Wall clock time and date at job start Tue Mar 31 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99827 * 2 1 4 4 H 1.48504 * 109.47056 * 270.00649 * 3 2 1 5 5 H 1.48504 * 109.46674 * 30.00006 * 3 2 1 6 6 H 1.48495 * 109.47125 * 150.00169 * 3 2 1 7 7 C 1.37878 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99929 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99964 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99572 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99936 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99851 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.04064 * 325.70118 * 14 13 11 16 16 C 1.54364 * 110.10016 * 87.18276 * 14 13 11 17 17 C 1.54922 * 104.20201 * 95.71895 * 16 14 13 18 18 C 1.54967 * 102.79453 * 37.75192 * 17 16 14 19 19 C 1.53525 * 110.05886 * 204.24749 * 14 13 11 20 20 C 1.52784 * 110.09153 * 121.49693 * 19 14 13 21 21 C 1.53173 * 109.17710 * 182.53328 * 20 19 14 22 22 O 1.42908 * 109.36750 * 56.92573 * 21 20 19 23 23 C 1.42911 * 114.18988 * 298.49693 * 22 21 20 24 24 C 1.52793 * 110.07590 * 0.04752 * 19 14 13 25 25 H 0.96996 * 120.00636 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47099 * 60.00357 * 9 7 2 27 27 H 1.09000 * 109.46882 * 300.00082 * 9 7 2 28 28 H 0.97000 * 120.00604 * 359.97438 * 10 9 7 29 29 H 0.97000 * 120.00631 * 359.97438 * 13 11 10 30 30 H 1.08999 * 110.48306 * 214.39605 * 16 14 13 31 31 H 1.08994 * 110.48452 * 337.04089 * 16 14 13 32 32 H 1.09009 * 110.74853 * 279.43233 * 17 16 14 33 33 H 1.08998 * 110.90645 * 156.15510 * 17 16 14 34 34 H 1.08991 * 110.50720 * 203.68149 * 18 17 16 35 35 H 1.09003 * 110.49528 * 80.99938 * 18 17 16 36 36 H 1.09003 * 109.52034 * 302.43928 * 20 19 14 37 37 H 1.08997 * 109.51734 * 62.62465 * 20 19 14 38 38 H 1.09006 * 109.48616 * 296.95779 * 21 20 19 39 39 H 1.08998 * 109.50990 * 176.91150 * 21 20 19 40 40 H 1.08997 * 109.49277 * 301.54395 * 23 22 21 41 41 H 1.09000 * 109.50419 * 181.48693 * 23 22 21 42 42 H 1.09003 * 109.51840 * 297.39504 * 24 19 14 43 43 H 1.08997 * 109.51877 * 57.51639 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7541 -4.8834 -0.0011 12 8 0.5586 -5.1056 -0.0020 13 7 2.6299 -5.9076 -0.0016 14 6 2.1417 -7.2889 -0.0016 15 1 1.2198 -7.3593 0.5758 16 6 1.8971 -7.7651 -1.4494 17 6 3.1997 -8.5132 -1.8287 18 6 3.5776 -9.2343 -0.5101 19 6 3.2062 -8.2237 0.5901 20 6 2.6411 -8.9617 1.8026 21 6 3.7378 -9.8393 2.4136 22 8 4.8618 -9.0249 2.7537 23 6 5.4639 -8.3630 1.6394 24 6 4.4418 -7.4215 0.9952 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1569 -3.4353 -0.0009 29 1 3.5836 -5.7304 -0.0020 30 1 1.0433 -8.4416 -1.4894 31 1 1.7407 -6.9125 -2.1101 32 1 3.9787 -7.8086 -2.1203 33 1 3.0161 -9.2348 -2.6246 34 1 4.6456 -9.4502 -0.4856 35 1 2.9991 -10.1513 -0.3973 36 1 2.2992 -8.2381 2.5427 37 1 1.8052 -9.5879 1.4908 38 1 4.0425 -10.5963 1.6909 39 1 3.3566 -10.3262 3.3112 40 1 5.7878 -9.1035 0.9080 41 1 6.3247 -7.7874 1.9797 42 1 4.8804 -6.9573 0.1119 43 1 4.1565 -6.6488 1.7091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334328330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:43 Heat of formation + Delta-G solvation = -89.352818 kcal Electronic energy + Delta-G solvation = -23143.886757 eV Core-core repulsion = 19802.344918 eV Total energy + Delta-G solvation = -3341.541839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95550 -38.90927 -37.23256 -34.10867 -33.25487 -32.31131 -32.13402 -31.40712 -28.14812 -26.62995 -26.01434 -24.07308 -22.80064 -22.40272 -20.67047 -19.74262 -18.58936 -18.07907 -16.82036 -16.23154 -16.03441 -15.77761 -15.34516 -15.04960 -14.62708 -14.47333 -14.26442 -14.05171 -13.48431 -13.40293 -13.04423 -12.51015 -12.13982 -12.13258 -11.92807 -11.70046 -11.54271 -11.35178 -11.28979 -10.94975 -10.90990 -10.85407 -10.73892 -10.60661 -10.28117 -10.25733 -9.63867 -9.34570 -9.33109 -8.72054 -8.60612 -7.71542 -6.13078 -4.19510 3.26075 3.31186 3.33871 3.43907 3.68039 3.98066 4.24404 4.34252 4.39586 4.45001 4.80188 4.87175 4.92552 4.99057 5.10302 5.13385 5.17197 5.22989 5.28565 5.44388 5.45378 5.48582 5.55277 5.60312 5.66987 5.74968 5.79831 5.86005 5.95232 6.07635 6.15110 6.19361 6.31944 6.99192 7.00231 7.17147 7.55825 7.59097 7.60617 7.94829 8.08149 8.79760 8.99209 9.38006 9.52393 10.97217 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025505 B = 0.003644 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.545886 B = 7682.580518 C = 8117.103385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.691 3.309 12 O -0.602 6.602 13 N -0.751 5.751 14 C 0.173 3.827 15 H 0.089 0.911 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.068 4.068 20 C -0.143 4.143 21 C 0.062 3.938 22 O -0.383 6.383 23 C 0.061 3.939 24 C -0.148 4.148 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.385 0.615 29 H 0.391 0.609 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.080 -20.675 0.283 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.391 3.609 12 O -0.481 6.481 13 N -0.410 5.410 14 C 0.067 3.933 15 H 0.107 0.893 16 C -0.174 4.174 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.068 4.068 20 C -0.181 4.181 21 C -0.015 4.015 22 O -0.302 6.302 23 C -0.015 4.015 24 C -0.186 4.186 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.217 0.783 29 H 0.227 0.773 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.833 -20.665 0.485 22.891 hybrid contribution 1.109 1.161 -0.367 1.647 sum 10.942 -19.504 0.118 22.364 Atomic orbital electron populations 1.69977 1.06088 1.27229 1.49028 1.24942 0.94899 0.99373 0.94800 0.86422 0.79615 0.82719 0.78169 1.20507 1.21018 1.19783 1.21233 0.93240 0.90483 1.53009 0.91999 1.18956 0.87787 0.81104 0.97531 1.45715 1.10655 1.04507 1.77384 1.16201 0.85314 0.81106 0.78261 1.90863 1.14309 1.84247 1.58656 1.45497 1.08855 1.04759 1.81909 1.21223 0.96564 0.79834 0.95721 0.89271 1.22829 0.97245 1.00332 0.96964 1.22510 0.97847 0.98942 0.96770 1.22559 1.01086 0.97736 0.94217 1.21186 0.95166 0.95320 0.95170 1.22260 0.98592 0.99838 0.97432 1.22593 0.86288 0.92275 1.00298 1.87929 1.45634 1.63721 1.32882 1.22648 0.95231 0.94728 0.88935 1.22192 0.95805 0.99208 1.01382 0.92488 0.95820 0.95814 0.78326 0.77306 0.91120 0.90858 0.91629 0.91663 0.91389 0.91215 0.90621 0.90488 0.93182 0.89015 0.93069 0.88891 0.90597 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 10 N -0.73 -15.88 5.55 -66.42 -0.37 -16.25 16 11 C 0.69 14.42 8.56 -86.92 -0.74 13.68 16 12 O -0.60 -15.19 16.01 5.28 0.08 -15.10 16 13 N -0.75 -11.27 4.45 -57.70 -0.26 -11.53 16 14 C 0.17 2.27 2.87 -66.94 -0.19 2.08 16 15 H 0.09 1.39 7.12 -51.93 -0.37 1.02 16 16 C -0.13 -1.64 6.55 -25.00 -0.16 -1.80 16 17 C -0.12 -1.13 6.91 -24.68 -0.17 -1.30 16 18 C -0.12 -0.96 4.78 -25.20 -0.12 -1.08 16 19 C -0.07 -0.66 0.63 -153.96 -0.10 -0.76 16 20 C -0.14 -1.36 4.55 -26.75 -0.12 -1.48 16 21 C 0.06 0.53 6.64 37.25 0.25 0.78 16 22 O -0.38 -4.09 10.75 -35.23 -0.38 -4.47 16 23 C 0.06 0.53 6.62 37.24 0.25 0.78 16 24 C -0.15 -1.38 3.51 -26.75 -0.09 -1.48 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.38 7.17 8.34 -40.82 -0.34 6.83 16 29 H 0.39 4.85 5.85 -40.82 -0.24 4.61 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.49 6.06 -51.93 -0.31 0.18 16 35 H 0.07 0.52 7.77 -51.93 -0.40 0.12 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.05 0.37 7.47 -51.93 -0.39 -0.02 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.38 6.42 -51.93 -0.33 0.04 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.63 7.10 -51.93 -0.37 0.26 16 43 H 0.08 0.91 7.57 -51.93 -0.39 0.52 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -33.16 333.53 -8.73 -41.89 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.90 Total: 6.99 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.65 Total: 3.12 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.11 Total: -53.47 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.29 Total: -19.58 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.16 -8.73 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334328330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.461 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds