Wall clock time and date at job start Tue Mar 31 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48501 * 109.47076 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47305 * 119.99994 * 3 2 1 6 6 H 1.48497 * 109.46622 * 239.99889 * 3 2 1 7 7 C 1.37873 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00528 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47194 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99757 * 180.02562 * 10 9 7 12 12 O 1.21591 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.47420 * 125.64859 * 354.92362 * 13 11 10 15 15 C 1.54915 * 104.83237 * 204.09435 * 14 13 11 16 16 C 1.55155 * 101.58002 * 322.99228 * 15 14 13 17 17 C 1.47025 * 125.64419 * 174.61827 * 13 11 10 18 18 H 1.09001 * 109.88197 * 59.56043 * 17 13 11 19 19 C 1.52999 * 109.88296 * 298.39268 * 17 13 11 20 20 H 1.09004 * 109.52369 * 62.32343 * 19 17 13 21 21 C 1.53181 * 109.52108 * 182.44378 * 19 17 13 22 22 C 1.53171 * 109.03598 * 176.88610 * 21 19 17 23 23 C 1.53101 * 109.16317 * 303.02252 * 22 21 19 24 24 O 1.42895 * 109.41421 * 57.60926 * 23 22 21 25 25 C 1.42914 * 114.15344 * 298.87358 * 24 23 22 26 26 H 0.97006 * 120.00186 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46904 * 300.00274 * 9 7 2 28 28 H 1.09004 * 109.46557 * 59.99508 * 9 7 2 29 29 H 0.96997 * 120.00049 * 359.97438 * 10 9 7 30 30 H 1.09001 * 110.37111 * 322.92992 * 14 13 11 31 31 H 1.09002 * 110.36427 * 85.14894 * 14 13 11 32 32 H 1.09001 * 111.00317 * 81.06627 * 15 14 13 33 33 H 1.08996 * 111.00718 * 204.88292 * 15 14 13 34 34 H 1.09001 * 110.72124 * 153.86273 * 16 15 14 35 35 H 1.09005 * 110.72428 * 277.13926 * 16 15 14 36 36 H 1.08992 * 109.54389 * 296.75621 * 21 19 17 37 37 H 1.09006 * 109.53775 * 57.02021 * 21 19 17 38 38 H 1.08993 * 109.52393 * 62.92678 * 22 21 19 39 39 H 1.08998 * 109.52645 * 183.11752 * 22 21 19 40 40 H 1.09000 * 109.48076 * 177.59214 * 23 22 21 41 41 H 1.09001 * 109.47725 * 297.61008 * 23 22 21 42 42 H 1.08995 * 109.42742 * 301.10923 * 25 24 23 43 43 H 1.09000 * 109.53672 * 181.07354 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6963 -1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5583 -5.1056 0.0000 13 7 2.6296 -5.9078 0.0005 14 6 4.0950 -5.7853 -0.1043 15 6 4.5672 -7.1475 -0.6711 16 6 3.6000 -8.1320 0.0378 17 6 2.2822 -7.3320 0.1121 18 1 1.6290 -7.6199 -0.7116 19 6 1.5855 -7.5945 1.4488 20 1 0.6548 -7.0287 1.4917 21 6 1.2821 -9.0899 1.5828 22 6 0.6560 -9.3515 2.9561 23 6 1.6081 -8.8518 4.0459 24 8 1.8729 -7.4621 3.8446 25 6 2.5010 -7.1612 2.5966 26 1 -0.4851 -0.8401 0.0004 27 1 0.6240 -2.5567 0.8903 28 1 0.6246 -2.5570 -0.8897 29 1 3.1567 -3.4354 0.0002 30 1 4.3604 -4.9780 -0.7869 31 1 4.5322 -5.6094 0.8785 32 1 4.4399 -7.1858 -1.7530 33 1 5.6021 -7.3483 -0.3943 34 1 3.4706 -9.0385 -0.5534 35 1 3.9585 -8.3712 1.0390 36 1 0.5855 -9.3922 0.8010 37 1 2.2068 -9.6594 1.4892 38 1 -0.2933 -8.8212 3.0306 39 1 0.4877 -10.4211 3.0820 40 1 1.1491 -8.9964 5.0239 41 1 2.5425 -9.4110 3.9966 42 1 3.4477 -7.6972 2.5287 43 1 2.6846 -6.0889 2.5301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335462826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:50 Heat of formation + Delta-G solvation = -89.198634 kcal Electronic energy + Delta-G solvation = -23414.757471 eV Core-core repulsion = 20073.222319 eV Total energy + Delta-G solvation = -3341.535153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58335 -38.90553 -37.26641 -34.41624 -33.91331 -32.49336 -31.59535 -31.17595 -27.85765 -26.57393 -25.11638 -24.08870 -22.93382 -22.13345 -21.54364 -19.66801 -19.01713 -17.99877 -16.81586 -16.57317 -16.11612 -15.69707 -15.16844 -14.81264 -14.57072 -14.28349 -13.93490 -13.84813 -13.63611 -13.15726 -12.86758 -12.72159 -12.48399 -12.44598 -12.19956 -12.01709 -11.75162 -11.47499 -11.22187 -11.05403 -10.94099 -10.79125 -10.74103 -10.64692 -10.27882 -10.13792 -9.47282 -9.41760 -8.75902 -8.66438 -8.41261 -7.82288 -6.47939 -4.20889 3.07874 3.39777 3.41789 3.60822 3.78643 3.87752 4.35256 4.45172 4.47502 4.65102 4.74202 4.76754 4.80578 4.87686 4.96285 5.08927 5.17598 5.23896 5.31205 5.35500 5.44816 5.49941 5.55276 5.61418 5.65653 5.71426 5.78060 5.84117 5.94633 5.98341 6.02625 6.15476 6.33909 6.58560 6.99002 7.17982 7.30107 7.41579 7.51971 7.87713 8.31970 8.64581 8.83044 9.28478 9.53716 10.92328 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.004175 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.413112 B = 6705.375518 C = 7244.952502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 1.076 2.924 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.622 4.622 8 H 0.056 0.944 9 C 0.258 3.742 10 N -0.722 5.722 11 C 0.712 3.288 12 O -0.595 6.595 13 N -0.641 5.641 14 C 0.098 3.902 15 C -0.130 4.130 16 C -0.133 4.133 17 C 0.167 3.833 18 H 0.074 0.926 19 C -0.135 4.135 20 H 0.096 0.904 21 C -0.113 4.113 22 C -0.156 4.156 23 C 0.060 3.940 24 O -0.381 6.381 25 C 0.072 3.928 26 H 0.273 0.727 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.388 0.612 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.244 -20.474 2.720 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.183 4.183 3 Si 0.903 3.097 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.660 4.660 8 H 0.074 0.926 9 C 0.136 3.864 10 N -0.374 5.374 11 C 0.414 3.586 12 O -0.474 6.474 13 N -0.381 5.381 14 C -0.025 4.025 15 C -0.168 4.168 16 C -0.171 4.171 17 C 0.062 3.938 18 H 0.092 0.908 19 C -0.155 4.155 20 H 0.114 0.886 21 C -0.151 4.151 22 C -0.194 4.194 23 C -0.017 4.017 24 O -0.300 6.300 25 C -0.004 4.004 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.221 0.779 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.007 -18.700 2.845 20.951 hybrid contribution 0.718 -1.810 -0.267 1.966 sum 9.725 -20.511 2.578 22.845 Atomic orbital electron populations 1.70750 1.06863 1.31082 1.44973 1.25861 0.96424 1.02645 0.93364 0.83447 0.74798 0.74907 0.76519 1.20564 1.21301 1.21343 1.22049 0.94495 0.91495 1.57946 0.92620 1.19038 0.88484 0.82571 0.96283 1.45548 1.10728 1.03962 1.77183 1.15680 0.84285 0.80382 0.78258 1.90864 1.13794 1.83836 1.58926 1.47690 1.05762 1.05230 1.79445 1.22234 0.81377 0.98333 1.00590 1.22737 0.99223 0.94157 1.00688 1.22830 0.94560 0.98161 1.01545 1.21214 0.95770 0.80229 0.96589 0.90840 1.22141 1.01549 0.96794 0.95003 0.88595 1.21597 1.00889 0.95416 0.97238 1.22182 1.00269 1.01376 0.95532 1.22553 0.97665 0.82812 0.98693 1.87978 1.80799 1.24098 1.37094 1.22621 0.93750 1.01358 0.82675 0.91667 0.96710 0.96830 0.77917 0.90787 0.91869 0.90569 0.90014 0.90121 0.90274 0.91335 0.91753 0.90898 0.91038 0.89189 0.93550 0.93338 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.65 55.43 0.76 -27.03 16 2 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 3 Si 1.08 24.74 29.90 -169.99 -5.08 19.66 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.62 -17.46 9.28 -34.44 -0.32 -17.78 16 8 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 9 C 0.26 7.06 4.74 -5.19 -0.02 7.04 16 10 N -0.72 -16.20 5.51 -66.41 -0.37 -16.56 16 11 C 0.71 15.27 8.24 -86.92 -0.72 14.55 16 12 O -0.60 -15.14 15.60 5.29 0.08 -15.06 16 13 N -0.64 -10.09 2.29 -168.68 -0.39 -10.48 16 14 C 0.10 1.15 6.47 -2.53 -0.02 1.13 16 15 C -0.13 -1.12 7.09 -24.58 -0.17 -1.29 16 16 C -0.13 -1.18 5.16 -24.89 -0.13 -1.30 16 17 C 0.17 2.18 2.66 -66.94 -0.18 2.00 16 18 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 19 C -0.14 -1.83 2.11 -90.48 -0.19 -2.02 16 20 H 0.10 1.73 7.09 -51.93 -0.37 1.36 16 21 C -0.11 -1.17 5.12 -26.55 -0.14 -1.30 16 22 C -0.16 -1.55 6.14 -26.59 -0.16 -1.71 16 23 C 0.06 0.63 6.84 37.21 0.25 0.88 16 24 O -0.38 -5.56 10.76 -35.23 -0.38 -5.94 16 25 C 0.07 0.98 5.71 37.20 0.21 1.19 16 26 H 0.27 8.55 7.22 -40.82 -0.29 8.25 16 27 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 28 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 29 H 0.39 7.66 6.92 -40.82 -0.28 7.38 16 30 H 0.07 0.88 7.50 -51.93 -0.39 0.49 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.64 5.45 -51.93 -0.28 0.36 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.54 6.95 -51.93 -0.36 0.18 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.54 6.02 -51.93 -0.31 0.23 16 43 H 0.09 1.47 7.65 -51.93 -0.40 1.07 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -34.26 333.90 -8.96 -43.22 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.94 Total: 5.21 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.68 Total: 1.94 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.01 Total: -54.07 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.30 Total: -21.00 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.26 -8.96 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335462826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.979 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds