Wall clock time and date at job start Tue Mar 31 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99656 * 2 1 4 4 H 1.48497 * 109.46947 * 270.00234 * 3 2 1 5 5 H 1.48502 * 109.46920 * 29.99919 * 3 2 1 6 6 H 1.48498 * 109.47133 * 150.00009 * 3 2 1 7 7 C 1.37873 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99534 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00410 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47499 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00341 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99592 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00361 * 179.97438 * 11 10 9 14 14 C 1.47020 * 125.64861 * 0.03182 * 13 11 10 15 15 C 1.54316 * 107.27264 * 180.99942 * 14 13 11 16 16 C 1.55154 * 102.94541 * 22.18961 * 15 14 13 17 17 H 1.09000 * 110.99946 * 82.61052 * 16 15 14 18 18 C 1.52997 * 111.00863 * 206.42353 * 16 15 14 19 19 C 1.53177 * 109.54370 * 296.82378 * 18 16 15 20 20 C 1.53098 * 109.21356 * 183.18188 * 19 18 16 21 21 O 1.42899 * 109.40993 * 57.57693 * 20 19 18 22 22 C 1.42898 * 114.10053 * 298.83671 * 21 20 19 23 23 C 1.53097 * 109.41405 * 61.16391 * 22 21 20 24 24 C 1.47471 * 125.62927 * 179.97438 * 13 11 10 25 25 H 0.96998 * 120.00894 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47023 * 59.99508 * 9 7 2 27 27 H 1.09004 * 109.47133 * 300.00748 * 9 7 2 28 28 H 0.96998 * 119.99898 * 0.02562 * 10 9 7 29 29 H 1.09008 * 109.88108 * 61.57890 * 14 13 11 30 30 H 1.09001 * 110.00969 * 300.49358 * 14 13 11 31 31 H 1.09000 * 110.71889 * 263.82847 * 15 14 13 32 32 H 1.09001 * 110.72136 * 140.55824 * 15 14 13 33 33 H 1.09005 * 109.61074 * 57.04268 * 18 16 15 34 34 H 1.09002 * 109.52487 * 63.24399 * 19 18 16 35 35 H 1.09004 * 109.52023 * 303.12019 * 19 18 16 36 36 H 1.08999 * 109.47354 * 177.55660 * 20 19 18 37 37 H 1.08999 * 109.48099 * 297.59428 * 20 19 18 38 38 H 1.09007 * 109.48578 * 181.14563 * 22 21 20 39 39 H 1.08997 * 109.48390 * 301.18013 * 22 21 20 40 40 H 1.09002 * 109.52138 * 62.29619 * 23 22 21 41 41 H 1.09005 * 109.52063 * 182.42027 * 23 22 21 42 42 H 1.08994 * 110.40160 * 37.11091 * 24 13 11 43 43 H 1.09001 * 110.34502 * 274.77392 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7541 -4.8833 0.0000 12 8 0.5586 -5.1055 0.0000 13 7 2.6299 -5.9076 -0.0005 14 6 4.0948 -5.7825 -0.0010 15 6 4.6767 -7.2115 -0.0272 16 6 3.5100 -8.0513 -0.6110 17 1 3.4943 -7.9944 -1.6994 18 6 3.5923 -9.5052 -0.1419 19 6 4.8805 -10.1425 -0.6717 20 6 4.9168 -11.6181 -0.2652 21 8 3.7557 -12.2790 -0.7721 22 6 2.5226 -11.7574 -0.2729 23 6 2.3900 -10.2874 -0.6797 24 6 2.2772 -7.3395 0.0005 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 3.1568 -3.4353 -0.0002 29 1 4.4229 -5.2650 0.9006 30 1 4.4219 -5.2327 -0.8835 31 1 4.9255 -7.5451 0.9802 32 1 5.5502 -7.2604 -0.6775 33 1 3.5903 -9.5387 0.9477 34 1 5.7427 -9.6268 -0.2489 35 1 4.9057 -10.0633 -1.7586 36 1 5.8107 -12.0865 -0.6770 37 1 4.9335 -11.6953 0.8219 38 1 1.6916 -12.3263 -0.6900 39 1 2.5080 -11.8364 0.8141 40 1 2.3638 -10.2112 -1.7667 41 1 1.4705 -9.8757 -0.2634 42 1 1.3946 -7.5139 -0.6149 43 1 2.1050 -7.6867 1.0193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335812449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:10 Heat of formation + Delta-G solvation = -93.453345 kcal Electronic energy + Delta-G solvation = -22351.540971 eV Core-core repulsion = 19009.821321 eV Total energy + Delta-G solvation = -3341.719651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27176 -39.24463 -37.38808 -34.40612 -34.12987 -32.28604 -31.50382 -30.59518 -28.92117 -27.11587 -25.00980 -23.99023 -23.01014 -21.97638 -20.90754 -20.22264 -19.26855 -17.96988 -16.77186 -16.27835 -16.08915 -15.67266 -15.31368 -15.14101 -14.65359 -14.55145 -14.18012 -14.08878 -13.45211 -13.30517 -12.86981 -12.70255 -12.57930 -12.46389 -11.94547 -11.76207 -11.67724 -11.58809 -11.53352 -11.31491 -10.94614 -10.87450 -10.79681 -10.50722 -10.50086 -10.28518 -9.77387 -9.38624 -9.35423 -8.71659 -8.35636 -7.70251 -6.14059 -4.20639 3.18795 3.25369 3.31692 3.34595 3.58790 3.92257 4.16152 4.32317 4.34921 4.43917 4.66280 4.68953 4.75624 4.91751 4.95691 5.04086 5.07935 5.16485 5.21895 5.28773 5.35734 5.39776 5.46040 5.53621 5.56789 5.63959 5.72010 5.76412 5.82518 5.88895 5.96885 6.01258 6.20100 6.54807 6.89384 7.22219 7.53445 7.58812 7.60556 7.91093 8.04849 8.77764 8.93018 9.34722 9.49837 10.96271 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046337 B = 0.002848 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.117700 B = 9830.624586 C =10333.681449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.710 3.290 12 O -0.599 6.599 13 N -0.646 5.646 14 C 0.101 3.899 15 C -0.123 4.123 16 C -0.096 4.096 17 H 0.085 0.915 18 C -0.076 4.076 19 C -0.150 4.150 20 C 0.060 3.940 21 O -0.386 6.386 22 C 0.061 3.939 23 C -0.155 4.155 24 C 0.134 3.866 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 -21.915 -0.035 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.412 3.588 12 O -0.478 6.478 13 N -0.387 5.387 14 C -0.023 4.023 15 C -0.161 4.161 16 C -0.115 4.115 17 H 0.104 0.896 18 C -0.095 4.095 19 C -0.188 4.188 20 C -0.017 4.017 21 O -0.305 6.305 22 C -0.016 4.016 23 C -0.192 4.192 24 C 0.010 3.990 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.218 0.782 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.230 -21.954 -0.156 24.660 hybrid contribution 0.897 1.393 0.203 1.670 sum 12.127 -20.561 0.047 23.871 Atomic orbital electron populations 1.69977 1.06088 1.27261 1.48974 1.24944 0.94914 0.99386 0.94783 0.86411 0.79596 0.82665 0.78196 1.20473 1.20998 1.19782 1.21215 0.93229 0.90429 1.53078 0.92012 1.18988 0.87797 0.81052 0.97607 1.45726 1.10826 1.04220 1.77081 1.15704 0.84241 0.80453 0.78392 1.90872 1.13784 1.83869 1.59233 1.47619 1.05354 1.05430 1.80256 1.21903 0.81313 0.97543 1.01512 1.22655 0.97816 0.93887 1.01716 1.22425 0.95083 0.93275 1.00744 0.89642 1.21131 0.94758 0.93280 1.00338 1.22243 0.98113 0.96121 1.02290 1.22580 0.88595 0.92345 0.98138 1.87927 1.14035 1.58441 1.70049 1.22594 0.86706 0.94052 0.98255 1.22293 0.98899 0.95626 1.02422 1.21972 0.97281 0.79599 1.00175 0.92458 0.95741 0.95746 0.78161 0.91845 0.91825 0.90631 0.90211 0.90687 0.90618 0.90891 0.89023 0.93284 0.88874 0.93213 0.90792 0.90310 0.90704 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.34 5.43 -5.20 -0.03 7.31 16 10 N -0.73 -16.40 5.51 -66.42 -0.37 -16.77 16 11 C 0.71 15.66 8.49 -86.92 -0.74 14.92 16 12 O -0.60 -15.71 16.60 5.28 0.09 -15.62 16 13 N -0.65 -10.57 3.33 -176.19 -0.59 -11.15 16 14 C 0.10 1.22 6.15 -3.07 -0.02 1.20 16 15 C -0.12 -1.05 5.50 -24.90 -0.14 -1.19 16 16 C -0.10 -0.90 2.57 -88.46 -0.23 -1.12 16 17 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.08 -0.58 1.77 -90.44 -0.16 -0.74 16 19 C -0.15 -1.00 5.18 -26.59 -0.14 -1.14 16 20 C 0.06 0.42 6.84 37.21 0.25 0.67 16 21 O -0.39 -3.59 10.76 -35.23 -0.38 -3.97 16 22 C 0.06 0.47 6.84 37.21 0.25 0.72 16 23 C -0.15 -1.23 5.20 -26.59 -0.14 -1.37 16 24 C 0.13 1.77 5.55 -2.49 -0.01 1.75 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.39 7.58 7.31 -40.82 -0.30 7.28 16 29 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.08 0.42 7.52 -51.93 -0.39 0.03 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.63 7.58 -51.93 -0.39 0.24 16 42 H 0.07 1.09 8.03 -51.93 -0.42 0.68 16 43 H 0.06 0.75 8.03 -51.93 -0.42 0.34 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -33.91 342.86 -9.23 -43.14 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.36 Total: 1.52 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.51 Total: 7.38 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.22 Total: -53.65 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.29 Total: -19.59 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.91 -9.23 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335812449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.311 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds