Wall clock time and date at job start Tue Mar 31 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99990 * 2 1 4 4 H 1.48499 * 109.46939 * 239.99947 * 3 2 1 5 5 H 1.48493 * 109.47197 * 119.99732 * 3 2 1 6 6 H 1.48502 * 109.46912 * 359.97438 * 3 2 1 7 7 C 1.37877 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99525 * 0.02562 * 7 2 1 10 10 N 1.46510 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99702 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00134 * 355.01800 * 11 10 9 13 13 N 1.34781 * 119.99607 * 175.01126 * 11 10 9 14 14 C 1.46927 * 120.62820 * 4.94758 * 13 11 10 15 15 C 1.53628 * 108.53964 * 126.36779 * 14 13 11 16 16 C 1.53036 * 109.24321 * 54.85412 * 15 14 13 17 17 C 1.53002 * 109.45685 * 178.49186 * 16 15 14 18 18 H 1.09005 * 110.27651 * 179.36934 * 17 16 15 19 19 C 1.54952 * 110.30898 * 301.45586 * 17 16 15 20 20 C 1.55413 * 100.89236 * 155.29282 * 19 17 16 21 21 C 1.54386 * 102.30856 * 325.99037 * 20 19 17 22 22 O 1.43237 * 107.58571 * 21.28800 * 21 20 19 23 23 C 1.53044 * 109.53924 * 298.50756 * 16 15 14 24 24 C 1.46922 * 120.63014 * 185.22423 * 13 11 10 25 25 H 0.96997 * 119.99962 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47397 * 299.99610 * 9 7 2 27 27 H 1.08995 * 109.47653 * 60.00075 * 9 7 2 28 28 H 0.97000 * 120.00025 * 0.02562 * 10 9 7 29 29 H 1.09003 * 109.58479 * 246.19642 * 14 13 11 30 30 H 1.08996 * 109.58847 * 6.62756 * 14 13 11 31 31 H 1.09003 * 109.63136 * 294.86054 * 15 14 13 32 32 H 1.09000 * 109.45455 * 174.74345 * 15 14 13 33 33 H 1.09002 * 109.45067 * 58.52944 * 16 15 14 34 34 H 1.09001 * 111.12531 * 273.28280 * 19 17 16 35 35 H 1.08994 * 111.12539 * 37.44222 * 19 17 16 36 36 H 1.08998 * 110.88235 * 207.75688 * 20 19 17 37 37 H 1.09002 * 110.76445 * 84.17275 * 20 19 17 38 38 H 1.09003 * 109.82816 * 261.77205 * 21 20 19 39 39 H 1.09001 * 109.90521 * 140.84293 * 21 20 19 40 40 H 1.08996 * 109.49420 * 301.41959 * 23 16 15 41 41 H 1.08991 * 109.49577 * 181.31592 * 23 16 15 42 42 H 1.09003 * 109.58705 * 353.37311 * 24 13 11 43 43 H 1.08994 * 109.58826 * 113.66052 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2841 2.7464 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5621 -5.1068 0.0930 13 7 2.6254 -5.9063 -0.1005 14 6 4.0736 -5.6583 -0.1035 15 6 4.7196 -6.5233 0.9894 16 6 4.3326 -7.9874 0.7685 17 6 5.0040 -8.8582 1.8324 18 1 4.7281 -9.9036 1.6941 19 6 6.5436 -8.6953 1.7675 20 6 6.9408 -9.0773 3.2206 21 6 5.7457 -8.5439 4.0396 22 8 4.6329 -8.4143 3.1470 23 6 2.8129 -8.1363 0.8725 24 6 2.1454 -7.2901 -0.2162 25 1 -0.4850 -0.8400 -0.0004 26 1 0.6241 -2.5567 0.8903 27 1 0.6247 -2.5571 -0.8896 28 1 3.1567 -3.4355 0.0009 29 1 4.4877 -5.9241 -1.0762 30 1 4.2644 -4.6050 0.1018 31 1 4.3690 -6.1981 1.9689 32 1 5.8038 -6.4220 0.9391 33 1 4.6618 -8.3045 -0.2211 34 1 6.9814 -9.3840 1.0450 35 1 6.8205 -7.6652 1.5432 36 1 7.8651 -8.5798 3.5143 37 1 7.0308 -10.1586 3.3250 38 1 5.9936 -7.5714 4.4651 39 1 5.5001 -9.2447 4.8374 40 1 2.4803 -7.7959 1.8530 41 1 2.5400 -9.1829 0.7382 42 1 1.0635 -7.3138 -0.0853 43 1 2.4033 -7.6854 -1.1987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336105204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:21 Heat of formation + Delta-G solvation = -86.350358 kcal Electronic energy + Delta-G solvation = -22853.140772 eV Core-core repulsion = 19511.729130 eV Total energy + Delta-G solvation = -3341.411642 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37901 -39.38588 -37.00586 -34.41910 -33.36511 -32.50644 -32.17120 -30.85277 -28.91217 -26.65382 -24.83510 -23.48999 -22.76065 -22.12109 -21.45180 -20.18633 -19.08147 -18.11599 -17.00641 -16.60805 -16.11998 -15.65329 -15.11975 -14.86162 -14.43456 -14.30606 -13.97706 -13.73271 -13.56950 -13.30664 -13.12731 -13.01735 -12.29649 -12.13399 -12.01361 -11.95622 -11.88840 -11.63490 -11.38044 -11.23789 -10.91313 -10.88280 -10.74789 -10.56086 -10.27722 -10.13316 -9.66406 -9.40828 -8.74269 -8.65047 -8.37084 -7.77880 -6.47086 -4.19785 3.21660 3.40093 3.42111 3.56777 3.61160 3.86574 4.15895 4.34418 4.45443 4.55562 4.60116 4.67488 4.80140 4.86068 4.96605 5.05178 5.18415 5.32000 5.33731 5.34334 5.40361 5.43518 5.48764 5.51856 5.56883 5.70331 5.75675 5.79228 5.86636 5.94853 6.08893 6.15957 6.41388 6.80151 6.84439 7.01998 7.32638 7.42594 7.51454 7.87886 8.33359 8.66390 8.85671 9.31899 9.55074 10.93325 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.003569 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.445600 B = 7844.465271 C = 8528.236774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 1.076 2.924 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.621 4.621 8 H 0.055 0.945 9 C 0.257 3.743 10 N -0.726 5.726 11 C 0.698 3.302 12 O -0.601 6.601 13 N -0.636 5.636 14 C 0.113 3.887 15 C -0.128 4.128 16 C -0.083 4.083 17 C 0.086 3.914 18 H 0.069 0.931 19 C -0.157 4.157 20 C -0.156 4.156 21 C 0.050 3.950 22 O -0.372 6.372 23 C -0.125 4.125 24 C 0.131 3.869 25 H 0.273 0.727 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.387 0.613 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.666 -19.911 3.019 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.903 3.097 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.660 4.660 8 H 0.074 0.926 9 C 0.135 3.865 10 N -0.380 5.380 11 C 0.399 3.601 12 O -0.481 6.481 13 N -0.375 5.375 14 C -0.011 4.011 15 C -0.166 4.166 16 C -0.101 4.101 17 C 0.029 3.971 18 H 0.087 0.913 19 C -0.194 4.194 20 C -0.194 4.194 21 C -0.027 4.027 22 O -0.292 6.292 23 C -0.164 4.164 24 C 0.007 3.993 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.223 0.777 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.339 -18.284 3.127 24.070 hybrid contribution 1.054 -1.787 0.026 2.074 sum 16.392 -20.071 3.153 26.105 Atomic orbital electron populations 1.70747 1.06859 1.31104 1.45022 1.25868 0.96440 1.02658 0.93394 0.83447 0.74794 0.74903 0.76512 1.21330 1.21318 1.20570 1.22056 0.94483 0.91542 1.57882 0.92642 1.19030 0.88550 0.82671 0.96252 1.45670 1.10682 1.04184 1.77427 1.16065 0.84853 0.81100 0.78079 1.90842 1.14539 1.83925 1.58785 1.47255 1.05184 1.05970 1.79119 1.21650 0.80939 1.00040 0.98455 1.22064 0.99956 0.94349 1.00229 1.21270 0.96062 0.95291 0.97523 1.23019 0.93034 0.97373 0.83716 0.91326 1.23444 0.95778 1.03330 0.96897 1.23127 0.99154 1.01764 0.95334 1.23094 0.85901 1.00718 0.92973 1.88471 1.35030 1.86557 1.19132 1.21917 0.94155 0.99662 1.00643 1.21341 1.00674 0.80016 0.97251 0.91640 0.96713 0.96892 0.77736 0.91871 0.90191 0.90511 0.91026 0.90080 0.90045 0.89579 0.90123 0.90764 0.91403 0.91699 0.90651 0.91227 0.88970 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.65 55.43 0.76 -27.15 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.78 29.90 -169.99 -5.08 19.70 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.62 -17.57 9.28 -34.44 -0.32 -17.89 16 8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 9 C 0.26 7.11 4.74 -5.19 -0.02 7.09 16 10 N -0.73 -16.62 5.46 -66.41 -0.36 -16.98 16 11 C 0.70 15.48 8.30 -86.91 -0.72 14.76 16 12 O -0.60 -15.74 15.77 5.29 0.08 -15.65 16 13 N -0.64 -10.56 2.97 -178.23 -0.53 -11.09 16 14 C 0.11 1.44 6.42 -3.48 -0.02 1.42 16 15 C -0.13 -1.38 4.94 -26.39 -0.13 -1.51 16 16 C -0.08 -0.80 2.10 -90.58 -0.19 -0.99 16 17 C 0.09 0.77 3.17 -25.70 -0.08 0.68 16 18 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 19 C -0.16 -1.07 6.47 -24.42 -0.16 -1.23 16 20 C -0.16 -0.99 7.02 -24.72 -0.17 -1.17 16 21 C 0.05 0.42 7.80 37.88 0.30 0.72 16 22 O -0.37 -4.22 9.86 -35.23 -0.35 -4.57 16 23 C -0.13 -1.46 5.23 -26.61 -0.14 -1.60 16 24 C 0.13 1.84 6.44 -3.71 -0.02 1.82 16 25 H 0.27 8.58 7.22 -40.82 -0.29 8.29 16 26 H 0.01 0.45 8.01 -51.93 -0.42 0.03 16 27 H 0.01 0.39 8.01 -51.93 -0.42 -0.02 16 28 H 0.39 7.77 5.81 -40.82 -0.24 7.54 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.06 5.64 -51.93 -0.29 0.77 16 31 H 0.08 1.02 7.70 -51.93 -0.40 0.62 16 32 H 0.07 0.62 6.03 -51.93 -0.31 0.31 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.60 5.79 -51.93 -0.30 0.30 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.51 7.00 -51.93 -0.36 1.14 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -34.64 334.34 -9.09 -43.74 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.86 Total: 4.34 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.79 Total: 2.64 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.13 Total: -55.22 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.26 Total: -20.22 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.64 -9.09 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336105204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.614 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds