Wall clock time and date at job start Tue Mar 31 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99379 * 2 1 4 4 H 1.48497 * 109.47261 * 239.99807 * 3 2 1 5 5 H 1.48503 * 109.47615 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47110 * 119.99912 * 3 2 1 7 7 C 1.37871 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99799 * 0.27537 * 7 2 1 10 10 N 1.46495 * 109.47202 * 179.72813 * 9 7 2 11 11 C 1.34784 * 120.00383 * 180.02562 * 10 9 7 12 12 O 1.21582 * 119.99668 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00113 * 180.02562 * 11 10 9 14 14 C 1.47425 * 125.64982 * 354.58878 * 13 11 10 15 15 C 1.54690 * 104.94394 * 204.08031 * 14 13 11 16 16 C 1.55157 * 101.67559 * 323.27806 * 15 14 13 17 17 C 1.47024 * 125.64878 * 174.90513 * 13 11 10 18 18 H 1.09004 * 109.88354 * 59.47865 * 17 13 11 19 19 C 1.52997 * 109.87956 * 298.46859 * 17 13 11 20 20 H 1.09007 * 109.52076 * 62.48869 * 19 17 13 21 21 C 1.53175 * 109.52353 * 302.36567 * 19 17 13 22 22 C 1.53185 * 109.03580 * 183.11656 * 21 19 17 23 23 C 1.53083 * 109.16567 * 56.97684 * 22 21 19 24 24 O 1.42903 * 109.41685 * 302.39323 * 23 22 21 25 25 C 1.42904 * 114.09940 * 61.15474 * 24 23 22 26 26 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.47392 * 299.72264 * 9 7 2 28 28 H 1.09001 * 109.47570 * 59.72921 * 9 7 2 29 29 H 0.97003 * 119.99845 * 359.97438 * 10 9 7 30 30 H 1.09002 * 110.36667 * 323.00606 * 14 13 11 31 31 H 1.09003 * 110.36939 * 85.33264 * 14 13 11 32 32 H 1.08996 * 111.10624 * 205.11112 * 15 14 13 33 33 H 1.08997 * 110.85137 * 81.33501 * 15 14 13 34 34 H 1.09009 * 110.72022 * 276.97440 * 16 15 14 35 35 H 1.08998 * 110.72247 * 153.70138 * 16 15 14 36 36 H 1.09006 * 109.54230 * 302.97431 * 21 19 17 37 37 H 1.08998 * 109.54870 * 63.15745 * 21 19 17 38 38 H 1.09000 * 109.52013 * 176.88621 * 22 21 19 39 39 H 1.09003 * 109.52036 * 297.07012 * 22 21 19 40 40 H 1.08998 * 109.48684 * 62.37486 * 23 22 21 41 41 H 1.09002 * 109.48273 * 182.41133 * 23 22 21 42 42 H 1.09002 * 109.48410 * 178.86010 * 25 24 23 43 43 H 1.09000 * 109.47760 * 58.82894 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0074 10 7 2.2032 -3.6125 -0.0132 11 6 1.7541 -4.8833 -0.0203 12 8 0.5588 -5.1055 -0.0216 13 7 2.6300 -5.9076 -0.0251 14 6 4.0949 -5.7849 -0.1362 15 6 4.5669 -7.1435 -0.7058 16 6 3.6003 -8.1320 -0.0016 17 6 2.2823 -7.3327 0.0731 18 1 1.6312 -7.6134 -0.7548 19 6 1.5788 -7.6062 1.4039 20 1 0.6463 -7.0432 1.4454 21 6 2.4871 -7.1779 2.5605 22 6 1.8056 -7.5278 3.8870 23 6 1.4984 -9.0272 3.9140 24 8 0.6758 -9.3639 2.7950 25 6 1.2804 -9.1026 1.5268 26 1 -0.4850 0.8400 -0.0004 27 1 0.6245 -2.5616 0.8823 28 1 0.6246 -2.5523 -0.8977 29 1 3.1569 -3.4352 -0.0126 30 1 4.3572 -4.9757 -0.8178 31 1 4.5368 -5.6136 0.8453 32 1 5.6018 -7.3462 -0.4306 33 1 4.4390 -7.1761 -1.7878 34 1 3.9599 -8.3770 0.9979 35 1 3.4704 -9.0351 -0.5979 36 1 3.4395 -7.7036 2.4902 37 1 2.6595 -6.1028 2.5101 38 1 2.4690 -7.2769 4.7147 39 1 0.8772 -6.9641 3.9793 40 1 2.4303 -9.5903 3.8624 41 1 0.9748 -9.2745 4.8375 42 1 0.5997 -9.4042 0.7306 43 1 2.2094 -9.6666 1.4440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335462823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:45 Heat of formation + Delta-G solvation = -85.637465 kcal Electronic energy + Delta-G solvation = -23366.219066 eV Core-core repulsion = 20024.838337 eV Total energy + Delta-G solvation = -3341.380729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50606 -38.86503 -37.19932 -34.20306 -33.61936 -32.43178 -31.73241 -31.14180 -27.80117 -26.99793 -25.05365 -24.06489 -22.85211 -22.00950 -21.50447 -19.65198 -18.91028 -17.80420 -16.60483 -16.11630 -15.92380 -15.85007 -15.15893 -14.85847 -14.65744 -14.39940 -14.12398 -13.87920 -13.55496 -12.98375 -12.82764 -12.63018 -12.42598 -12.33294 -11.93979 -11.84906 -11.66753 -11.37078 -11.26118 -10.95696 -10.94049 -10.85164 -10.74792 -10.53375 -10.28062 -10.10731 -9.53945 -9.36795 -9.26236 -8.70494 -8.33378 -7.69297 -6.13573 -4.20314 3.16601 3.26415 3.31505 3.33473 3.81792 3.94695 4.32049 4.43636 4.51321 4.70663 4.82712 4.85540 4.91017 4.98949 5.06046 5.15410 5.22278 5.26421 5.31841 5.35014 5.46091 5.52814 5.60950 5.66104 5.69972 5.77175 5.81519 5.93964 6.03356 6.10623 6.14036 6.29725 6.41688 6.67869 7.13568 7.23391 7.53987 7.59346 7.61171 7.92008 8.05568 8.78162 8.94166 9.36126 9.50912 10.96628 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.004130 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.395530 B = 6778.465254 C = 7331.516859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.728 5.728 11 C 0.712 3.288 12 O -0.594 6.594 13 N -0.638 5.638 14 C 0.101 3.899 15 C -0.130 4.130 16 C -0.134 4.134 17 C 0.166 3.834 18 H 0.072 0.928 19 C -0.135 4.135 20 H 0.096 0.904 21 C -0.110 4.110 22 C -0.157 4.157 23 C 0.062 3.938 24 O -0.382 6.382 25 C 0.070 3.930 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.385 0.615 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.724 -18.514 3.419 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.380 5.380 11 C 0.414 3.586 12 O -0.473 6.473 13 N -0.379 5.379 14 C -0.023 4.023 15 C -0.168 4.168 16 C -0.172 4.172 17 C 0.062 3.938 18 H 0.090 0.910 19 C -0.155 4.155 20 H 0.115 0.885 21 C -0.148 4.148 22 C -0.195 4.195 23 C -0.015 4.015 24 O -0.301 6.301 25 C -0.007 4.007 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.218 0.782 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.378 -18.480 3.435 21.006 hybrid contribution 1.199 1.309 -0.031 1.775 sum 10.577 -17.172 3.404 20.453 Atomic orbital electron populations 1.69972 1.06079 1.27356 1.48862 1.24934 0.94899 0.99342 0.94772 0.86480 0.79409 0.82391 0.78634 1.20103 1.21062 1.20113 1.21174 0.93165 0.90462 1.53221 0.92102 1.18966 0.87765 0.81034 0.97545 1.45754 1.10769 1.04266 1.77195 1.15677 0.84265 0.80373 0.78331 1.90869 1.13766 1.83787 1.58875 1.47643 1.05660 1.05068 1.79494 1.22149 0.81566 0.98172 1.00406 1.22693 0.99159 0.94319 1.00653 1.22840 0.94687 0.98084 1.01565 1.21153 0.95592 0.80504 0.96601 0.90982 1.22161 1.01255 0.97176 0.94909 0.88531 1.21585 0.97711 1.02094 0.93396 1.22197 1.01911 0.97129 0.98245 1.22553 0.94831 0.94514 0.89575 1.87935 1.43246 1.84890 1.13996 1.22582 0.98086 0.94222 0.85819 0.92414 0.95793 0.95817 0.78240 0.90907 0.92036 0.90153 0.90658 0.90192 0.90234 0.92049 0.91239 0.91144 0.90906 0.93529 0.89214 0.88949 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.31 5.43 -5.20 -0.03 7.29 16 10 N -0.73 -16.10 5.51 -66.41 -0.37 -16.46 16 11 C 0.71 15.17 8.24 -86.92 -0.72 14.45 16 12 O -0.59 -15.15 15.59 5.29 0.08 -15.07 16 13 N -0.64 -10.00 2.30 -168.83 -0.39 -10.38 16 14 C 0.10 1.18 6.46 -2.65 -0.02 1.16 16 15 C -0.13 -1.12 7.07 -24.70 -0.17 -1.30 16 16 C -0.13 -1.19 5.15 -24.90 -0.13 -1.31 16 17 C 0.17 2.17 2.66 -66.95 -0.18 1.99 16 18 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 19 C -0.14 -1.83 2.12 -90.48 -0.19 -2.02 16 20 H 0.10 1.75 7.08 -51.93 -0.37 1.38 16 21 C -0.11 -1.37 4.89 -26.55 -0.13 -1.50 16 22 C -0.16 -1.81 6.14 -26.59 -0.16 -1.97 16 23 C 0.06 0.65 6.84 37.20 0.25 0.90 16 24 O -0.38 -4.97 10.77 -35.23 -0.38 -5.35 16 25 C 0.07 0.80 5.93 37.20 0.22 1.02 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.39 7.43 6.93 -40.82 -0.28 7.14 16 30 H 0.07 0.86 7.51 -51.93 -0.39 0.47 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.65 5.47 -51.92 -0.28 0.37 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.63 6.03 -51.93 -0.31 0.32 16 37 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.46 6.95 -51.93 -0.36 0.10 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -33.29 335.22 -8.96 -42.24 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.00 Total: 4.49 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -1.67 Total: 5.17 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.02 Total: -52.52 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.30 Total: -20.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.29 -8.96 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335462823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.393 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds