Wall clock time and date at job start Tue Mar 31 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48491 * 109.47500 * 270.00752 * 3 2 1 5 5 H 1.48498 * 109.46859 * 30.00802 * 3 2 1 6 6 H 1.48501 * 109.46970 * 150.00251 * 3 2 1 7 7 C 1.37875 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99655 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00386 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47374 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99839 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00471 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99972 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.55300 * 324.79977 * 14 13 11 16 16 C 1.53174 * 109.54864 * 84.99988 * 14 13 11 17 17 C 1.53093 * 109.24433 * 177.22887 * 16 14 13 18 18 O 1.42975 * 109.38990 * 302.08122 * 17 16 14 19 19 C 1.42541 * 114.11779 * 60.49535 * 18 17 16 20 20 C 1.53583 * 110.07457 * 178.25261 * 19 18 17 21 21 C 1.54344 * 106.49948 * 240.75078 * 20 19 18 22 22 C 1.54919 * 104.20067 * 23.56727 * 21 20 19 23 23 C 1.54014 * 109.79396 * 60.86266 * 19 18 17 24 24 C 1.52765 * 110.35221 * 299.82198 * 19 18 17 25 25 H 0.97007 * 119.99752 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46995 * 59.99627 * 9 7 2 27 27 H 1.09001 * 109.47543 * 300.00059 * 9 7 2 28 28 H 0.96994 * 120.00147 * 0.02562 * 10 9 7 29 29 H 0.97002 * 119.99705 * 359.97438 * 13 11 10 30 30 H 1.09003 * 109.50925 * 57.29978 * 16 14 13 31 31 H 1.08997 * 109.50921 * 297.15690 * 16 14 13 32 32 H 1.09002 * 109.48668 * 182.11141 * 17 16 14 33 33 H 1.08989 * 109.50182 * 62.06531 * 17 16 14 34 34 H 1.08999 * 110.05614 * 0.02562 * 20 19 18 35 35 H 1.09002 * 110.04706 * 121.49230 * 20 19 18 36 36 H 1.08994 * 110.48447 * 264.88468 * 21 20 19 37 37 H 1.09001 * 110.59550 * 142.29934 * 21 20 19 38 38 H 1.08998 * 110.75217 * 203.88317 * 22 21 20 39 39 H 1.08994 * 110.90545 * 80.60133 * 22 21 20 40 40 H 1.08993 * 110.50067 * 214.57695 * 23 19 18 41 41 H 1.09004 * 110.49878 * 337.25691 * 23 19 18 42 42 H 1.09005 * 109.52252 * 296.81225 * 24 19 18 43 43 H 1.08998 * 109.57759 * 176.65519 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8216 -0.0009 12 8 6.1150 -1.8975 -0.0014 13 7 5.7741 -4.0923 -0.0013 14 6 7.2144 -4.3600 -0.0018 15 1 7.7262 -3.6014 -0.5939 16 6 7.7417 -4.3303 1.4360 17 6 9.2325 -4.6789 1.4340 18 8 9.4184 -5.9654 0.8386 19 6 8.9744 -6.0513 -0.5132 20 6 9.2565 -7.4535 -1.0726 21 6 10.2088 -7.2633 -2.2723 22 6 10.9037 -5.9068 -1.9946 23 6 9.7617 -5.0552 -1.3850 24 6 7.4805 -5.7447 -0.6022 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8746 -0.6801 -0.8911 28 1 3.3695 -3.3126 -0.0010 29 1 5.1437 -4.8296 -0.0013 30 1 7.1985 -5.0586 2.0381 31 1 7.6015 -3.3338 1.8546 32 1 9.6033 -4.6956 2.4588 33 1 9.7803 -3.9307 0.8613 34 1 9.7331 -8.0708 -0.3112 35 1 8.3274 -7.9179 -1.4030 36 1 9.6447 -7.2194 -3.2039 37 1 10.9436 -8.0676 -2.3099 38 1 11.2652 -5.4612 -2.9214 39 1 11.7192 -6.0263 -1.2815 40 1 9.1253 -4.6507 -2.1719 41 1 10.1702 -4.2515 -0.7722 42 1 6.9205 -6.4965 -0.0460 43 1 7.1670 -5.7555 -1.6461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334537363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:34 Heat of formation + Delta-G solvation = -93.666123 kcal Electronic energy + Delta-G solvation = -22768.548316 eV Core-core repulsion = 19426.819438 eV Total energy + Delta-G solvation = -3341.728878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75692 -39.16949 -36.43052 -35.20441 -34.12619 -32.43479 -31.25363 -30.87575 -29.01946 -27.77571 -25.80135 -23.98675 -22.44580 -21.58651 -20.74003 -20.14307 -19.26040 -18.25602 -16.85580 -16.35534 -16.27193 -15.62164 -15.58304 -14.99337 -14.62310 -14.42617 -14.20694 -13.94984 -13.43960 -13.31951 -13.25106 -13.01917 -12.36638 -12.27288 -11.99520 -11.84318 -11.57999 -11.45646 -11.28672 -11.11515 -10.98322 -10.95224 -10.81840 -10.74451 -10.31418 -9.96257 -9.77132 -9.48271 -9.40744 -8.86263 -8.74699 -8.01752 -6.20408 -4.22249 3.19900 3.28433 3.35611 3.43726 3.55682 3.78829 4.26118 4.29725 4.34734 4.58988 4.72078 4.74782 4.88071 4.92533 5.02216 5.10983 5.15239 5.19512 5.26419 5.33128 5.41072 5.46278 5.55270 5.58154 5.63673 5.66387 5.78438 5.83322 5.86469 6.00352 6.04104 6.07803 6.20809 6.74903 6.79426 7.12177 7.14591 7.25115 7.41446 7.58458 8.29096 8.69722 8.82319 9.21340 9.41272 10.91612 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035317 B = 0.003192 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.618887 B = 8770.461681 C = 8838.956971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.604 6.604 13 N -0.751 5.751 14 C 0.166 3.834 15 H 0.088 0.912 16 C -0.168 4.168 17 C 0.061 3.939 18 O -0.371 6.371 19 C 0.121 3.879 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.156 4.156 24 C -0.147 4.147 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.392 0.608 29 H 0.393 0.607 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.967 -15.653 -1.859 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.375 5.375 11 C 0.395 3.605 12 O -0.484 6.484 13 N -0.406 5.406 14 C 0.060 3.940 15 H 0.106 0.894 16 C -0.207 4.207 17 C -0.016 4.016 18 O -0.290 6.290 19 C 0.081 3.919 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.193 4.193 24 C -0.186 4.186 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.225 0.775 29 H 0.226 0.774 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.559 -14.776 -1.767 25.380 hybrid contribution -0.580 0.505 -0.050 0.771 sum 19.979 -14.271 -1.816 24.620 Atomic orbital electron populations 1.69885 1.06215 1.27404 1.49594 1.24785 0.94789 0.99173 0.93903 0.86806 0.80597 0.83180 0.79051 1.19856 1.20933 1.18447 1.21097 0.88586 0.95183 1.53147 0.90323 1.19348 0.94799 0.77669 0.96592 1.45405 1.03745 1.11040 1.77306 1.16138 0.83539 0.82756 0.78094 1.90852 1.55368 1.43205 1.58948 1.45198 1.07025 1.06602 1.81813 1.20689 0.81075 0.96410 0.95826 0.89409 1.22642 0.96571 1.03396 0.98078 1.22619 0.95111 0.85378 0.98512 1.87913 1.83200 1.32161 1.25754 1.21808 0.91737 0.95720 0.82619 1.22124 1.00228 0.94861 0.97597 1.22373 0.98242 0.97634 0.97864 1.22459 0.97608 0.95282 1.00531 1.23074 0.98000 0.98473 0.99796 1.22517 0.96766 0.96994 1.02301 0.92279 0.95955 0.96406 0.77481 0.77421 0.91053 0.90024 0.88694 0.92572 0.90287 0.90663 0.91440 0.91421 0.91543 0.91287 0.90453 0.90517 0.90607 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.24 5.99 4.50 -5.20 -0.02 5.96 16 10 N -0.72 -15.01 5.55 -66.42 -0.37 -15.38 16 11 C 0.70 13.73 8.53 -86.92 -0.74 12.99 16 12 O -0.60 -14.22 16.01 5.29 0.08 -14.13 16 13 N -0.75 -10.84 5.09 -58.46 -0.30 -11.13 16 14 C 0.17 2.12 2.31 -67.71 -0.16 1.96 16 15 H 0.09 1.29 6.88 -51.93 -0.36 0.94 16 16 C -0.17 -2.05 5.70 -26.59 -0.15 -2.21 16 17 C 0.06 0.64 6.57 37.21 0.24 0.88 16 18 O -0.37 -4.10 10.16 -35.23 -0.36 -4.45 16 19 C 0.12 1.16 0.98 -89.91 -0.09 1.07 16 20 C -0.11 -0.89 6.27 -25.72 -0.16 -1.05 16 21 C -0.12 -0.87 6.84 -25.01 -0.17 -1.04 16 22 C -0.12 -0.95 6.91 -24.69 -0.17 -1.12 16 23 C -0.16 -1.45 4.91 -25.17 -0.12 -1.57 16 24 C -0.15 -1.46 4.01 -26.72 -0.11 -1.57 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 27 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 28 H 0.39 7.14 8.33 -40.82 -0.34 6.80 16 29 H 0.39 4.59 8.62 -40.82 -0.35 4.24 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.57 6.05 -51.94 -0.31 0.26 16 34 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 35 H 0.07 0.53 7.66 -51.93 -0.40 0.14 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.73 7.74 -51.93 -0.40 0.33 16 41 H 0.08 0.75 5.82 -51.93 -0.30 0.45 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -32.65 335.00 -8.90 -41.55 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.02 Total: 6.40 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.09 Total: 1.05 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.11 Total: -52.43 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.27 Total: -18.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.65 -8.90 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.120 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds