Wall clock time and date at job start Tue Mar 31 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00178 * 2 1 4 4 H 1.48507 * 109.47094 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47544 * 300.00100 * 3 2 1 6 6 H 1.48502 * 109.47179 * 60.00350 * 3 2 1 7 7 C 1.37878 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00208 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47162 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00042 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00025 * 4.97848 * 12 11 10 14 14 N 1.34776 * 120.00103 * 184.97903 * 12 11 10 15 15 C 1.47159 * 121.02402 * 174.80966 * 14 12 11 16 16 C 1.53276 * 108.48136 * 129.10217 * 15 14 12 17 17 O 1.43029 * 109.23483 * 52.64269 * 16 15 14 18 18 C 1.42543 * 114.23094 * 298.17074 * 17 16 15 19 19 C 1.53580 * 110.10277 * 300.02136 * 18 17 16 20 20 C 1.54347 * 106.52529 * 240.69106 * 19 18 17 21 21 C 1.55003 * 104.16270 * 336.48830 * 20 19 18 22 22 C 1.53950 * 109.92013 * 182.49300 * 18 17 16 23 23 C 1.47231 * 121.02095 * 354.78210 * 14 12 11 24 24 H 0.97004 * 119.99806 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47535 * 59.99977 * 9 7 2 26 26 H 1.09000 * 109.46977 * 299.99676 * 9 7 2 27 27 H 1.09001 * 109.47479 * 60.00128 * 10 9 7 28 28 H 1.08999 * 109.47370 * 299.99832 * 10 9 7 29 29 H 0.96998 * 120.00189 * 0.02562 * 11 10 9 30 30 H 1.09008 * 109.62935 * 248.79559 * 15 14 12 31 31 H 1.08992 * 109.63406 * 9.39971 * 15 14 12 32 32 H 1.08995 * 109.51376 * 172.56921 * 16 15 14 33 33 H 1.09004 * 109.51247 * 292.67079 * 16 15 14 34 34 H 1.08995 * 110.05762 * 359.97291 * 19 18 17 35 35 H 1.08995 * 110.05244 * 121.41131 * 19 18 17 36 36 H 1.08998 * 110.48492 * 95.12716 * 20 19 18 37 37 H 1.08994 * 110.48957 * 217.77705 * 20 19 18 38 38 H 1.09003 * 110.70369 * 279.38985 * 21 20 19 39 39 H 1.08998 * 110.91549 * 156.13544 * 21 20 19 40 40 H 1.08997 * 110.49986 * 261.55631 * 22 18 17 41 41 H 1.09000 * 110.50639 * 24.10430 * 22 18 17 42 42 H 1.08996 * 109.68418 * 110.24307 * 23 14 12 43 43 H 1.09001 * 109.71679 * 349.70175 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9308 -0.0020 12 6 2.1864 -6.0980 -0.0024 13 8 3.3989 -6.1001 0.0891 14 7 1.5164 -7.2630 -0.1042 15 6 2.2334 -8.5427 -0.2208 16 6 1.6733 -9.5108 0.8273 17 8 0.2503 -9.5744 0.6972 18 6 -0.4138 -8.3335 0.9229 19 6 -0.1226 -7.8299 2.3443 20 6 -1.4846 -7.7351 3.0641 21 6 -2.5128 -7.5919 1.9130 22 6 -1.9375 -8.5276 0.8199 23 6 0.0444 -7.2944 -0.1015 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 2.8711 -3.6049 0.8890 28 1 2.8725 -3.6041 -0.8909 29 1 0.5426 -4.9308 -0.0028 30 1 2.0844 -8.9564 -1.2182 31 1 3.2968 -8.3843 -0.0418 32 1 2.0977 -10.5024 0.6706 33 1 1.9328 -9.1572 1.8251 34 1 0.5269 -8.5338 2.8645 35 1 0.3479 -6.8475 2.3037 36 1 -1.6774 -8.6422 3.6368 37 1 -1.5131 -6.8598 3.7130 38 1 -2.5528 -6.5622 1.5579 39 1 -3.5001 -7.9286 2.2290 40 1 -2.2947 -8.2282 -0.1654 41 1 -2.2049 -9.5647 1.0229 42 1 -0.3188 -7.5699 -1.0915 43 1 -0.3439 -6.3132 0.1720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335724358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:49 Heat of formation + Delta-G solvation = -81.597143 kcal Electronic energy + Delta-G solvation = -23184.821614 eV Core-core repulsion = 19843.616087 eV Total energy + Delta-G solvation = -3341.205527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88642 -39.01615 -36.46563 -34.93089 -34.64084 -32.84456 -31.03729 -29.62727 -28.96902 -27.77535 -25.30764 -24.80529 -23.06435 -21.08812 -20.84006 -20.15460 -19.04910 -18.09854 -16.93150 -16.47225 -16.16817 -15.79034 -15.33799 -15.06528 -14.58178 -14.49808 -14.03800 -13.88787 -13.75556 -13.50752 -13.22783 -12.81666 -12.33533 -12.29892 -11.78142 -11.61756 -11.44528 -11.29830 -11.15908 -11.12633 -11.06131 -10.72826 -10.65534 -10.61962 -10.35809 -10.10766 -9.88627 -9.55910 -9.25877 -8.70121 -8.45980 -8.18601 -6.10251 -4.12729 2.76473 3.28024 3.35720 3.41080 3.48832 3.49967 4.15882 4.31939 4.37492 4.44456 4.51853 4.81933 4.87104 4.98321 5.04199 5.16929 5.22840 5.27151 5.33275 5.39019 5.45876 5.55012 5.61890 5.67093 5.71053 5.76502 5.85139 5.91318 6.04488 6.13966 6.22102 6.37961 6.48278 6.75271 6.96562 7.04241 7.12008 7.54038 7.61365 7.88847 8.22008 8.33441 8.89590 8.95168 9.52187 11.01499 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.003953 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.430297 B = 7081.073585 C = 7986.658683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.738 5.738 12 C 0.704 3.296 13 O -0.594 6.594 14 N -0.637 5.637 15 C 0.097 3.903 16 C 0.044 3.956 17 O -0.370 6.370 18 C 0.103 3.897 19 C -0.147 4.147 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.108 4.108 23 C 0.094 3.906 24 H 0.261 0.739 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.391 0.609 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 -19.855 2.661 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.393 5.393 12 C 0.406 3.594 13 O -0.473 6.473 14 N -0.376 5.376 15 C -0.027 4.027 16 C -0.033 4.033 17 O -0.288 6.288 18 C 0.063 3.937 19 C -0.185 4.185 20 C -0.159 4.159 21 C -0.163 4.163 22 C -0.146 4.146 23 C -0.030 4.030 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.227 0.773 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.368 -19.840 2.661 20.488 hybrid contribution 0.099 1.187 0.012 1.191 sum -4.269 -18.653 2.673 19.321 Atomic orbital electron populations 1.69965 1.06092 1.26746 1.50538 1.24988 0.94886 0.99399 0.94985 0.86460 0.80200 0.83326 0.77607 1.19561 1.20934 1.20941 1.21083 0.93307 0.90305 1.51147 0.92161 1.19326 0.94243 0.91109 0.97757 1.21619 0.95683 0.80379 1.00692 1.45694 1.09861 1.05317 1.78431 1.15930 0.85290 0.80313 0.77863 1.90875 1.11959 1.86099 1.58381 1.47285 1.05650 1.05622 1.79086 1.22068 0.98675 0.82708 0.99250 1.23036 0.81437 1.00224 0.98626 1.87921 1.18573 1.30794 1.91553 1.22278 0.93235 0.84447 0.93787 1.22723 0.98381 1.02192 0.95212 1.22335 0.94001 1.01946 0.97600 1.22553 0.98598 0.99929 0.95234 1.22310 0.91089 1.01267 0.99945 1.22318 0.80787 1.00251 0.99691 0.92918 0.96003 0.96012 0.92684 0.92794 0.77322 0.91244 0.87997 0.87818 0.92345 0.90924 0.90941 0.91534 0.91213 0.90787 0.90907 0.90521 0.90001 0.90759 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.03 5.62 -4.04 -0.02 3.00 16 11 N -0.74 -13.52 5.47 -65.23 -0.36 -13.88 16 12 C 0.70 12.88 8.31 -86.92 -0.72 12.15 16 13 O -0.59 -12.99 15.82 5.29 0.08 -12.91 16 14 N -0.64 -9.03 2.84 -178.17 -0.51 -9.53 16 15 C 0.10 1.16 6.64 -3.54 -0.02 1.14 16 16 C 0.04 0.45 6.67 37.30 0.25 0.70 16 17 O -0.37 -4.16 10.17 -35.23 -0.36 -4.52 16 18 C 0.10 1.09 0.97 -89.86 -0.09 1.00 16 19 C -0.15 -1.60 5.48 -25.72 -0.14 -1.74 16 20 C -0.12 -1.11 6.84 -24.97 -0.17 -1.28 16 21 C -0.13 -1.04 6.91 -24.64 -0.17 -1.21 16 22 C -0.11 -0.94 6.09 -25.20 -0.15 -1.09 16 23 C 0.09 1.08 4.88 -3.67 -0.02 1.07 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.39 6.31 6.04 -40.82 -0.25 6.07 16 30 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.10 1.34 7.06 -51.93 -0.37 0.97 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.62 6.36 -51.93 -0.33 0.29 16 34 H 0.07 0.80 6.42 -51.93 -0.33 0.47 16 35 H 0.07 0.92 7.61 -51.93 -0.40 0.53 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 41 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 42 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 43 H 0.09 1.02 5.74 -51.93 -0.30 0.73 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -32.10 337.03 -9.13 -41.23 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.98 Total: 2.74 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.81 Total: 0.73 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.13 Total: -48.68 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.27 Total: -17.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.10 -9.13 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335724358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.366 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds