Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00393 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99788 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00528 * 179.97438 * 12 11 10 15 15 C 1.47594 * 125.76304 * 0.02699 * 14 12 11 16 16 C 1.54954 * 104.85047 * 204.01733 * 15 14 12 17 17 C 1.55276 * 101.64827 * 323.30148 * 16 15 14 18 18 H 1.09002 * 110.75660 * 153.37860 * 17 16 15 19 19 O 1.42899 * 110.75128 * 276.73538 * 17 16 15 20 20 C 1.46432 * 125.76890 * 179.72078 * 14 12 11 21 21 C 1.53734 * 110.61101 * 58.40519 * 20 14 12 22 22 C 1.55012 * 104.06514 * 215.78202 * 21 20 14 23 23 C 1.54933 * 102.81688 * 37.48151 * 22 21 20 24 24 C 1.53335 * 110.86191 * 299.68362 * 20 14 12 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 0.97000 * 120.00040 * 359.97438 * 11 10 9 31 31 H 1.08993 * 110.36897 * 322.86548 * 15 14 12 32 32 H 1.09002 * 110.36395 * 85.18076 * 15 14 12 33 33 H 1.09003 * 110.99249 * 81.38990 * 16 15 14 34 34 H 1.09003 * 110.99394 * 205.17155 * 16 15 14 35 35 H 0.96704 * 113.99687 * 298.54350 * 19 17 16 36 36 H 1.09008 * 110.50683 * 334.42529 * 21 20 14 37 37 H 1.08997 * 110.51667 * 97.12894 * 21 20 14 38 38 H 1.08999 * 110.74199 * 279.15092 * 22 21 20 39 39 H 1.09000 * 110.89848 * 155.88700 * 22 21 20 40 40 H 1.09002 * 110.48185 * 203.67665 * 23 22 21 41 41 H 1.09002 * 110.59260 * 81.09779 * 23 22 21 42 42 H 1.09004 * 110.07111 * 239.87819 * 24 20 14 43 43 H 1.09005 * 110.07394 * 1.35930 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5126 -4.9308 -0.0168 12 6 2.1863 -6.0980 -0.0226 13 8 3.4023 -6.0980 -0.0220 14 7 1.5125 -7.2652 -0.0279 15 6 0.0440 -7.4134 -0.0286 16 6 -0.2138 -8.8172 0.5746 17 6 0.9726 -9.6318 -0.0086 18 1 1.2233 -10.4692 0.6426 19 8 0.6729 -10.0877 -1.3293 20 6 2.1134 -8.6005 -0.0402 21 6 3.0286 -8.7933 1.1799 22 6 4.1954 -9.6607 0.6423 23 6 4.4066 -9.1043 -0.7881 24 6 2.9789 -8.7982 -1.2904 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.5426 -4.9308 -0.0168 31 1 -0.4153 -6.6439 0.5916 32 1 -0.3420 -7.3615 -1.0467 33 1 -0.1698 -8.7885 1.6634 34 1 -1.1685 -9.2190 0.2349 35 1 -0.0909 -10.6789 -1.3775 36 1 3.3996 -7.8317 1.5348 37 1 2.4988 -9.3166 1.9759 38 1 3.9112 -10.7125 0.6093 39 1 5.0923 -9.5234 1.2463 40 1 4.8819 -9.8527 -1.4222 41 1 5.0048 -8.1934 -0.7607 42 1 2.6016 -9.6352 -1.8780 43 1 2.9800 -7.8894 -1.8923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -86.478294 kcal Electronic energy + Delta-G solvation = -23222.101361 eV Core-core repulsion = 19880.684171 eV Total energy + Delta-G solvation = -3341.417190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89795 -38.43030 -36.38406 -35.14152 -34.65985 -32.74867 -30.91409 -29.44342 -28.72264 -28.39166 -24.87589 -23.94438 -22.53186 -21.34739 -20.66475 -20.30043 -18.80427 -17.50417 -17.28706 -16.39864 -16.30206 -15.40267 -15.14871 -14.73320 -14.64327 -14.38293 -14.11495 -13.68444 -13.28408 -13.16493 -12.70377 -12.58574 -12.42415 -12.25428 -11.92962 -11.46384 -11.14004 -11.11848 -11.03079 -11.01382 -10.92927 -10.60195 -10.57485 -10.37050 -10.28539 -10.21081 -9.75307 -9.49371 -9.20473 -8.61724 -8.42979 -8.11375 -6.07405 -4.09689 2.89678 3.29942 3.37473 3.43161 3.59543 3.83699 4.20529 4.28235 4.41993 4.58478 4.67761 4.77037 4.82444 5.04939 5.19816 5.25801 5.29877 5.44346 5.50912 5.56903 5.67248 5.69635 5.80576 5.83400 5.90045 5.93065 6.06460 6.21762 6.34279 6.43184 6.44822 6.54590 6.70777 6.80807 7.07191 7.33890 7.40706 7.60132 7.66072 7.92207 8.28740 8.45951 8.95789 9.07910 9.54974 11.04387 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.003615 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.345930 B = 7742.936178 C = 8353.127450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.738 5.738 12 C 0.718 3.282 13 O -0.586 6.586 14 N -0.632 5.632 15 C 0.102 3.898 16 C -0.164 4.164 17 C 0.102 3.898 18 H 0.078 0.922 19 O -0.551 6.551 20 C 0.191 3.809 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.261 0.739 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.391 0.609 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.376 0.624 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 -23.377 1.036 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.019 3.981 11 N -0.392 5.392 12 C 0.420 3.580 13 O -0.464 6.464 14 N -0.371 5.371 15 C -0.022 4.022 16 C -0.203 4.203 17 C 0.042 3.958 18 H 0.096 0.904 19 O -0.357 6.357 20 C 0.105 3.895 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.157 4.157 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.224 0.776 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.088 -22.735 0.887 22.752 hybrid contribution -0.807 0.728 0.171 1.100 sum -0.895 -22.007 1.059 22.051 Atomic orbital electron populations 1.69971 1.06096 1.26699 1.50627 1.24997 0.94886 0.99400 0.95037 0.86459 0.80204 0.83341 0.77581 1.19558 1.20950 1.20961 1.21097 0.93306 0.90338 1.51015 0.92166 1.19323 0.94271 0.91130 0.97732 1.21573 0.95605 0.80382 1.00584 1.45580 1.09823 1.05182 1.78623 1.15520 0.85093 0.79318 0.78050 1.90878 1.11224 1.85963 1.58366 1.47602 1.05954 1.04189 1.79324 1.22219 0.81899 0.97122 1.00911 1.23500 0.99042 0.96135 1.01573 1.22723 0.93963 0.95056 0.84038 0.90421 1.86578 1.52707 1.68659 1.27762 1.20897 0.91808 0.80434 0.96344 1.22684 0.96082 1.01701 0.96084 1.22425 0.98056 0.98304 0.96841 1.22323 0.97105 1.00807 0.95458 1.22262 0.94079 1.02621 0.96693 0.92951 0.96055 0.96025 0.92832 0.92832 0.77541 0.90751 0.91322 0.89704 0.89517 0.77650 0.89389 0.91958 0.92012 0.91589 0.92366 0.90852 0.89902 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.14 5.61 -4.05 -0.02 3.12 16 11 N -0.74 -13.95 5.52 -65.23 -0.36 -14.31 16 12 C 0.72 13.41 7.61 -86.92 -0.66 12.74 16 13 O -0.59 -12.70 14.71 5.28 0.08 -12.62 16 14 N -0.63 -9.21 2.81 -161.37 -0.45 -9.67 16 15 C 0.10 1.13 6.58 -2.41 -0.02 1.12 16 16 C -0.16 -1.29 6.81 -24.49 -0.17 -1.46 16 17 C 0.10 0.91 3.63 -25.10 -0.09 0.82 16 18 H 0.08 0.57 7.60 -51.93 -0.39 0.17 16 19 O -0.55 -4.77 11.28 -35.23 -0.40 -5.17 16 20 C 0.19 2.42 0.71 -130.87 -0.09 2.33 16 21 C -0.13 -1.58 5.73 -25.29 -0.14 -1.72 16 22 C -0.12 -1.31 6.91 -24.65 -0.17 -1.48 16 23 C -0.12 -1.53 6.84 -24.97 -0.17 -1.70 16 24 C -0.12 -1.63 5.43 -25.82 -0.14 -1.77 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.39 6.58 6.97 -40.82 -0.28 6.29 16 31 H 0.07 0.79 7.31 -51.93 -0.38 0.41 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.38 1.50 9.11 45.56 0.42 1.91 16 36 H 0.09 1.39 6.52 -51.92 -0.34 1.05 16 37 H 0.06 0.63 7.61 -51.93 -0.40 0.24 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 43 H 0.07 1.13 7.40 -51.93 -0.38 0.75 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -33.21 338.31 -8.82 -42.03 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.27 Total: 4.90 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.23 Total: -1.20 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.08 Total: -49.62 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.32 Total: -17.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.21 -8.82 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.445 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds