Wall clock time and date at job start Tue Mar 31 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99713 * 2 1 4 4 H 1.48498 * 109.47035 * 269.99619 * 3 2 1 5 5 H 1.48495 * 109.47072 * 29.99533 * 3 2 1 6 6 H 1.48495 * 109.46927 * 149.99905 * 3 2 1 7 7 C 1.37874 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99926 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99740 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99711 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00322 * 5.07738 * 11 10 9 13 13 N 1.34783 * 119.99772 * 185.07114 * 11 10 9 14 14 C 1.47211 * 120.82540 * 355.08410 * 13 11 10 15 15 C 1.53197 * 108.86969 * 126.30627 * 14 13 11 16 16 C 1.53057 * 109.31308 * 54.68618 * 15 14 13 17 17 C 1.52936 * 109.54823 * 298.76432 * 16 15 14 18 18 C 1.53084 * 109.58375 * 181.30858 * 17 16 15 19 19 C 1.53114 * 109.16516 * 176.85084 * 18 17 16 20 20 O 1.42901 * 109.40853 * 302.52354 * 19 18 17 21 21 C 1.42902 * 114.11787 * 61.19854 * 20 19 18 22 22 C 1.53087 * 109.57126 * 301.11714 * 17 16 15 23 23 C 1.46946 * 120.63900 * 174.96206 * 13 11 10 24 24 H 0.97003 * 120.00273 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47056 * 60.00007 * 9 7 2 26 26 H 1.08992 * 109.47041 * 299.99612 * 9 7 2 27 27 H 0.96996 * 120.00048 * 0.02562 * 10 9 7 28 28 H 1.08997 * 109.53205 * 6.49913 * 14 13 11 29 29 H 1.08998 * 109.67219 * 246.19589 * 14 13 11 30 30 H 1.08998 * 109.50096 * 294.73681 * 15 14 13 31 31 H 1.08998 * 109.49505 * 174.63714 * 15 14 13 32 32 H 1.09004 * 109.45687 * 178.73792 * 16 15 14 33 33 H 1.09000 * 109.44763 * 58.77953 * 16 15 14 34 34 H 1.08996 * 109.51893 * 296.75777 * 18 17 16 35 35 H 1.08997 * 109.52367 * 56.94719 * 18 17 16 36 36 H 1.08999 * 109.48089 * 182.54328 * 19 18 17 37 37 H 1.09003 * 109.47736 * 62.50484 * 19 18 17 38 38 H 1.08998 * 109.48096 * 178.80871 * 21 20 19 39 39 H 1.09000 * 109.48299 * 58.76387 * 21 20 19 40 40 H 1.08995 * 109.52181 * 303.03053 * 22 17 16 41 41 H 1.09002 * 109.51903 * 63.15770 * 22 17 16 42 42 H 1.08992 * 109.59017 * 113.71315 * 23 13 11 43 43 H 1.09004 * 109.58887 * 353.41970 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5752 0.0022 11 6 5.3250 -2.8214 0.0024 12 8 6.1144 -1.9012 0.0948 13 7 5.7752 -4.0877 -0.0998 14 6 4.8383 -5.2232 -0.1043 15 6 5.1072 -6.0824 -1.3438 16 6 6.5829 -6.4878 -1.3684 17 6 7.4564 -5.2350 -1.4476 18 6 8.9314 -5.6407 -1.5051 19 6 9.7925 -4.3845 -1.6634 20 8 9.3919 -3.6794 -2.8400 21 6 8.0348 -3.2324 -2.8193 22 6 7.1027 -4.4420 -2.7084 23 6 7.2140 -4.3643 -0.2119 24 1 -0.4851 0.8401 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 3.3696 -3.3124 0.0021 28 1 3.8144 -4.8508 -0.1331 29 1 4.9840 -5.8227 0.7943 30 1 4.8722 -5.5101 -2.2412 31 1 4.4848 -6.9765 -1.3086 32 1 6.7719 -7.1179 -2.2376 33 1 6.8225 -7.0407 -0.4602 34 1 9.2038 -6.1553 -0.5837 35 1 9.0941 -6.3032 -2.3552 36 1 10.8406 -4.6709 -1.7503 37 1 9.6618 -3.7422 -0.7924 38 1 7.8171 -2.6888 -3.7386 39 1 7.8814 -2.5755 -1.9632 40 1 7.2252 -5.0779 -3.5850 41 1 6.0689 -4.1019 -2.6466 42 1 7.5553 -4.8912 0.6791 43 1 7.7597 -3.4261 -0.3132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336312412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:19 Heat of formation + Delta-G solvation = -79.310834 kcal Electronic energy + Delta-G solvation = -23787.482751 eV Core-core repulsion = 20446.376366 eV Total energy + Delta-G solvation = -3341.106385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92382 -39.01686 -37.03273 -34.41069 -33.81987 -32.24621 -31.97189 -31.15328 -28.35394 -27.42347 -25.25448 -24.04874 -23.49408 -22.04264 -21.31541 -19.71039 -18.57077 -17.97912 -16.52309 -16.28792 -16.05737 -15.74884 -15.15331 -15.03118 -14.62944 -14.47118 -14.21058 -14.05140 -13.62578 -13.32153 -13.13928 -12.76915 -12.63879 -12.36226 -12.15879 -12.11347 -11.69081 -11.45705 -11.20263 -11.07891 -10.95494 -10.80506 -10.75768 -10.36914 -10.23586 -9.95922 -9.52432 -9.45467 -9.40609 -8.77567 -8.51421 -7.95204 -6.20839 -4.22733 3.07040 3.27910 3.35067 3.43896 3.73509 3.84804 4.31223 4.34738 4.49380 4.58778 4.61748 4.87705 4.91981 5.00082 5.05075 5.14949 5.19029 5.21468 5.30905 5.45327 5.53014 5.56578 5.62907 5.67004 5.69034 5.76666 5.77896 5.87107 5.93589 5.99171 6.05384 6.20572 6.24701 6.63831 6.82122 7.11926 7.16614 7.24998 7.39494 7.51390 8.25733 8.66104 8.79417 9.18506 9.40753 10.91123 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.004619 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.441016 B = 6061.065321 C = 6699.752620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.699 3.301 12 O -0.601 6.601 13 N -0.634 5.634 14 C 0.111 3.889 15 C -0.138 4.138 16 C -0.104 4.104 17 C -0.075 4.075 18 C -0.141 4.141 19 C 0.057 3.943 20 O -0.385 6.385 21 C 0.054 3.946 22 C -0.139 4.139 23 C 0.136 3.864 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.017 0.983 27 H 0.391 0.609 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.332 -15.068 -3.196 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.115 3.885 10 N -0.377 5.377 11 C 0.401 3.599 12 O -0.481 6.481 13 N -0.373 5.373 14 C -0.012 4.012 15 C -0.176 4.176 16 C -0.141 4.141 17 C -0.076 4.076 18 C -0.179 4.179 19 C -0.020 4.020 20 O -0.304 6.304 21 C -0.022 4.022 22 C -0.177 4.177 23 C 0.013 3.987 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.227 0.773 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.809 -14.171 -3.279 21.483 hybrid contribution -0.338 0.339 0.222 0.527 sum 15.471 -13.833 -3.057 20.977 Atomic orbital electron populations 1.69882 1.06207 1.27410 1.49566 1.24771 0.94768 0.99130 0.93868 0.86822 0.80643 0.83220 0.79053 1.19862 1.20924 1.18425 1.21079 0.88553 0.95138 1.53211 0.90397 1.19358 0.94824 0.77713 0.96591 1.45570 1.03786 1.11024 1.77338 1.16011 0.83625 0.82168 0.78124 1.90845 1.55449 1.42928 1.58882 1.47268 1.06530 1.04552 1.78929 1.21635 0.93657 0.88076 0.97872 1.21972 0.96630 0.99959 0.99025 1.21513 0.94439 0.96203 1.01982 1.20918 0.94871 0.95941 0.95875 1.22183 0.94269 0.98648 1.02786 1.22598 0.98403 0.92418 0.88597 1.87897 1.28325 1.74303 1.39830 1.22698 0.81030 0.95544 1.02961 1.22174 1.00828 0.97626 0.97038 1.21495 0.81210 1.00297 0.95744 0.92278 0.95872 0.96497 0.77286 0.89962 0.91682 0.90959 0.90770 0.91759 0.91749 0.90787 0.90813 0.89113 0.92879 0.89098 0.91803 0.91416 0.90271 0.92277 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.54 -14.90 9.83 -34.44 -0.34 -15.24 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.24 5.93 4.50 -5.19 -0.02 5.91 16 10 N -0.72 -15.04 5.46 -66.41 -0.36 -15.40 16 11 C 0.70 13.85 8.30 -86.91 -0.72 13.13 16 12 O -0.60 -14.05 15.79 5.29 0.08 -13.97 16 13 N -0.63 -9.38 2.39 -178.31 -0.43 -9.81 16 14 C 0.11 1.29 6.44 -3.55 -0.02 1.26 16 15 C -0.14 -1.31 5.75 -26.60 -0.15 -1.46 16 16 C -0.10 -0.91 4.72 -26.73 -0.13 -1.04 16 17 C -0.07 -0.77 0.52 -154.40 -0.08 -0.85 16 18 C -0.14 -1.24 4.92 -26.63 -0.13 -1.37 16 19 C 0.06 0.57 6.57 37.22 0.24 0.82 16 20 O -0.38 -5.00 10.76 -35.23 -0.38 -5.38 16 21 C 0.05 0.71 6.57 37.21 0.24 0.96 16 22 C -0.14 -1.64 4.37 -26.63 -0.12 -1.76 16 23 C 0.14 1.74 4.50 -3.75 -0.02 1.73 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 26 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 27 H 0.39 7.24 5.80 -40.82 -0.24 7.00 16 28 H 0.08 0.99 5.59 -51.93 -0.29 0.70 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.78 6.43 -51.93 -0.33 0.44 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.56 6.74 -51.93 -0.35 0.21 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.99 6.49 -51.93 -0.34 0.65 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.07 6.10 -51.93 -0.32 0.75 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.41 3.95 -51.93 -0.20 1.21 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -32.22 322.46 -8.10 -40.32 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.64 Total: 4.00 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.34 Total: 4.21 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.02 Total: -50.94 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.30 Total: -19.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.22 -8.10 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336312412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.989 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds