Wall clock time and date at job start Tue Mar 31 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00672 * 2 1 4 4 H 1.48501 * 109.47471 * 274.95268 * 3 2 1 5 5 H 1.48510 * 109.46799 * 34.95241 * 3 2 1 6 6 H 1.48499 * 109.47477 * 154.95067 * 3 2 1 7 7 C 1.37886 * 119.99318 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00084 * 354.96944 * 7 2 1 9 9 C 1.50699 * 119.99507 * 174.97338 * 7 2 1 10 10 C 1.53042 * 109.46147 * 215.05141 * 9 7 2 11 11 C 1.53186 * 109.31371 * 178.61643 * 10 9 7 12 12 N 1.46920 * 108.77632 * 54.63761 * 11 10 9 13 13 C 1.34783 * 120.63240 * 126.36899 * 12 11 10 14 14 O 1.21586 * 119.99908 * 174.95229 * 13 12 11 15 15 N 1.34770 * 119.99811 * 354.94602 * 13 12 11 16 16 C 1.46503 * 120.00079 * 185.10931 * 15 13 12 17 17 H 1.08999 * 109.52005 * 325.00028 * 16 15 13 18 18 C 1.53182 * 109.52338 * 204.87716 * 16 15 13 19 19 C 1.53181 * 109.03039 * 183.17513 * 18 16 15 20 20 C 1.53095 * 109.21697 * 56.88679 * 19 18 16 21 21 O 1.42905 * 109.41233 * 302.42473 * 20 19 18 22 22 C 1.42904 * 114.09958 * 61.15606 * 21 20 19 23 23 C 1.46932 * 118.74031 * 306.63983 * 12 11 10 24 24 C 1.52762 * 109.00457 * 53.31015 * 23 12 11 25 25 H 0.97006 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.45336 * 335.02247 * 9 7 2 27 27 H 1.08994 * 109.49504 * 58.65948 * 10 9 7 28 28 H 1.09005 * 109.52230 * 298.58690 * 10 9 7 29 29 H 1.09000 * 109.59076 * 294.84582 * 11 10 9 30 30 H 1.09008 * 109.58425 * 174.42179 * 11 10 9 31 31 H 0.97000 * 120.00098 * 5.10669 * 15 13 12 32 32 H 1.08999 * 109.54129 * 302.97909 * 18 16 15 33 33 H 1.08998 * 109.54247 * 63.24493 * 18 16 15 34 34 H 1.09004 * 109.47484 * 296.97881 * 19 18 16 35 35 H 1.08998 * 109.57947 * 176.85307 * 19 18 16 36 36 H 1.08995 * 109.48333 * 182.44143 * 20 19 18 37 37 H 1.09000 * 109.48243 * 62.39905 * 20 19 18 38 38 H 1.09005 * 109.48189 * 178.85987 * 22 21 20 39 39 H 1.09000 * 109.48164 * 58.82251 * 22 21 20 40 40 H 1.09000 * 109.58413 * 173.14398 * 23 12 11 41 41 H 1.09002 * 109.58668 * 293.57282 * 23 12 11 42 42 H 1.08995 * 109.56209 * 185.55661 * 24 23 12 43 43 H 1.09000 * 109.38810 * 65.51510 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6175 0.0000 4 1 2.3922 2.1067 -1.3948 5 1 1.5030 2.6201 0.8022 6 1 3.5952 1.4120 0.5928 7 6 2.0045 -1.1942 -0.0005 8 1 1.4675 -2.1276 0.0811 9 6 3.5071 -1.1967 -0.1149 10 6 3.9546 -2.4137 -0.9279 11 6 5.4796 -2.3942 -1.0714 12 7 6.0794 -2.3091 0.2670 13 6 7.0043 -3.2059 0.6634 14 8 7.5600 -3.0721 1.7365 15 7 7.3128 -4.2509 -0.1297 16 6 8.2339 -5.2856 0.3472 17 1 9.0004 -4.8300 0.9741 18 6 8.8951 -5.9741 -0.8508 19 6 9.7944 -7.1053 -0.3430 20 6 8.9589 -8.0746 0.4974 21 8 8.3485 -7.3633 1.5761 22 6 7.4586 -6.3250 1.1610 23 6 5.6477 -1.2313 1.1675 24 6 4.1248 -1.2605 1.2839 25 1 -0.4850 0.8401 0.0004 26 1 3.8346 -0.2853 -0.6152 27 1 3.4956 -2.3798 -1.9159 28 1 3.6489 -3.3262 -0.4160 29 1 5.7800 -1.5289 -1.6623 30 1 5.8120 -3.3084 -1.5634 31 1 6.9251 -4.3181 -1.0163 32 1 8.1263 -6.3861 -1.5045 33 1 9.4947 -5.2499 -1.4023 34 1 10.5932 -6.6874 0.2696 35 1 10.2260 -7.6373 -1.1908 36 1 9.6031 -8.8578 0.8968 37 1 8.1854 -8.5227 -0.1262 38 1 7.0221 -5.8479 2.0385 39 1 6.6656 -6.7503 0.5459 40 1 6.0910 -1.3785 2.1524 41 1 5.9621 -0.2692 0.7630 42 1 3.7871 -0.4058 1.8700 43 1 3.8171 -2.1833 1.7757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334370346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:46 Heat of formation + Delta-G solvation = -82.580036 kcal Electronic energy + Delta-G solvation = -23076.256904 eV Core-core repulsion = 19735.008755 eV Total energy + Delta-G solvation = -3341.248149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45662 -39.23797 -37.15466 -35.11766 -33.56761 -32.92486 -31.54415 -30.64785 -29.50802 -26.42917 -25.31850 -23.77813 -22.91172 -22.24999 -20.76470 -20.21482 -18.98850 -17.84150 -16.92517 -16.72274 -16.39164 -15.92651 -15.29397 -14.95343 -14.71923 -14.32187 -14.06815 -13.72735 -13.32647 -13.24575 -13.00420 -12.90928 -12.73691 -12.56371 -12.20744 -11.95850 -11.67535 -11.49931 -11.19084 -11.01931 -10.81958 -10.64897 -10.44825 -10.04277 -9.97621 -9.89184 -9.71075 -9.38766 -9.18259 -8.97587 -8.56294 -8.09790 -6.11595 -4.10681 2.74511 3.24521 3.35192 3.36601 3.38450 3.68491 4.03885 4.38490 4.40341 4.51094 4.60840 4.74801 4.98015 5.09550 5.14433 5.23179 5.27423 5.41847 5.49713 5.56382 5.59642 5.60544 5.67076 5.80788 5.84721 5.88483 5.95460 6.12404 6.27025 6.29024 6.45919 6.60894 6.67965 6.77605 6.86950 6.99724 7.21320 7.28953 7.40866 7.72308 8.11670 8.48341 8.77101 8.93759 9.51720 11.01872 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036276 B = 0.003641 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.684203 B = 7689.238730 C = 7839.194128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.512 4.512 8 H 0.071 0.929 9 C 0.017 3.983 10 C -0.117 4.117 11 C 0.109 3.891 12 N -0.619 5.619 13 C 0.707 3.293 14 O -0.596 6.596 15 N -0.744 5.744 16 C 0.131 3.869 17 H 0.096 0.904 18 C -0.130 4.130 19 C -0.151 4.151 20 C 0.055 3.945 21 O -0.377 6.377 22 C 0.051 3.949 23 C 0.125 3.875 24 C -0.127 4.127 25 H 0.263 0.737 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.396 0.604 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.824 -11.994 -4.312 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.550 4.550 8 H 0.089 0.911 9 C -0.002 4.002 10 C -0.155 4.155 11 C -0.014 4.014 12 N -0.355 5.355 13 C 0.408 3.592 14 O -0.475 6.475 15 N -0.404 5.404 16 C 0.025 3.975 17 H 0.115 0.885 18 C -0.168 4.168 19 C -0.189 4.189 20 C -0.022 4.022 21 O -0.295 6.295 22 C -0.027 4.027 23 C 0.002 3.998 24 C -0.166 4.166 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.081 -11.815 -3.310 21.851 hybrid contribution -0.045 1.006 -0.853 1.320 sum 18.036 -10.809 -4.163 21.436 Atomic orbital electron populations 1.69920 1.06385 1.26939 1.50624 1.25078 0.94670 0.99046 0.94379 0.86888 0.80748 0.83800 0.78323 1.20555 1.21508 1.18404 1.20977 0.89012 0.94490 1.50492 0.91070 1.19099 0.96519 0.93506 0.91076 1.21948 0.91252 1.00891 1.01454 1.21817 0.96044 1.00475 0.83109 1.47351 1.41214 1.30383 1.16558 1.15846 0.80142 0.79525 0.83654 1.90884 1.56021 1.77366 1.23266 1.45247 1.51425 1.24197 1.19513 1.21367 0.92305 0.87914 0.95896 0.88548 1.21887 0.99534 0.98116 0.97309 1.22170 0.99084 0.97081 1.00611 1.22631 0.96036 0.94010 0.89500 1.87996 1.61485 1.48350 1.31638 1.23052 0.91425 0.87830 1.00414 1.21613 0.96868 0.87708 0.93577 1.22199 0.91369 1.01844 1.01174 0.92688 0.95041 0.91273 0.92461 0.91753 0.91892 0.76697 0.91229 0.90662 0.90643 0.90394 0.88741 0.93088 0.88193 0.92980 0.90001 0.92565 0.91607 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 20.75 26.57 -169.99 -4.52 16.23 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -5.78 6.11 56.52 0.35 -5.43 16 7 C -0.51 -13.68 8.86 -34.44 -0.31 -13.99 16 8 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 9 C 0.02 0.37 1.61 -91.73 -0.15 0.22 16 10 C -0.12 -2.09 5.34 -26.61 -0.14 -2.24 16 11 C 0.11 1.57 6.43 -3.72 -0.02 1.54 16 12 N -0.62 -10.21 2.98 -178.76 -0.53 -10.74 16 13 C 0.71 11.69 8.26 -86.92 -0.72 10.97 16 14 O -0.60 -11.90 15.41 5.29 0.08 -11.81 16 15 N -0.74 -9.24 5.00 -58.54 -0.29 -9.53 16 16 C 0.13 1.49 2.70 -67.79 -0.18 1.30 16 17 H 0.10 1.31 7.51 -51.93 -0.39 0.92 16 18 C -0.13 -1.03 5.51 -26.54 -0.15 -1.18 16 19 C -0.15 -1.06 6.13 -26.59 -0.16 -1.22 16 20 C 0.06 0.44 6.84 37.21 0.25 0.70 16 21 O -0.38 -4.46 10.77 -35.23 -0.38 -4.84 16 22 C 0.05 0.61 6.42 37.21 0.24 0.85 16 23 C 0.12 2.25 6.39 -3.93 -0.03 2.22 16 24 C -0.13 -2.59 5.07 -26.83 -0.14 -2.72 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.69 5.59 -51.93 -0.29 0.40 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.70 5.57 -51.92 -0.29 0.41 16 31 H 0.40 4.02 6.06 -40.82 -0.25 3.77 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.50 7.04 -51.93 -0.37 1.14 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.39 7.17 -51.93 -0.37 1.02 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -31.96 331.19 -8.53 -40.50 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.06 Total: 3.08 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.59 Total: -1.70 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.05 Total: -46.45 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.30 Total: -16.65 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.52 Total: 16.23 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.96 -8.53 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334370346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.083 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds