Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48494 * 109.47121 * 269.99788 * 3 2 1 5 5 H 1.48505 * 109.46921 * 29.99977 * 3 2 1 6 6 H 1.48497 * 109.46978 * 149.99364 * 3 2 1 7 7 C 1.37875 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00279 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99703 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00392 * 0.26967 * 11 10 9 13 13 N 1.34775 * 119.99736 * 179.97438 * 11 10 9 14 14 C 1.47419 * 125.64959 * 354.97607 * 13 11 10 15 15 C 1.54910 * 104.83578 * 204.09119 * 14 13 11 16 16 C 1.55158 * 101.57753 * 322.98912 * 15 14 13 17 17 C 1.47023 * 125.64881 * 174.66415 * 13 11 10 18 18 H 1.09005 * 109.88053 * 59.56177 * 17 13 11 19 19 C 1.53000 * 109.88527 * 298.39938 * 17 13 11 20 20 C 1.53184 * 109.54110 * 302.13996 * 19 17 13 21 21 C 1.53097 * 109.15827 * 183.24107 * 20 19 17 22 22 O 1.42910 * 109.48943 * 57.47335 * 21 20 19 23 23 C 1.42906 * 114.09387 * 298.89252 * 22 21 20 24 24 C 1.53089 * 109.41911 * 61.15525 * 23 22 21 25 25 H 0.96994 * 120.00401 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47488 * 59.99606 * 9 7 2 27 27 H 1.09003 * 109.47078 * 300.00162 * 9 7 2 28 28 H 0.96997 * 119.99735 * 359.97438 * 10 9 7 29 29 H 1.08999 * 110.36773 * 322.92575 * 14 13 11 30 30 H 1.09002 * 110.37311 * 85.14487 * 14 13 11 31 31 H 1.08997 * 111.00469 * 81.05861 * 15 14 13 32 32 H 1.08998 * 111.00578 * 204.91634 * 15 14 13 33 33 H 1.09006 * 110.71970 * 153.86644 * 16 15 14 34 34 H 1.08996 * 110.72175 * 277.13423 * 16 15 14 35 35 H 1.09001 * 109.54399 * 62.31680 * 19 17 13 36 36 H 1.09003 * 109.51980 * 303.05786 * 20 19 17 37 37 H 1.09002 * 109.52159 * 63.24284 * 20 19 17 38 38 H 1.08998 * 109.40968 * 297.49394 * 21 20 19 39 39 H 1.08993 * 109.48472 * 177.50382 * 21 20 19 40 40 H 1.09000 * 109.47939 * 301.16745 * 23 22 21 41 41 H 1.09003 * 109.47818 * 181.13731 * 23 22 21 42 42 H 1.08998 * 109.52632 * 182.48312 * 24 23 22 43 43 H 1.09011 * 109.52422 * 62.29236 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5584 -5.1055 -0.0054 13 7 2.6297 -5.9077 -0.0005 14 6 4.0950 -5.7852 -0.1055 15 6 4.5672 -7.1469 -0.6735 16 6 3.6001 -8.1320 0.0349 17 6 2.2824 -7.3320 0.1100 18 1 1.6290 -7.6193 -0.7139 19 6 1.5858 -7.5957 1.4465 20 6 2.5022 -7.1644 2.5957 21 6 1.8313 -7.5062 3.9287 22 8 1.5495 -8.9065 3.9754 23 6 0.6587 -9.3567 2.9527 24 6 1.2834 -9.0913 1.5805 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 3.1567 -3.4353 0.0002 29 1 4.3603 -4.9773 -0.7874 30 1 4.5325 -5.6101 0.8774 31 1 4.4396 -7.1843 -1.7553 32 1 5.6020 -7.3482 -0.3964 33 1 3.4707 -9.0381 -0.5571 34 1 3.9589 -8.3720 1.0357 35 1 0.6551 -7.0301 1.4904 36 1 3.4527 -7.6929 2.5217 37 1 2.6765 -6.0899 2.5390 38 1 0.9014 -6.9451 4.0206 39 1 2.4979 -7.2420 4.7496 40 1 -0.2866 -8.8198 3.0317 41 1 0.4807 -10.4257 3.0704 42 1 0.5869 -9.3936 0.7985 43 1 2.2086 -9.6599 1.4853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335217318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = -86.227303 kcal Electronic energy + Delta-G solvation = -23361.910768 eV Core-core repulsion = 20020.504462 eV Total energy + Delta-G solvation = -3341.406306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48093 -38.85714 -37.23155 -34.25736 -33.74328 -32.30082 -31.25206 -30.99455 -28.68302 -27.01309 -24.72713 -23.60337 -23.17612 -22.00290 -21.56520 -19.57034 -18.91036 -17.80917 -16.61456 -16.11313 -15.89906 -15.77978 -15.14390 -14.79769 -14.75642 -14.52210 -14.18882 -13.75194 -13.57790 -12.96553 -12.80615 -12.57128 -12.47355 -12.13240 -11.97517 -11.92300 -11.64735 -11.46575 -11.19979 -10.95195 -10.92273 -10.87389 -10.63249 -10.49940 -10.28855 -10.07839 -9.58253 -9.36502 -9.32270 -8.71976 -8.32668 -7.70108 -6.14922 -4.21476 3.17865 3.24793 3.31273 3.34032 3.83974 3.92285 4.31338 4.45184 4.53581 4.72232 4.81966 4.87913 4.92215 5.01120 5.06160 5.21192 5.22099 5.32466 5.35239 5.37085 5.56420 5.61118 5.64159 5.69787 5.76740 5.81349 5.83647 5.92875 5.95955 6.04063 6.11937 6.26924 6.40591 6.67966 7.15067 7.22824 7.52966 7.57755 7.60506 7.91097 8.04601 8.77292 8.93176 9.35015 9.49785 10.95364 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.004141 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.561907 B = 6759.553713 C = 7317.532952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.728 5.728 11 C 0.712 3.288 12 O -0.596 6.596 13 N -0.639 5.639 14 C 0.101 3.899 15 C -0.130 4.130 16 C -0.132 4.132 17 C 0.166 3.834 18 H 0.070 0.930 19 C -0.102 4.102 20 C -0.144 4.144 21 C 0.060 3.940 22 O -0.387 6.387 23 C 0.061 3.939 24 C -0.147 4.147 25 H 0.266 0.734 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.385 0.615 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 -18.236 2.766 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.380 5.380 11 C 0.414 3.586 12 O -0.475 6.475 13 N -0.380 5.380 14 C -0.023 4.023 15 C -0.169 4.169 16 C -0.170 4.170 17 C 0.062 3.938 18 H 0.088 0.912 19 C -0.121 4.121 20 C -0.182 4.182 21 C -0.016 4.016 22 O -0.306 6.306 23 C -0.016 4.016 24 C -0.185 4.185 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.878 -18.245 2.895 20.083 hybrid contribution 0.758 1.341 -0.307 1.570 sum 8.636 -16.904 2.588 19.158 Atomic orbital electron populations 1.69976 1.06090 1.27250 1.48979 1.24936 0.94896 0.99362 0.94764 0.86421 0.79614 0.82701 0.78197 1.20484 1.21002 1.19778 1.21216 0.93216 0.90445 1.53084 0.92037 1.18967 0.87773 0.81070 0.97526 1.45757 1.10790 1.04276 1.77170 1.15678 0.84269 0.80377 0.78318 1.90860 1.13803 1.83842 1.59034 1.47675 1.05667 1.05232 1.79377 1.22193 0.81539 0.98159 1.00417 1.22733 0.99200 0.94355 1.00573 1.22818 0.94586 0.97948 1.01625 1.21228 0.95729 0.80244 0.96636 0.91182 1.21551 1.00339 0.95742 0.94507 1.22197 0.99139 1.02277 0.94564 1.22587 0.99657 0.81777 0.97616 1.87886 1.66604 1.24194 1.51883 1.22549 0.92223 0.99744 0.87046 1.22208 1.01891 0.96460 0.97981 0.92473 0.95838 0.95798 0.78209 0.90971 0.91990 0.90727 0.90183 0.90395 0.90032 0.89410 0.91152 0.90731 0.93135 0.89103 0.93181 0.89138 0.90870 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.27 7.26 5.43 -5.19 -0.03 7.23 16 10 N -0.73 -15.99 5.51 -66.41 -0.37 -16.36 16 11 C 0.71 15.05 8.23 -86.92 -0.72 14.33 16 12 O -0.60 -15.01 15.61 5.29 0.08 -14.93 16 13 N -0.64 -10.02 2.31 -168.69 -0.39 -10.40 16 14 C 0.10 1.19 6.47 -2.53 -0.02 1.17 16 15 C -0.13 -1.17 7.09 -24.58 -0.17 -1.35 16 16 C -0.13 -1.23 5.16 -24.89 -0.13 -1.36 16 17 C 0.17 2.19 2.66 -66.95 -0.18 2.01 16 18 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.10 -1.34 2.00 -90.43 -0.18 -1.52 16 20 C -0.14 -1.79 5.00 -26.59 -0.13 -1.93 16 21 C 0.06 0.74 6.84 37.21 0.25 0.99 16 22 O -0.39 -4.88 10.77 -35.23 -0.38 -5.26 16 23 C 0.06 0.65 6.84 37.20 0.25 0.91 16 24 C -0.15 -1.54 5.23 -26.59 -0.14 -1.68 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.39 7.40 6.92 -40.82 -0.28 7.12 16 29 H 0.07 0.86 7.50 -51.93 -0.39 0.47 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.72 5.44 -51.93 -0.28 0.44 16 35 H 0.09 1.49 7.10 -51.93 -0.37 1.12 16 36 H 0.07 0.78 6.01 -51.93 -0.31 0.47 16 37 H 0.07 1.07 7.69 -51.93 -0.40 0.67 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.67 6.95 -51.92 -0.36 0.31 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -32.76 335.25 -8.89 -41.65 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.00 Total: 4.54 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.60 Total: 5.34 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.02 Total: -52.32 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.30 Total: -20.19 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.76 -8.89 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335217318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.579 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds