Wall clock time and date at job start Tue Mar 31 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99564 * 2 1 4 4 H 1.48503 * 109.47285 * 270.00138 * 3 2 1 5 5 H 1.48507 * 109.47075 * 30.00081 * 3 2 1 6 6 H 1.48498 * 109.47231 * 150.00372 * 3 2 1 7 7 C 1.37872 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99903 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00007 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47467 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00431 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99894 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00097 * 179.72742 * 11 10 9 14 14 C 1.47022 * 125.64657 * 0.29061 * 13 11 10 15 15 C 1.54326 * 107.26839 * 178.90692 * 14 13 11 16 16 C 1.55156 * 102.94326 * 337.81019 * 15 14 13 17 17 H 1.09002 * 111.00861 * 277.42577 * 16 15 14 18 18 C 1.53000 * 111.00562 * 153.61152 * 16 15 14 19 19 C 1.53177 * 109.54516 * 179.55599 * 18 16 15 20 20 C 1.53092 * 109.16260 * 183.15334 * 19 18 16 21 21 O 1.42904 * 109.41584 * 57.60970 * 20 19 18 22 22 C 1.42910 * 114.09720 * 298.84296 * 21 20 19 23 23 C 1.53092 * 109.41626 * 61.15618 * 22 21 20 24 24 C 1.47427 * 125.64684 * 179.97438 * 13 11 10 25 25 H 0.96995 * 120.00475 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47290 * 59.99999 * 9 7 2 27 27 H 1.08998 * 109.47607 * 300.00424 * 9 7 2 28 28 H 0.97000 * 119.99456 * 359.97438 * 10 9 7 29 29 H 1.08999 * 109.88664 * 298.32416 * 14 13 11 30 30 H 1.09000 * 109.87697 * 59.34088 * 14 13 11 31 31 H 1.09001 * 110.71745 * 96.17527 * 15 14 13 32 32 H 1.09000 * 110.72217 * 219.27251 * 15 14 13 33 33 H 1.09004 * 109.54454 * 299.82863 * 18 16 15 34 34 H 1.09000 * 109.52579 * 303.05703 * 19 18 16 35 35 H 1.08998 * 109.51939 * 63.24949 * 19 18 16 36 36 H 1.08997 * 109.48564 * 297.62838 * 20 19 18 37 37 H 1.08994 * 109.48190 * 177.59292 * 20 19 18 38 38 H 1.08995 * 109.48075 * 301.17178 * 22 21 20 39 39 H 1.09003 * 109.48719 * 181.14289 * 22 21 20 40 40 H 1.08993 * 109.52179 * 182.48575 * 23 22 21 41 41 H 1.09001 * 109.57328 * 62.32924 * 23 22 21 42 42 H 1.09001 * 110.36425 * 322.99552 * 24 13 11 43 43 H 1.09000 * 110.36745 * 85.32028 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4404 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0001 -2.5750 -0.0010 11 6 5.3252 -2.8212 -0.0009 12 8 6.1152 -1.8970 -0.0014 13 7 5.7745 -4.0919 0.0047 14 6 4.9338 -5.2980 0.0051 15 6 5.8807 -6.5165 -0.0155 16 6 7.1927 -5.9271 -0.5974 17 1 7.1541 -5.8872 -1.6860 18 6 8.4095 -6.7245 -0.1237 19 6 9.6829 -6.1222 -0.7254 20 6 10.8861 -6.9728 -0.3100 21 8 10.6868 -8.3204 -0.7417 22 6 9.5367 -8.9509 -0.1741 23 6 8.2793 -8.1797 -0.5840 24 6 7.1904 -4.5025 0.0050 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6802 0.8889 27 1 3.8746 -0.6798 -0.8910 28 1 3.3698 -3.3123 -0.0002 29 1 4.3193 -5.3213 0.9050 30 1 4.2965 -5.3058 -0.8792 31 1 6.0425 -6.8962 0.9933 32 1 5.4866 -7.3002 -0.6625 33 1 8.4671 -6.6901 0.9643 34 1 9.6024 -6.1114 -1.8124 35 1 9.8126 -5.1040 -0.3587 36 1 10.9901 -6.9502 0.7747 37 1 11.7898 -6.5735 -0.7704 38 1 9.6231 -8.9542 0.9124 39 1 9.4684 -9.9766 -0.5365 40 1 7.4054 -8.6330 -0.1162 41 1 8.1693 -8.2104 -1.6680 42 1 7.7813 -3.8274 -0.6141 43 1 7.5793 -4.5231 1.0230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335812450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:13 Heat of formation + Delta-G solvation = -89.879370 kcal Electronic energy + Delta-G solvation = -22400.920393 eV Core-core repulsion = 19059.355722 eV Total energy + Delta-G solvation = -3341.564672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33968 -39.33651 -37.49615 -34.46673 -34.25375 -32.32651 -31.53983 -30.70377 -29.03804 -27.67785 -25.07111 -24.03888 -22.91773 -21.72333 -20.93674 -20.26003 -19.45796 -18.05476 -16.81867 -16.41691 -16.30431 -15.80399 -15.39553 -15.18827 -14.69212 -14.43262 -14.27143 -14.14738 -13.51842 -13.36101 -12.98746 -12.81133 -12.63584 -12.54014 -12.32164 -11.99341 -11.74864 -11.66762 -11.57422 -11.34989 -10.96921 -10.83097 -10.74598 -10.54802 -10.53309 -9.94931 -9.81001 -9.57314 -9.44128 -8.76314 -8.49272 -7.93931 -6.19692 -4.21510 3.08101 3.29054 3.35876 3.44901 3.56110 3.77570 4.12064 4.29935 4.35568 4.40144 4.61304 4.64517 4.70023 4.84971 4.92275 4.98614 5.01842 5.13188 5.15919 5.24591 5.32437 5.36289 5.42608 5.50076 5.53771 5.60379 5.68816 5.73004 5.78203 5.83836 5.92681 5.96257 6.15867 6.44083 6.81739 6.86726 7.13106 7.29198 7.42241 7.61066 8.27698 8.68703 8.81176 9.21420 9.42101 10.92292 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044734 B = 0.002976 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.778116 B = 9406.083111 C = 9932.229953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.238 3.762 10 N -0.720 5.720 11 C 0.713 3.287 12 O -0.602 6.602 13 N -0.644 5.644 14 C 0.099 3.901 15 C -0.123 4.123 16 C -0.096 4.096 17 H 0.085 0.915 18 C -0.076 4.076 19 C -0.154 4.154 20 C 0.060 3.940 21 O -0.386 6.386 22 C 0.060 3.940 23 C -0.150 4.150 24 C 0.133 3.867 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.392 0.608 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.647 -19.282 0.031 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.115 3.885 10 N -0.372 5.372 11 C 0.414 3.586 12 O -0.481 6.481 13 N -0.384 5.384 14 C -0.024 4.024 15 C -0.160 4.160 16 C -0.116 4.116 17 H 0.104 0.896 18 C -0.095 4.095 19 C -0.192 4.192 20 C -0.016 4.016 21 O -0.304 6.304 22 C -0.017 4.017 23 C -0.188 4.188 24 C 0.010 3.990 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.226 0.774 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.103 -18.420 -0.089 25.826 hybrid contribution -0.360 0.693 0.180 0.801 sum 17.743 -17.727 0.091 25.081 Atomic orbital electron populations 1.69880 1.06200 1.27411 1.49608 1.24778 0.94789 0.99158 0.93888 0.86810 0.80612 0.83162 0.79074 1.19837 1.20924 1.18428 1.21082 0.88529 0.95177 1.53154 0.90352 1.19371 0.94834 0.77614 0.96642 1.45406 1.03572 1.11047 1.77188 1.15654 0.83587 0.81072 0.78267 1.90863 1.55556 1.42239 1.59446 1.47562 1.06982 1.03936 1.79956 1.21948 0.94085 0.84630 1.01749 1.22654 0.94741 0.96820 1.01828 1.22385 0.94058 0.94306 1.00807 0.89631 1.21133 0.93751 0.94286 1.00344 1.22288 0.94740 1.00029 1.02134 1.22590 0.98013 0.82111 0.98906 1.87932 1.45790 1.26582 1.70137 1.22584 0.85047 0.96573 0.97470 1.22246 0.98608 0.95412 1.02516 1.21932 0.82620 0.94170 1.00306 0.92278 0.95912 0.96360 0.77447 0.91634 0.91649 0.90579 0.90090 0.90652 0.90779 0.90381 0.93206 0.88891 0.93266 0.88989 0.90548 0.90864 0.90701 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.11 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.54 -15.15 9.83 -34.44 -0.34 -15.49 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.24 6.09 4.50 -5.19 -0.02 6.07 16 10 N -0.72 -15.64 5.51 -66.41 -0.37 -16.01 16 11 C 0.71 14.98 8.49 -86.92 -0.74 14.24 16 12 O -0.60 -14.92 16.60 5.28 0.09 -14.83 16 13 N -0.64 -10.11 3.33 -176.38 -0.59 -10.70 16 14 C 0.10 1.17 6.15 -3.06 -0.02 1.15 16 15 C -0.12 -1.01 5.35 -24.90 -0.13 -1.15 16 16 C -0.10 -0.86 2.55 -88.60 -0.23 -1.08 16 17 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 18 C -0.08 -0.56 1.80 -90.43 -0.16 -0.72 16 19 C -0.15 -1.16 5.24 -26.59 -0.14 -1.30 16 20 C 0.06 0.45 6.84 37.20 0.25 0.70 16 21 O -0.39 -3.50 10.77 -35.23 -0.38 -3.87 16 22 C 0.06 0.41 6.84 37.20 0.25 0.66 16 23 C -0.15 -0.96 5.14 -26.59 -0.14 -1.10 16 24 C 0.13 1.68 5.70 -2.65 -0.02 1.67 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.62 7.20 -51.92 -0.37 0.24 16 27 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 28 H 0.39 7.60 7.31 -40.82 -0.30 7.30 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.59 7.69 -51.93 -0.40 0.19 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.41 7.43 -51.93 -0.39 0.02 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 43 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -33.80 339.17 -8.87 -42.67 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.32 Total: 0.75 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -1.52 Total: 5.76 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.18 Total: -52.69 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.29 Total: -18.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.80 -8.87 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335812450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.206 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds