Wall clock time and date at job start Tue Mar 31 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99449 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.54961 * 35.00467 * 14 13 11 16 16 C 1.53176 * 109.54994 * 274.80967 * 14 13 11 17 17 C 1.53099 * 109.18216 * 182.79108 * 16 14 13 18 18 O 1.42952 * 109.39916 * 57.99273 * 17 16 14 19 19 C 1.42534 * 114.20045 * 299.54252 * 18 17 16 20 20 C 1.53595 * 110.07474 * 298.39119 * 19 18 17 21 21 C 1.54338 * 106.50451 * 240.76380 * 20 19 18 22 22 C 1.54912 * 104.19918 * 23.56485 * 21 20 19 23 23 C 1.54017 * 109.79076 * 181.01433 * 19 18 17 24 24 C 1.52781 * 110.45511 * 59.90886 * 19 18 17 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 29 29 H 0.96992 * 119.99896 * 0.02562 * 13 11 10 30 30 H 1.08997 * 109.51870 * 302.70181 * 16 14 13 31 31 H 1.08995 * 109.52016 * 62.87966 * 16 14 13 32 32 H 1.09001 * 109.48086 * 177.97114 * 17 16 14 33 33 H 1.08997 * 109.48500 * 297.99329 * 17 16 14 34 34 H 1.09001 * 110.04275 * 0.02562 * 20 19 18 35 35 H 1.08996 * 110.04741 * 121.49667 * 20 19 18 36 36 H 1.09002 * 110.48104 * 264.89237 * 21 20 19 37 37 H 1.08997 * 110.60020 * 142.30133 * 21 20 19 38 38 H 1.09010 * 110.75309 * 203.88408 * 22 21 20 39 39 H 1.09001 * 110.90833 * 80.60327 * 22 21 20 40 40 H 1.08997 * 110.49943 * 214.56499 * 23 19 18 41 41 H 1.08996 * 110.49568 * 337.24884 * 23 19 18 42 42 H 1.09001 * 109.59576 * 183.67365 * 24 19 18 43 43 H 1.09004 * 109.44185 * 63.52425 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5582 -5.1056 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 2.1410 -7.2890 0.0027 15 1 1.2260 -7.3528 -0.5862 16 6 1.8563 -7.7309 1.4415 17 6 1.4133 -9.1964 1.4393 18 8 2.4335 -9.9999 0.8419 19 6 2.7295 -9.6585 -0.5099 20 6 1.4851 -9.8567 -1.3883 21 6 1.8602 -10.9144 -2.4478 22 6 3.0248 -11.7045 -1.8002 23 6 3.8184 -10.5992 -1.0589 24 6 3.2056 -8.2098 -0.6028 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 3.1566 -3.4355 0.0009 29 1 3.5830 -5.7306 0.0020 30 1 2.7606 -7.6247 2.0407 31 1 1.0645 -7.1116 1.8627 32 1 1.2441 -9.5264 2.4643 33 1 0.4903 -9.2963 0.8683 34 1 0.6528 -10.2139 -0.7818 35 1 1.2180 -8.9186 -1.8749 36 1 2.1913 -10.4323 -3.3675 37 1 1.0157 -11.5743 -2.6466 38 1 3.6426 -12.1772 -2.5640 39 1 2.6476 -12.4468 -1.0969 40 1 4.4691 -10.0663 -1.7523 41 1 4.3989 -11.0286 -0.2425 42 1 3.3654 -7.9437 -1.6477 43 1 4.1393 -8.0987 -0.0513 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334537362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:32 Heat of formation + Delta-G solvation = -98.379836 kcal Electronic energy + Delta-G solvation = -22701.583379 eV Core-core repulsion = 19359.650100 eV Total energy + Delta-G solvation = -3341.933279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68569 -39.02364 -36.38259 -35.11224 -34.00791 -32.40908 -31.10602 -30.79169 -28.98949 -27.18121 -25.69874 -23.90396 -22.69482 -21.65905 -20.84836 -20.08679 -18.97847 -18.04329 -16.72601 -16.53993 -15.99004 -15.54125 -15.21818 -14.99446 -14.59228 -14.52310 -14.15220 -13.72721 -13.48825 -13.33403 -13.24157 -12.90568 -11.95799 -11.93846 -11.86108 -11.69803 -11.48307 -11.36731 -11.29228 -11.11849 -10.96986 -10.94083 -10.83993 -10.77313 -10.30056 -10.24896 -9.70335 -9.36677 -9.29444 -8.76852 -8.67174 -7.75512 -6.14899 -4.21391 3.24924 3.28206 3.32104 3.36926 3.62133 3.93930 4.28321 4.32815 4.34565 4.62760 4.78217 4.83322 4.94642 5.02487 5.10768 5.17462 5.18443 5.21213 5.33295 5.38441 5.47554 5.53330 5.58821 5.61438 5.67496 5.74258 5.83616 5.87783 5.90037 6.03996 6.10234 6.12391 6.26954 6.89654 7.13393 7.19605 7.52619 7.56327 7.57905 7.92062 8.05561 8.77388 8.95755 9.34432 9.49098 10.95395 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038197 B = 0.003000 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.871134 B = 9330.374553 C = 9444.188929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.693 3.307 12 O -0.601 6.601 13 N -0.753 5.753 14 C 0.166 3.834 15 H 0.088 0.912 16 C -0.167 4.167 17 C 0.062 3.938 18 O -0.372 6.372 19 C 0.121 3.879 20 C -0.155 4.155 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.110 4.110 24 C -0.147 4.147 25 H 0.266 0.734 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.390 0.610 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.207 -22.107 -1.870 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.393 3.607 12 O -0.481 6.481 13 N -0.409 5.409 14 C 0.060 3.940 15 H 0.106 0.894 16 C -0.206 4.206 17 C -0.015 4.015 18 O -0.291 6.291 19 C 0.081 3.919 20 C -0.192 4.192 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.186 4.186 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.223 0.777 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.981 -22.255 -1.777 23.392 hybrid contribution 1.114 1.496 -0.037 1.866 sum 8.095 -20.758 -1.814 22.355 Atomic orbital electron populations 1.69980 1.06093 1.27253 1.48984 1.24947 0.94916 0.99403 0.94783 0.86411 0.79603 0.82667 0.78189 1.20487 1.21007 1.19783 1.21231 0.93256 0.90463 1.53065 0.91976 1.18968 0.87780 0.81088 0.97552 1.45728 1.10761 1.04460 1.77219 1.16180 0.85259 0.81072 0.78236 1.90861 1.14225 1.84227 1.58739 1.45236 1.08728 1.04810 1.82120 1.20683 0.97548 0.80049 0.95752 0.89410 1.22639 1.03072 0.96821 0.98112 1.22583 0.90628 0.89846 0.98453 1.87894 1.57570 1.57896 1.25729 1.21818 0.94507 0.93002 0.82566 1.22871 0.98254 1.00158 0.97960 1.22323 0.98359 0.97265 0.97987 1.22507 0.96859 0.97489 0.99241 1.22350 0.96536 0.96176 0.99713 1.22490 0.99288 0.94560 1.02235 0.92468 0.95782 0.95801 0.78201 0.77653 0.91147 0.89980 0.88742 0.92695 0.90635 0.90679 0.91499 0.91587 0.91501 0.91200 0.90235 0.90392 0.90194 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 10 N -0.73 -15.79 5.55 -66.41 -0.37 -16.16 16 11 C 0.69 14.40 8.53 -86.91 -0.74 13.66 16 12 O -0.60 -15.03 16.01 5.29 0.08 -14.94 16 13 N -0.75 -11.38 5.09 -58.47 -0.30 -11.68 16 14 C 0.17 2.22 2.30 -67.72 -0.16 2.07 16 15 H 0.09 1.37 6.32 -51.93 -0.33 1.04 16 16 C -0.17 -2.15 5.71 -26.59 -0.15 -2.30 16 17 C 0.06 0.68 6.53 37.21 0.24 0.93 16 18 O -0.37 -4.26 10.16 -35.23 -0.36 -4.61 16 19 C 0.12 1.21 0.96 -89.89 -0.09 1.12 16 20 C -0.15 -1.51 5.20 -25.72 -0.13 -1.64 16 21 C -0.12 -0.98 6.84 -25.02 -0.17 -1.15 16 22 C -0.12 -0.93 6.91 -24.69 -0.17 -1.10 16 23 C -0.11 -0.91 6.08 -25.17 -0.15 -1.06 16 24 C -0.15 -1.53 4.03 -26.73 -0.11 -1.63 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.39 7.14 8.34 -40.82 -0.34 6.80 16 29 H 0.39 4.77 8.62 -40.82 -0.35 4.42 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.60 6.48 -51.93 -0.34 0.26 16 34 H 0.08 0.76 6.53 -51.93 -0.34 0.42 16 35 H 0.07 0.79 6.65 -51.93 -0.35 0.45 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.57 7.83 -51.93 -0.41 0.17 16 41 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -32.69 338.51 -9.25 -41.93 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.05 Total: 7.43 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.07 Total: 2.56 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.07 Total: -53.43 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.27 Total: -19.56 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.69 -9.25 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.447 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds