Wall clock time and date at job start Tue Mar 31 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99850 * 2 1 4 4 H 1.48493 * 109.47140 * 239.99962 * 3 2 1 5 5 H 1.48503 * 109.46839 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46975 * 120.00183 * 3 2 1 7 7 C 1.37881 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99931 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47428 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00419 * 180.02562 * 10 9 7 12 12 O 1.21582 * 119.99617 * 5.07012 * 11 10 9 13 13 N 1.34777 * 119.99945 * 185.07544 * 11 10 9 14 14 C 1.46927 * 120.63000 * 354.96023 * 13 11 10 15 15 C 1.53200 * 108.75826 * 126.30873 * 14 13 11 16 16 C 1.52986 * 109.32713 * 54.56997 * 15 14 13 17 17 C 1.53120 * 109.49090 * 58.96179 * 16 15 14 18 18 C 1.53107 * 109.14138 * 62.87420 * 17 16 15 19 19 O 1.42901 * 109.41088 * 57.53657 * 18 17 16 20 20 C 1.42905 * 114.13576 * 298.84336 * 19 18 17 21 21 C 1.53105 * 109.40372 * 61.15299 * 20 19 18 22 22 C 1.52952 * 109.67052 * 298.76293 * 16 15 14 23 23 C 1.46932 * 120.62749 * 174.94007 * 13 11 10 24 24 H 0.96992 * 120.00394 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47223 * 59.99917 * 9 7 2 26 26 H 1.08998 * 109.47371 * 300.00623 * 9 7 2 27 27 H 0.97008 * 120.00108 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.59212 * 6.52917 * 14 13 11 29 29 H 1.08998 * 109.70654 * 246.16096 * 14 13 11 30 30 H 1.08999 * 109.50017 * 294.61218 * 15 14 13 31 31 H 1.09007 * 109.51863 * 174.53674 * 15 14 13 32 32 H 1.09000 * 109.52359 * 302.97649 * 17 16 15 33 33 H 1.09003 * 109.52530 * 182.77325 * 17 16 15 34 34 H 1.09004 * 109.48066 * 177.51598 * 18 17 16 35 35 H 1.09005 * 109.48553 * 297.53803 * 18 17 16 36 36 H 1.08996 * 109.47956 * 181.13624 * 20 19 18 37 37 H 1.09001 * 109.47903 * 301.17587 * 20 19 18 38 38 H 1.09008 * 109.52687 * 62.36146 * 21 20 19 39 39 H 1.08993 * 109.52794 * 182.56027 * 21 20 19 40 40 H 1.08997 * 109.49689 * 181.16639 * 22 16 15 41 41 H 1.09004 * 109.49397 * 301.25417 * 22 16 15 42 42 H 1.08999 * 109.58299 * 353.45576 * 23 13 11 43 43 H 1.08999 * 109.58852 * 113.73946 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7540 -4.8834 -0.0025 12 8 0.5625 -5.1068 -0.0952 13 7 2.6256 -5.9063 0.0996 14 6 4.0738 -5.6583 0.1016 15 6 4.6849 -6.3184 1.3417 16 6 4.2995 -7.7986 1.3693 17 6 4.8068 -8.4824 0.0967 18 6 6.3359 -8.4118 0.0642 19 8 6.8649 -9.0270 1.2405 20 6 6.4621 -8.3995 2.4596 21 6 4.9381 -8.4697 2.5885 22 6 2.7781 -7.9331 1.4501 23 6 2.1456 -7.2904 0.2115 24 1 -0.4850 0.8399 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 3.1569 -3.4354 -0.0021 28 1 4.2608 -4.5848 0.1294 29 1 4.5208 -6.0841 -0.7967 30 1 4.3073 -5.8274 2.2386 31 1 5.7705 -6.2257 1.3060 32 1 4.3999 -7.9736 -0.7772 33 1 4.4901 -9.5254 0.0925 34 1 6.7054 -8.9355 -0.8175 35 1 6.6510 -7.3689 0.0260 36 1 6.9224 -8.9145 3.3028 37 1 6.7788 -7.3565 2.4535 38 1 4.6241 -9.5125 2.6364 39 1 4.6249 -7.9520 3.4950 40 1 2.5078 -8.9882 1.4905 41 1 2.4155 -7.4297 2.3464 42 1 1.0603 -7.2937 0.3121 43 1 2.4317 -7.8496 -0.6793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336387935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:15 Heat of formation + Delta-G solvation = -81.895200 kcal Electronic energy + Delta-G solvation = -23295.892406 eV Core-core repulsion = 19954.673954 eV Total energy + Delta-G solvation = -3341.218452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94059 -39.15568 -36.95753 -34.25230 -33.88005 -32.35652 -31.40463 -31.05950 -28.97979 -27.07892 -24.88409 -23.92855 -23.37424 -22.72192 -21.47636 -19.57562 -18.58751 -17.84193 -16.41233 -16.29069 -15.95094 -15.65053 -15.27634 -14.87290 -14.78424 -14.61662 -14.57259 -13.94492 -13.57537 -13.26225 -13.01739 -12.66653 -12.51483 -12.23932 -12.01591 -11.89493 -11.73128 -11.55200 -11.28445 -10.96511 -10.91585 -10.87459 -10.77197 -10.55402 -10.30444 -10.26276 -9.57203 -9.38539 -9.32476 -8.72072 -8.35630 -7.70482 -6.14636 -4.21411 3.20020 3.25716 3.30904 3.32977 3.65688 3.89668 4.31284 4.38206 4.38540 4.48340 4.69953 4.77269 4.95129 4.96776 5.04907 5.07479 5.21243 5.22350 5.26532 5.32807 5.35040 5.46255 5.54334 5.59129 5.68480 5.70587 5.81287 5.81914 5.89988 5.96476 6.05761 6.13294 6.27433 6.80982 6.96664 7.15820 7.52312 7.55362 7.58534 7.87410 8.03236 8.76415 8.91568 9.33410 9.48650 10.95613 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.003773 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.697663 B = 7420.109991 C = 8044.565783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.697 3.303 12 O -0.599 6.599 13 N -0.636 5.636 14 C 0.113 3.887 15 C -0.130 4.130 16 C -0.056 4.056 17 C -0.149 4.149 18 C 0.059 3.941 19 O -0.385 6.385 20 C 0.059 3.941 21 C -0.144 4.144 22 C -0.122 4.122 23 C 0.131 3.869 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.023 0.977 27 H 0.385 0.615 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.690 -17.501 3.070 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.384 5.384 11 C 0.398 3.602 12 O -0.478 6.478 13 N -0.376 5.376 14 C -0.011 4.011 15 C -0.168 4.168 16 C -0.056 4.056 17 C -0.187 4.187 18 C -0.018 4.018 19 O -0.304 6.304 20 C -0.018 4.018 21 C -0.182 4.182 22 C -0.160 4.160 23 C 0.007 3.993 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.220 0.780 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.715 -17.625 3.003 21.939 hybrid contribution 0.708 1.280 0.069 1.465 sum 13.423 -16.344 3.072 21.372 Atomic orbital electron populations 1.69964 1.06093 1.27376 1.48843 1.24936 0.94896 0.99350 0.94750 0.86482 0.79420 0.82383 0.78649 1.20079 1.21055 1.20108 1.21175 0.93151 0.90481 1.53266 0.92115 1.18968 0.87818 0.81111 0.97556 1.45884 1.10772 1.04467 1.77283 1.16068 0.84795 0.81081 0.78231 1.90854 1.14463 1.83865 1.58641 1.47261 1.05026 1.05983 1.79334 1.21557 0.81252 1.00763 0.97556 1.22092 1.00501 0.94866 0.99327 1.20483 0.95469 0.94786 0.94867 1.22344 0.96320 1.01536 0.98482 1.22625 0.93102 0.98017 0.88028 1.87912 1.71936 1.56515 1.14015 1.22610 0.94213 0.97846 0.87103 1.22237 0.96051 1.01568 0.98337 1.21970 0.93919 1.00835 0.99307 1.21328 1.00602 0.80780 0.96548 0.92400 0.95703 0.95892 0.78019 0.90081 0.91756 0.90984 0.90890 0.90157 0.91019 0.89107 0.92875 0.89162 0.92899 0.91023 0.90804 0.90983 0.91303 0.89018 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 7.23 5.43 -5.20 -0.03 7.20 16 10 N -0.73 -16.00 5.46 -66.42 -0.36 -16.37 16 11 C 0.70 14.80 8.30 -86.91 -0.72 14.08 16 12 O -0.60 -15.25 15.78 5.29 0.08 -15.17 16 13 N -0.64 -9.90 2.97 -178.48 -0.53 -10.43 16 14 C 0.11 1.34 5.96 -3.71 -0.02 1.32 16 15 C -0.13 -1.28 4.34 -26.64 -0.12 -1.40 16 16 C -0.06 -0.51 0.51 -154.42 -0.08 -0.59 16 17 C -0.15 -1.27 4.16 -26.61 -0.11 -1.38 16 18 C 0.06 0.49 6.57 37.21 0.24 0.73 16 19 O -0.38 -3.82 10.76 -35.23 -0.38 -4.20 16 20 C 0.06 0.48 6.57 37.21 0.24 0.72 16 21 C -0.14 -1.18 4.92 -26.62 -0.13 -1.31 16 22 C -0.12 -1.28 4.91 -26.65 -0.13 -1.41 16 23 C 0.13 1.73 5.95 -3.70 -0.02 1.71 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.38 7.29 5.78 -40.82 -0.24 7.05 16 28 H 0.08 1.00 5.56 -51.93 -0.29 0.71 16 29 H 0.06 0.67 6.64 -51.93 -0.34 0.32 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.62 5.00 -51.92 -0.26 0.36 16 32 H 0.08 0.71 5.03 -51.93 -0.26 0.44 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.42 6.63 -51.93 -0.34 0.07 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.41 6.57 -51.93 -0.34 0.07 16 38 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.42 7.03 -51.93 -0.37 1.06 16 43 H 0.06 0.68 6.80 -51.93 -0.35 0.33 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -32.93 323.85 -8.44 -41.36 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.56 Total: 3.40 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.29 Total: 6.21 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.16 Total: -52.33 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.30 Total: -19.37 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.93 -8.44 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336387935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.532 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds