Wall clock time and date at job start Tue Mar 31 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00233 * 2 1 4 4 H 1.48494 * 109.47539 * 270.00489 * 3 2 1 5 5 H 1.48504 * 109.46961 * 30.00681 * 3 2 1 6 6 H 1.48509 * 109.46675 * 150.00113 * 3 2 1 7 7 C 1.37877 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00036 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47296 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00142 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00372 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00478 * 180.02562 * 11 10 9 14 14 C 1.47429 * 125.64226 * 354.76995 * 13 11 10 15 15 C 1.55124 * 104.72260 * 155.81803 * 14 13 11 16 16 C 1.55158 * 101.48456 * 37.29196 * 15 14 13 17 17 C 1.47017 * 125.65612 * 175.07671 * 13 11 10 18 18 H 1.09003 * 109.87735 * 300.59438 * 17 13 11 19 19 C 1.53005 * 109.88142 * 61.60047 * 17 13 11 20 20 H 1.08995 * 109.52466 * 297.45645 * 19 17 13 21 21 C 1.53176 * 109.51950 * 177.26100 * 19 17 13 22 22 C 1.53182 * 109.03171 * 183.11542 * 21 19 17 23 23 C 1.53089 * 109.16125 * 56.98478 * 22 21 19 24 24 O 1.42905 * 109.41523 * 302.38690 * 23 22 21 25 25 C 1.42900 * 114.09536 * 61.15973 * 24 23 22 26 26 H 0.97004 * 119.99691 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47180 * 300.00033 * 9 7 2 28 28 H 1.09001 * 109.47153 * 59.99903 * 9 7 2 29 29 H 0.97002 * 119.99886 * 359.97438 * 10 9 7 30 30 H 1.09006 * 110.36416 * 274.74992 * 14 13 11 31 31 H 1.09003 * 110.36812 * 37.06452 * 14 13 11 32 32 H 1.09000 * 111.19310 * 279.18930 * 15 14 13 33 33 H 1.08996 * 110.93824 * 155.28476 * 15 14 13 34 34 H 1.08998 * 110.71777 * 205.96539 * 16 15 14 35 35 H 1.09003 * 110.72200 * 82.70085 * 16 15 14 36 36 H 1.08995 * 109.54977 * 302.98213 * 21 19 17 37 37 H 1.09000 * 109.54369 * 63.25422 * 21 19 17 38 38 H 1.08995 * 109.52236 * 297.07497 * 22 21 19 39 39 H 1.08998 * 109.52279 * 176.88942 * 22 21 19 40 40 H 1.09005 * 109.47656 * 182.40458 * 23 22 21 41 41 H 1.08994 * 109.48584 * 62.37398 * 23 22 21 42 42 H 1.08998 * 109.48010 * 178.85650 * 25 24 23 43 43 H 1.09006 * 109.48628 * 58.83340 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 1.7535 -4.8833 -0.0025 12 8 0.5581 -5.1055 -0.0017 13 7 2.6292 -5.9079 -0.0031 14 6 4.0944 -5.7857 -0.1123 15 6 4.6477 -7.0786 0.5425 16 6 3.6028 -8.1293 0.0825 17 6 2.2813 -7.3327 0.0986 18 1 1.7454 -7.5178 1.0295 19 6 1.4122 -7.7424 -1.0922 20 1 0.4781 -7.1810 -1.0716 21 6 1.1115 -9.2423 -1.0143 22 6 0.3074 -9.6554 -2.2509 23 6 1.0961 -9.2856 -3.5098 24 8 1.3691 -7.8828 -3.5043 25 6 2.1582 -7.4464 -2.3958 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5570 0.8897 28 1 0.6239 -2.5566 -0.8903 29 1 3.1565 -3.4355 -0.0028 30 1 4.3934 -5.7298 -1.1590 31 1 4.4432 -4.9070 0.4301 32 1 4.6644 -6.9939 1.6290 33 1 5.6384 -7.3177 0.1560 34 1 3.5594 -8.9626 0.7839 35 1 3.8281 -8.4824 -0.9238 36 1 2.0470 -9.8008 -0.9844 37 1 0.5314 -9.4517 -0.1156 38 1 -0.6496 -9.1336 -2.2542 39 1 0.1363 -10.7317 -2.2314 40 1 0.5099 -9.5384 -4.3933 41 1 2.0352 -9.8386 -3.5260 42 1 2.3373 -6.3743 -2.4768 43 1 3.1114 -7.9752 -2.3974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335462828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:53 Heat of formation + Delta-G solvation = -84.612954 kcal Electronic energy + Delta-G solvation = -23358.591765 eV Core-core repulsion = 20017.255462 eV Total energy + Delta-G solvation = -3341.336303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51061 -38.81858 -37.16477 -34.23247 -33.78434 -32.37828 -31.51801 -31.14214 -27.81393 -26.99315 -25.05835 -24.09407 -22.90291 -22.00960 -21.41673 -19.56836 -18.96894 -17.84933 -16.74192 -16.15994 -15.88793 -15.64337 -15.08700 -14.74849 -14.64856 -14.45460 -14.15071 -13.85252 -13.55574 -12.99017 -12.78743 -12.65070 -12.39199 -12.34418 -12.01267 -11.91594 -11.63817 -11.39655 -11.14880 -11.00427 -10.92548 -10.86129 -10.71437 -10.57890 -10.27417 -10.20870 -9.38767 -9.33449 -9.25869 -8.69521 -8.33951 -7.68270 -6.12255 -4.18726 3.16771 3.26905 3.33114 3.35761 3.86883 3.97492 4.33308 4.45021 4.50959 4.70614 4.80486 4.82781 4.85581 4.95861 5.04374 5.14625 5.23826 5.24399 5.29282 5.40847 5.50556 5.55594 5.60689 5.66293 5.71219 5.76743 5.83496 5.90149 6.00663 6.04498 6.08769 6.22090 6.43299 6.68819 7.22669 7.24961 7.55437 7.61123 7.62323 7.92771 8.06753 8.79769 8.95055 9.37134 9.52017 10.98037 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.004078 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.432751 B = 6864.970486 C = 7433.639449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.711 3.289 12 O -0.593 6.593 13 N -0.642 5.642 14 C 0.099 3.901 15 C -0.131 4.131 16 C -0.133 4.133 17 C 0.167 3.833 18 H 0.072 0.928 19 C -0.136 4.136 20 H 0.101 0.899 21 C -0.114 4.114 22 C -0.156 4.156 23 C 0.060 3.940 24 O -0.381 6.381 25 C 0.073 3.927 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.385 0.615 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.415 -20.277 -1.999 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.413 3.587 12 O -0.471 6.471 13 N -0.383 5.383 14 C -0.024 4.024 15 C -0.169 4.169 16 C -0.171 4.171 17 C 0.063 3.937 18 H 0.090 0.910 19 C -0.156 4.156 20 H 0.119 0.881 21 C -0.152 4.152 22 C -0.193 4.193 23 C -0.017 4.017 24 O -0.300 6.300 25 C -0.003 4.003 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.218 0.782 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.194 -20.035 -2.127 21.751 hybrid contribution 0.951 0.877 0.262 1.320 sum 9.145 -19.158 -1.865 21.311 Atomic orbital electron populations 1.69983 1.06087 1.27224 1.48971 1.24937 0.94898 0.99355 0.94785 0.86421 0.79592 0.82711 0.78196 1.20472 1.21025 1.19796 1.21214 0.93213 0.90453 1.53081 0.92037 1.18978 0.87776 0.81026 0.97589 1.45756 1.10806 1.04249 1.77146 1.15685 0.84271 0.80380 0.78357 1.90864 1.13741 1.83732 1.58802 1.47717 1.05720 1.05119 1.79729 1.22260 0.81255 0.98640 1.00266 1.22781 0.98482 0.94462 1.01165 1.22824 0.94123 0.97851 1.02318 1.21204 0.94833 0.80038 0.97667 0.90966 1.22173 1.01808 0.96419 0.95174 0.88100 1.21608 1.00062 0.95335 0.98193 1.22178 1.00310 1.01293 0.95557 1.22543 0.98449 0.82703 0.98021 1.87982 1.72943 1.23089 1.45946 1.22612 0.92182 1.00430 0.85086 0.92484 0.95787 0.95730 0.78202 0.91886 0.90830 0.90563 0.90148 0.90230 0.90297 0.91859 0.91405 0.90876 0.91138 0.89266 0.93619 0.88963 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 10 N -0.73 -16.16 5.51 -66.41 -0.37 -16.53 16 11 C 0.71 15.21 8.31 -86.92 -0.72 14.49 16 12 O -0.59 -15.09 15.24 5.29 0.08 -15.01 16 13 N -0.64 -10.10 2.28 -168.55 -0.38 -10.48 16 14 C 0.10 1.16 6.69 -2.41 -0.02 1.15 16 15 C -0.13 -1.13 7.10 -24.47 -0.17 -1.30 16 16 C -0.13 -1.19 5.13 -24.90 -0.13 -1.32 16 17 C 0.17 2.20 2.72 -66.96 -0.18 2.01 16 18 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 19 C -0.14 -1.87 2.11 -90.48 -0.19 -2.06 16 20 H 0.10 1.84 6.77 -51.93 -0.35 1.49 16 21 C -0.11 -1.19 5.12 -26.55 -0.14 -1.33 16 22 C -0.16 -1.57 6.14 -26.59 -0.16 -1.73 16 23 C 0.06 0.64 6.84 37.20 0.25 0.89 16 24 O -0.38 -5.62 10.77 -35.23 -0.38 -6.00 16 25 C 0.07 1.01 5.70 37.20 0.21 1.22 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.39 7.45 6.72 -40.82 -0.27 7.18 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.85 7.11 -51.93 -0.37 0.48 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.65 5.46 -51.93 -0.28 0.37 16 36 H 0.06 0.54 6.94 -51.93 -0.36 0.18 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 1.49 7.65 -51.93 -0.40 1.09 16 43 H 0.05 0.53 6.03 -51.93 -0.31 0.22 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -33.49 334.22 -8.94 -42.43 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.96 Total: 4.52 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.69 Total: 5.72 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.01 Total: -52.79 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.30 Total: -21.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.49 -8.94 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335462828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.178 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds