Wall clock time and date at job start Tue Mar 31 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47011 * 239.99547 * 3 2 1 5 5 H 1.48505 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47630 * 119.99433 * 3 2 1 7 7 C 1.37881 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99764 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46616 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46789 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99733 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00059 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00037 * 179.97438 * 12 11 10 15 15 C 1.47591 * 125.76869 * 0.05089 * 14 12 11 16 16 C 1.54958 * 104.84790 * 203.99736 * 15 14 12 17 17 C 1.55283 * 101.64601 * 323.29143 * 16 15 14 18 18 H 1.09000 * 110.74902 * 276.72919 * 17 16 15 19 19 O 1.42897 * 110.74711 * 153.37479 * 17 16 15 20 20 C 1.46443 * 125.76968 * 179.97438 * 14 12 11 21 21 C 1.53336 * 110.84189 * 299.71274 * 20 14 12 22 22 C 1.54408 * 106.39362 * 120.91275 * 21 20 14 23 23 C 1.54939 * 104.32060 * 336.39018 * 22 21 20 24 24 C 1.53738 * 110.59068 * 58.40631 * 20 14 12 25 25 H 0.96998 * 119.99993 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47069 * 60.00244 * 9 7 2 27 27 H 1.08997 * 109.47505 * 299.99495 * 9 7 2 28 28 H 1.09003 * 109.46908 * 60.00452 * 10 9 7 29 29 H 1.08997 * 109.47038 * 300.00108 * 10 9 7 30 30 H 0.97002 * 119.99966 * 0.02562 * 11 10 9 31 31 H 1.09002 * 110.35920 * 322.83800 * 15 14 12 32 32 H 1.08997 * 110.36544 * 85.03922 * 15 14 12 33 33 H 1.08999 * 110.99275 * 81.38682 * 16 15 14 34 34 H 1.09007 * 110.98791 * 205.16239 * 16 15 14 35 35 H 0.96699 * 114.00172 * 66.63675 * 19 17 16 36 36 H 1.08998 * 110.07481 * 1.67411 * 21 20 14 37 37 H 1.09003 * 110.11793 * 240.17132 * 21 20 14 38 38 H 1.09002 * 110.48643 * 95.13956 * 22 21 20 39 39 H 1.08998 * 110.48237 * 217.64524 * 22 21 20 40 40 H 1.09003 * 110.73848 * 156.04952 * 23 22 21 41 41 H 1.08997 * 110.74256 * 279.37684 * 23 22 21 42 42 H 1.09002 * 110.51349 * 20.99332 * 24 20 14 43 43 H 1.09005 * 110.51149 * 143.56379 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0007 13 8 3.4026 -6.0980 0.0003 14 7 1.5129 -7.2652 0.0018 15 6 0.0444 -7.4136 0.0024 16 6 -0.2128 -8.8145 0.6127 17 6 0.9733 -9.6318 0.0327 18 1 0.7441 -9.9846 -0.9728 19 8 1.3026 -10.7253 0.8916 20 6 2.1139 -8.6006 0.0010 21 6 2.9837 -8.8067 -1.2449 22 6 4.4082 -9.1157 -0.7357 23 6 4.4515 -8.4937 0.6827 24 6 3.0252 -8.7841 1.2255 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6044 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 0.5428 -4.9308 0.0011 31 1 -0.4145 -6.6410 0.6194 32 1 -0.3422 -7.3646 -1.0155 33 1 -0.1683 -8.7804 1.7013 34 1 -1.1677 -9.2179 0.2755 35 1 0.6155 -11.4035 0.9460 36 1 2.9911 -7.9001 -1.8500 37 1 2.6061 -9.6443 -1.8314 38 1 4.5700 -10.1925 -0.6851 39 1 5.1532 -8.6488 -1.3799 40 1 5.2079 -8.9835 1.2960 41 1 4.6330 -7.4204 0.6282 42 1 2.7622 -8.0718 2.0076 43 1 2.9583 -9.8050 1.6019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:40 Heat of formation + Delta-G solvation = -81.317879 kcal Electronic energy + Delta-G solvation = -23282.296512 eV Core-core repulsion = 19941.103095 eV Total energy + Delta-G solvation = -3341.193417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89906 -38.39467 -36.26303 -35.38283 -34.61264 -32.75099 -30.87761 -29.36379 -28.71672 -28.40589 -24.82850 -23.89951 -22.36504 -21.37393 -20.71965 -20.45988 -18.77327 -17.60087 -17.26075 -16.37697 -15.77752 -15.63044 -15.29811 -14.75831 -14.55606 -14.43280 -14.14003 -13.72731 -13.37420 -13.33421 -12.70452 -12.64423 -12.26375 -11.99518 -11.97110 -11.36778 -11.17393 -11.05835 -11.00107 -10.97888 -10.78211 -10.63794 -10.49939 -10.38381 -10.27990 -10.12423 -9.64960 -9.44517 -9.21334 -8.62300 -8.43529 -8.14892 -6.07967 -4.10549 2.80007 3.32478 3.36028 3.39771 3.58893 3.83427 4.24769 4.27115 4.41510 4.55777 4.65969 4.87728 4.89545 5.09594 5.15166 5.27623 5.29122 5.45272 5.50935 5.68508 5.74336 5.81555 5.83043 5.94210 5.97581 6.06512 6.14741 6.30945 6.37762 6.41777 6.43692 6.67380 6.75914 6.81794 7.16168 7.32708 7.36648 7.58615 7.64790 7.91275 8.27455 8.43429 8.94582 9.09059 9.54081 11.03712 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.003640 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.743093 B = 7691.211602 C = 8332.173584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.141 3.859 11 N -0.738 5.738 12 C 0.718 3.282 13 O -0.580 6.580 14 N -0.631 5.631 15 C 0.098 3.902 16 C -0.164 4.164 17 C 0.103 3.897 18 H 0.074 0.926 19 O -0.549 6.549 20 C 0.188 3.812 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.133 4.133 24 C -0.116 4.116 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.391 0.609 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.377 0.623 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 -22.444 -0.259 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.019 3.981 11 N -0.391 5.391 12 C 0.421 3.579 13 O -0.458 6.458 14 N -0.371 5.371 15 C -0.025 4.025 16 C -0.203 4.203 17 C 0.043 3.957 18 H 0.092 0.908 19 O -0.355 6.355 20 C 0.102 3.898 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.171 4.171 24 C -0.154 4.154 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.224 0.776 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.225 0.775 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.353 -21.833 -0.185 21.837 hybrid contribution -0.856 0.688 -0.133 1.106 sum -1.209 -21.145 -0.318 21.182 Atomic orbital electron populations 1.69946 1.06094 1.26942 1.50421 1.24990 0.94887 0.99379 0.94999 0.86570 0.79514 0.82643 0.78798 1.20107 1.21267 1.20098 1.21017 0.93236 0.90364 1.51328 0.92267 1.19313 0.94255 0.91100 0.97712 1.21582 0.95607 0.80328 1.00613 1.45584 1.09813 1.05154 1.78596 1.15517 0.85137 0.79267 0.77991 1.90763 1.11148 1.85582 1.58308 1.47571 1.05874 1.04164 1.79533 1.22214 0.82046 0.97422 1.00827 1.23516 0.98957 0.95570 1.02231 1.22664 0.93163 0.86805 0.93041 0.90804 1.86536 1.46746 1.33862 1.68347 1.20734 0.91946 0.80458 0.96688 1.22437 0.95585 1.01467 0.96379 1.22206 0.95906 0.99413 0.97451 1.22878 0.95539 1.04006 0.94634 1.22533 0.94773 1.02044 0.96088 0.92827 0.96058 0.96061 0.92804 0.92785 0.77560 0.90435 0.91368 0.89592 0.89787 0.77528 0.90929 0.92029 0.92520 0.92062 0.93074 0.87698 0.92117 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -13.53 5.52 -65.22 -0.36 -13.89 16 12 C 0.72 12.98 7.79 -86.92 -0.68 12.30 16 13 O -0.58 -12.07 12.35 5.29 0.07 -12.00 16 14 N -0.63 -8.91 2.75 -161.38 -0.44 -9.36 16 15 C 0.10 1.03 6.59 -2.41 -0.02 1.01 16 16 C -0.16 -1.32 6.82 -24.49 -0.17 -1.49 16 17 C 0.10 0.93 3.67 -25.11 -0.09 0.84 16 18 H 0.07 0.57 7.46 -51.93 -0.39 0.18 16 19 O -0.55 -4.60 11.15 -35.23 -0.39 -4.99 16 20 C 0.19 2.39 0.83 -130.88 -0.11 2.28 16 21 C -0.12 -1.55 5.71 -25.82 -0.15 -1.70 16 22 C -0.11 -1.46 6.83 -24.97 -0.17 -1.63 16 23 C -0.13 -1.95 6.37 -24.46 -0.16 -2.11 16 24 C -0.12 -1.62 5.51 -25.10 -0.14 -1.75 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.39 6.35 6.97 -40.82 -0.28 6.07 16 31 H 0.08 0.79 7.31 -51.93 -0.38 0.41 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.38 1.40 9.12 45.56 0.42 1.81 16 36 H 0.07 1.10 7.38 -51.93 -0.38 0.72 16 37 H 0.06 0.66 7.30 -51.93 -0.38 0.28 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.88 5.21 -51.93 -0.27 1.61 16 42 H 0.06 0.95 8.03 -51.93 -0.42 0.54 16 43 H 0.09 1.14 6.09 -51.93 -0.32 0.83 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -32.38 333.63 -8.81 -41.19 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.17 Total: 5.32 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.25 Total: -2.28 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.07 Total: -48.75 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.33 Total: -16.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.38 -8.81 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.131 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds