14.30149 -14.12411 -13.56740 -13.49110 -13.09495 -12.54102 -12.44960 -12.33311 -12.15057 -11.82971 -11.58304 -11.41026 -11.37555 -10.98540 -10.93725 -10.79524 -10.73012 -10.64820 -10.29738 -9.94350 -9.67123 -9.53928 -9.42194 -8.79064 -8.70893 -7.97529 -6.18867 -4.20483 3.26974 3.30677 3.37764 3.45423 3.65439 3.83092 4.19427 4.34250 4.36313 4.39744 4.76088 4.83700 4.88494 4.94249 5.03991 5.06573 5.09504 5.16932 5.24019 5.41136 5.41862 5.43807 5.50845 5.55671 5.61638 5.71166 5.75961 5.81475 5.91036 6.02772 6.08588 6.14721 6.25665 6.77701 6.90178 6.96808 7.14682 7.28125 7.44637 7.61634 8.31171 8.72359 8.84868 9.25910 9.43430 10.93177 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026518 B = 0.003794 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.636311 B = 7377.870312 C = 7734.850434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.724 5.724 11 C 0.693 3.307 12 O -0.604 6.604 13 N -0.750 5.750 14 C 0.173 3.827 15 H 0.089 0.911 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.067 4.067 20 C -0.149 4.149 21 C 0.061 3.939 22 O -0.383 6.383 23 C 0.062 3.938 24 C -0.143 4.143 25 H 0.267 0.733 26 H 0.018 0.982 27 H 0.022 0.978 28 H 0.391 0.609 29 H 0.393 0.607 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.220 -17.536 0.251 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.376 5.376 11 C 0.393 3.607 12 O -0.484 6.484 13 N -0.408 5.408 14 C 0.067 3.933 15 H 0.107 0.893 16 C -0.174 4.174 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.068 4.068 20 C -0.187 4.187 21 C -0.015 4.015 22 O -0.301 6.301 23 C -0.015 4.015 24 C -0.181 4.181 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.224 0.776 29 H 0.229 0.771 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.689 -16.557 0.453 24.233 hybrid contribution -0.269 0.387 -0.381 0.606 sum 17.420 -16.169 0.072 23.768 Atomic orbital electron populations 1.69883 1.06211 1.27380 1.49648 1.24780 0.94778 0.99152 0.93910 0.86810 0.80611 0.83201 0.79032 1.19880 1.20949 1.18449 1.21102 0.88606 0.95162 1.53093 0.90338 1.19339 0.94765 0.77725 0.96564 1.45394 1.03774 1.10955 1.77467 1.16168 0.83493 0.82896 0.78122 1.90854 1.55347 1.43325 1.58856 1.45477 1.07190 1.06527 1.81623 1.21246 0.80967 0.95231 0.95905 0.89282 1.22829 1.01527 0.96212 0.96819 1.22506 1.01279 0.95465 0.96825 1.22560 1.00153 0.98756 0.94128 1.21183 0.95559 0.94867 0.95211 1.22199 0.97368 0.97587 1.01515 1.22652 0.94250 0.95733 0.88908 1.87932 1.26502 1.82650 1.33053 1.22590 0.85529 0.92931 1.00413 1.22259 1.00120 0.98295 0.97442 0.92303 0.96442 0.95983 0.77601 0.77067 0.90883 0.91096 0.91561 0.91619 0.91313 0.91192 0.89982 0.90519 0.93041 0.88813 0.93154 0.89004 0.90507 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.54 -15.06 9.83 -34.44 -0.34 -15.40 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.24 6.03 4.50 -5.19 -0.02 6.00 16 10 N -0.72 -15.11 5.55 -66.41 -0.37 -15.48 16 11 C 0.69 13.76 8.56 -86.91 -0.74 13.02 16 12 O -0.60 -14.38 16.02 5.29 0.08 -14.29 16 13 N -0.75 -10.77 4.47 -57.70 -0.26 -11.03 16 14 C 0.17 2.16 2.86 -66.94 -0.19 1.97 16 15 H 0.09 1.32 7.14 -51.93 -0.37 0.95 16 16 C -0.13 -1.56 6.54 -25.01 -0.16 -1.73 16 17 C -0.12 -1.08 6.91 -24.69 -0.17 -1.25 16 18 C -0.12 -0.92 4.78 -25.20 -0.12 -1.04 16 19 C -0.07 -0.63 0.63 -153.96 -0.10 -0.73 16 20 C -0.15 -1.34 3.50 -26.75 -0.09 -1.44 16 21 C 0.06 0.52 6.62 37.24 0.25 0.76 16 22 O -0.38 -3.99 10.75 -35.23 -0.38 -4.37 16 23 C 0.06 0.51 6.64 37.25 0.25 0.76 16 24 C -0.14 -1.29 4.55 -26.76 -0.12 -1.41 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 27 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 28 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 29 H 0.39 4.69 5.82 -40.82 -0.24 4.45 16 30 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.48 6.06 -51.92 -0.31 0.16 16 35 H 0.07 0.50 7.77 -51.93 -0.40 0.09 16 36 H 0.08 0.88 7.57 -51.93 -0.39 0.49 16 37 H 0.08 0.62 7.10 -51.93 -0.37 0.25 16 38 H 0.05 0.37 6.42 -51.93 -0.33 0.04 16 39 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.05 0.35 7.46 -51.93 -0.39 -0.03 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -33.09 329.92 -8.38 -41.47 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.87 Total: 5.99 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.67 Total: 1.63 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.15 Total: -52.48 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.29 Total: -18.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.09 -8.38 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334328328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.251 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds