Wall clock time and date at job start Tue Mar 31 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99900 * 2 1 4 4 H 1.48499 * 109.46729 * 269.99765 * 3 2 1 5 5 H 1.48504 * 109.47065 * 29.99363 * 3 2 1 6 6 H 1.48499 * 109.47397 * 149.99741 * 3 2 1 7 7 C 1.37876 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99996 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47245 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00083 * 179.97438 * 10 9 7 12 12 O 1.21580 * 119.99971 * 5.08071 * 11 10 9 13 13 N 1.34780 * 119.99784 * 185.06886 * 11 10 9 14 14 C 1.46925 * 120.62432 * 174.96719 * 13 11 10 15 15 C 1.53201 * 108.77545 * 233.63111 * 14 13 11 16 16 C 1.53032 * 109.31299 * 305.37291 * 15 14 13 17 17 C 1.53001 * 109.45930 * 181.38540 * 16 15 14 18 18 H 1.09004 * 110.54656 * 302.87257 * 17 16 15 19 19 C 1.55004 * 110.61712 * 180.02562 * 17 16 15 20 20 C 1.54816 * 102.08805 * 204.47372 * 19 17 16 21 21 C 1.54099 * 104.18696 * 20.87781 * 20 19 17 22 22 O 1.43739 * 107.42186 * 1.95610 * 21 20 19 23 23 C 1.53046 * 109.54380 * 61.36037 * 16 15 14 24 24 C 1.46922 * 120.63252 * 354.99557 * 13 11 10 25 25 H 0.96994 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.46844 * 59.99947 * 9 7 2 27 27 H 1.09005 * 109.47202 * 300.00005 * 9 7 2 28 28 H 0.97006 * 119.99480 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.58581 * 113.85082 * 14 13 11 30 30 H 1.08997 * 109.59343 * 353.41944 * 14 13 11 31 31 H 1.08993 * 109.49727 * 185.41535 * 15 14 13 32 32 H 1.09005 * 109.51705 * 65.33988 * 15 14 13 33 33 H 1.09004 * 109.46029 * 301.35124 * 16 15 14 34 34 H 1.08994 * 110.91103 * 86.27498 * 19 17 16 35 35 H 1.09002 * 110.90263 * 322.66574 * 19 17 16 36 36 H 1.09001 * 110.48599 * 262.20064 * 20 19 17 37 37 H 1.08999 * 110.60110 * 139.60903 * 20 19 17 38 38 H 1.09003 * 109.87800 * 121.46055 * 21 20 19 39 39 H 1.09009 * 109.87687 * 242.45494 * 21 20 19 40 40 H 1.09002 * 109.49402 * 58.58297 * 23 16 15 41 41 H 1.08994 * 109.49879 * 178.68542 * 23 16 15 42 42 H 1.09000 * 109.58472 * 246.14732 * 24 13 11 43 43 H 1.08996 * 109.58703 * 6.58031 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7539 -4.8833 0.0025 12 8 0.5625 -5.1070 -0.0911 13 7 2.6254 -5.9061 0.1068 14 6 2.1453 -7.2901 0.2197 15 6 2.7771 -7.9317 1.4591 16 6 4.2995 -7.7992 1.3772 17 6 4.9358 -8.4693 2.5966 18 1 4.5504 -8.0324 3.5179 19 6 6.4802 -8.3501 2.5411 20 6 6.9296 -9.5519 3.4074 21 6 5.7118 -10.4962 3.4039 22 8 4.7043 -9.8961 2.5728 23 6 4.6838 -6.3180 1.3509 24 6 4.0736 -5.6582 0.1103 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 3.1568 -3.4353 0.0021 29 1 2.4341 -7.8508 -0.6693 30 1 1.0599 -7.2934 0.3197 31 1 2.5054 -8.9863 1.5014 32 1 2.4156 -7.4267 2.3550 33 1 4.6578 -8.2833 0.4687 34 1 6.8138 -7.4091 2.9784 35 1 6.8416 -8.4516 1.5177 36 1 7.1571 -9.2265 4.4225 37 1 7.7947 -10.0433 2.9623 38 1 5.9969 -11.4671 2.9984 39 1 5.3324 -10.6156 4.4188 40 1 4.3043 -5.8277 2.2475 41 1 5.7692 -6.2243 1.3161 42 1 4.5197 -6.0858 -0.7876 43 1 4.2605 -4.5848 0.1381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336105205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:24 Heat of formation + Delta-G solvation = -85.842091 kcal Electronic energy + Delta-G solvation = -22606.869423 eV Core-core repulsion = 19265.479821 eV Total energy + Delta-G solvation = -3341.389602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25804 -39.35182 -37.06744 -34.21964 -33.34649 -32.48893 -32.12992 -30.82684 -28.87507 -27.07348 -24.94696 -23.43784 -22.64908 -21.97410 -21.24363 -20.44271 -19.10171 -18.09042 -16.63176 -16.26655 -15.87610 -15.66442 -15.51616 -14.97740 -14.64137 -14.30685 -13.90045 -13.75208 -13.45246 -13.33451 -13.05458 -12.99612 -12.32203 -12.07307 -11.99070 -11.85582 -11.76319 -11.63078 -11.25673 -11.13242 -10.93640 -10.88262 -10.84128 -10.61371 -10.30945 -10.24732 -9.88276 -9.34911 -9.28383 -8.70496 -8.34070 -7.67538 -6.13033 -4.19564 3.24389 3.25878 3.32413 3.35164 3.55638 3.94966 4.24162 4.33037 4.36267 4.56597 4.63004 4.72781 4.84089 4.88464 4.96443 5.06883 5.19000 5.22923 5.31778 5.38683 5.40966 5.44454 5.48499 5.56019 5.58257 5.71244 5.79215 5.81908 5.88291 5.96124 6.06655 6.13551 6.33218 6.67725 6.86807 7.19901 7.55222 7.58759 7.61226 7.90461 8.05505 8.79058 8.94891 9.36539 9.51350 10.97284 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.003280 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.842251 B = 8535.004327 C = 9249.999974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.697 3.303 12 O -0.599 6.599 13 N -0.639 5.639 14 C 0.132 3.868 15 C -0.126 4.126 16 C -0.077 4.077 17 C 0.081 3.919 18 H 0.070 0.930 19 C -0.150 4.150 20 C -0.158 4.158 21 C 0.046 3.954 22 O -0.372 6.372 23 C -0.129 4.129 24 C 0.115 3.885 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.385 0.615 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.785 -18.576 5.607 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.385 5.385 11 C 0.398 3.602 12 O -0.478 6.478 13 N -0.378 5.378 14 C 0.008 3.992 15 C -0.165 4.165 16 C -0.095 4.095 17 C 0.024 3.976 18 H 0.088 0.912 19 C -0.187 4.187 20 C -0.195 4.195 21 C -0.031 4.031 22 O -0.292 6.292 23 C -0.167 4.167 24 C -0.009 4.009 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.220 0.780 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.528 -18.658 5.437 24.264 hybrid contribution 1.201 1.069 0.235 1.625 sum 15.728 -17.589 5.672 24.268 Atomic orbital electron populations 1.69977 1.06083 1.27231 1.48982 1.24943 0.94905 0.99366 0.94809 0.86423 0.79594 0.82726 0.78189 1.20488 1.21025 1.19787 1.21217 0.93190 0.90475 1.53053 0.92054 1.18973 0.87837 0.81125 0.97568 1.45877 1.10756 1.04470 1.77364 1.16068 0.84815 0.81073 0.78224 1.90852 1.14487 1.83865 1.58608 1.47310 1.05110 1.06118 1.79290 1.21329 1.00709 0.80570 0.96555 1.21945 0.94188 1.01343 0.99014 1.21131 0.96045 0.95089 0.97283 1.23249 0.93865 0.81889 0.98595 0.91215 1.23181 0.95869 0.98631 1.01066 1.22941 0.98887 0.96717 1.00988 1.23106 0.87808 0.97042 0.95126 1.88928 1.51915 1.18970 1.69347 1.21966 1.00635 0.94676 0.99465 1.21512 0.81177 1.00838 0.97362 0.92477 0.95698 0.95880 0.78018 0.92404 0.88939 0.90358 0.91601 0.90271 0.90036 0.90290 0.90792 0.90595 0.90114 0.92599 0.91047 0.90696 0.91794 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 10 N -0.73 -16.20 5.46 -66.41 -0.36 -16.56 16 11 C 0.70 15.11 8.30 -86.92 -0.72 14.38 16 12 O -0.60 -15.52 15.78 5.30 0.08 -15.44 16 13 N -0.64 -10.32 2.97 -178.50 -0.53 -10.85 16 14 C 0.13 1.87 6.42 -3.71 -0.02 1.84 16 15 C -0.13 -1.49 5.29 -26.61 -0.14 -1.63 16 16 C -0.08 -0.76 1.95 -90.58 -0.18 -0.94 16 17 C 0.08 0.75 2.84 -25.67 -0.07 0.68 16 18 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 19 C -0.15 -1.08 5.45 -24.72 -0.13 -1.21 16 20 C -0.16 -1.00 7.01 -25.20 -0.18 -1.18 16 21 C 0.05 0.36 7.69 37.73 0.29 0.65 16 22 O -0.37 -3.94 10.87 -35.23 -0.38 -4.32 16 23 C -0.13 -1.27 5.16 -26.61 -0.14 -1.41 16 24 C 0.12 1.40 6.43 -3.71 -0.02 1.37 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.38 7.34 5.78 -40.82 -0.24 7.11 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.51 7.03 -51.93 -0.37 1.14 16 31 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.52 8.01 -51.93 -0.42 0.10 16 35 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.57 7.13 -51.93 -0.37 0.20 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.02 5.57 -51.93 -0.29 0.73 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -33.39 338.99 -9.24 -42.63 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.11 Total: 2.88 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.76 Total: 6.29 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.16 Total: -53.07 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.30 Total: -19.76 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.39 -9.24 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336105205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.213 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds