Wall clock time and date at job start Tue Mar 31 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48494 * 109.47240 * 240.00175 * 3 2 1 5 5 H 1.48501 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47070 * 119.99503 * 3 2 1 7 7 C 1.37874 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00276 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00172 * 179.72598 * 10 9 7 12 12 O 1.21585 * 119.99990 * 355.18338 * 11 10 9 13 13 N 1.34776 * 120.00390 * 175.18265 * 11 10 9 14 14 C 1.47154 * 120.98866 * 4.69775 * 13 11 10 15 15 C 1.52879 * 108.61124 * 230.54236 * 14 13 11 16 16 O 1.42969 * 109.30422 * 307.90767 * 15 14 13 17 17 C 1.42902 * 114.18775 * 62.36513 * 16 15 14 18 18 C 1.52951 * 109.56870 * 57.42549 * 17 16 15 19 19 C 1.52995 * 109.50767 * 60.40898 * 18 17 16 20 20 C 1.53010 * 109.46381 * 59.93985 * 19 18 17 21 21 C 1.53005 * 109.44985 * 299.94569 * 20 19 18 22 22 C 1.52947 * 109.58143 * 177.67006 * 17 16 15 23 23 C 1.47151 * 120.99250 * 184.97944 * 13 11 10 24 24 H 0.96997 * 120.00003 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47067 * 59.99348 * 9 7 2 26 26 H 1.09001 * 109.47373 * 300.00129 * 9 7 2 27 27 H 0.97001 * 120.00111 * 359.97438 * 10 9 7 28 28 H 1.09006 * 109.68071 * 350.31664 * 14 13 11 29 29 H 1.08996 * 109.68376 * 110.86653 * 14 13 11 30 30 H 1.09001 * 109.57837 * 187.89808 * 15 14 13 31 31 H 1.08993 * 109.36923 * 67.79318 * 15 14 13 32 32 H 1.09010 * 109.46118 * 180.42351 * 18 17 16 33 33 H 1.09005 * 109.46880 * 300.39364 * 18 17 16 34 34 H 1.08996 * 109.47373 * 299.94168 * 19 18 17 35 35 H 1.09000 * 109.47897 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.47538 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.47907 * 59.93948 * 20 19 18 38 38 H 1.09004 * 109.47076 * 300.04751 * 21 20 19 39 39 H 1.09000 * 109.46761 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.46085 * 59.59884 * 22 17 16 41 41 H 1.08998 * 109.46654 * 179.58173 * 22 17 16 42 42 H 1.09005 * 109.68250 * 249.20574 * 23 13 11 43 43 H 1.09000 * 109.68411 * 9.75750 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0061 12 8 0.5625 -5.1065 0.0996 13 7 2.6256 -5.9066 -0.0919 14 6 4.0774 -5.6669 -0.1029 15 6 4.6849 -6.4057 -1.2955 16 8 4.2674 -7.7728 -1.2671 17 6 2.8555 -7.9564 -1.3892 18 6 2.3655 -7.3130 -2.6874 19 6 3.0605 -7.9742 -3.8793 20 6 2.7340 -9.4690 -3.8950 21 6 3.2273 -10.1118 -2.5971 22 6 2.5325 -9.4513 -1.4047 23 6 2.1536 -7.2964 -0.1973 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 3.1569 -3.4353 0.0002 28 1 4.2724 -4.5985 -0.1964 29 1 4.5184 -6.0415 0.8209 30 1 5.7724 -6.3560 -1.2405 31 1 4.3447 -5.9403 -2.2205 32 1 1.2873 -7.4476 -2.7750 33 1 2.5987 -6.2483 -2.6757 34 1 4.1385 -7.8386 -3.7923 35 1 2.7106 -7.5156 -4.8042 36 1 3.2287 -9.9401 -4.7443 37 1 1.6559 -9.6046 -3.9808 38 1 4.3053 -9.9753 -2.5108 39 1 2.9952 -11.1768 -2.6081 40 1 2.8849 -9.9086 -0.4800 41 1 1.4547 -9.5892 -1.4903 42 1 2.3969 -7.8371 0.7174 43 1 1.0751 -7.3069 -0.3546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336418124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:06 Heat of formation + Delta-G solvation = -83.061381 kcal Electronic energy + Delta-G solvation = -23509.975496 eV Core-core repulsion = 20168.706475 eV Total energy + Delta-G solvation = -3341.269021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77941 -38.81657 -36.48548 -34.38149 -34.22031 -32.46123 -31.73644 -30.82059 -28.61902 -27.41406 -25.44691 -23.64531 -22.71499 -22.49377 -21.01757 -19.61562 -19.04666 -18.15103 -16.30762 -16.24225 -15.95708 -15.54021 -15.10227 -14.90127 -14.80558 -14.50814 -13.87834 -13.73532 -13.49474 -13.39055 -13.13718 -12.42113 -12.33666 -12.24653 -12.05219 -11.82482 -11.70815 -11.58161 -11.15271 -11.02754 -10.97829 -10.88108 -10.65071 -10.50101 -10.29658 -10.11104 -9.77512 -9.41522 -9.35312 -8.73774 -8.32031 -7.73500 -6.16006 -4.22975 3.06026 3.25047 3.30112 3.31739 3.65021 3.85980 4.30050 4.50704 4.60542 4.64388 4.69169 4.89572 4.98687 5.06405 5.10176 5.19776 5.20470 5.30153 5.35942 5.41487 5.51154 5.54624 5.64893 5.70297 5.75562 5.85359 5.92190 5.94665 6.03224 6.07285 6.11748 6.25539 6.33678 6.66898 7.09158 7.16874 7.48901 7.51632 7.56010 7.83664 8.00829 8.73534 8.87639 9.29286 9.45976 10.94186 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030363 B = 0.003791 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.950262 B = 7385.060172 C = 7466.700472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.699 3.301 12 O -0.596 6.596 13 N -0.639 5.639 14 C 0.078 3.922 15 C 0.045 3.955 16 O -0.367 6.367 17 C 0.108 3.892 18 C -0.141 4.141 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.102 4.102 23 C 0.111 3.889 24 H 0.266 0.734 25 H 0.023 0.977 26 H 0.025 0.975 27 H 0.385 0.615 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.025 -18.132 -5.243 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.400 3.600 12 O -0.475 6.475 13 N -0.379 5.379 14 C -0.046 4.046 15 C -0.033 4.033 16 O -0.286 6.286 17 C 0.068 3.932 18 C -0.179 4.179 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.013 4.013 24 H 0.076 0.924 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.220 0.780 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.050 -18.239 -5.160 21.005 hybrid contribution 0.764 1.406 0.053 1.601 sum 9.814 -16.833 -5.107 20.144 Atomic orbital electron populations 1.69969 1.06092 1.27399 1.48778 1.24937 0.94909 0.99370 0.94719 0.86473 0.79414 0.82336 0.78663 1.20088 1.21050 1.20070 1.21168 0.93165 0.90450 1.53357 0.92088 1.18982 0.87784 0.81053 0.97596 1.45871 1.10812 1.04394 1.77212 1.16026 0.84721 0.80986 0.78257 1.90860 1.14324 1.83803 1.58534 1.47268 1.05068 1.05835 1.79744 1.22160 0.81640 1.01378 0.99415 1.22890 0.99661 0.83141 0.97583 1.87925 1.21943 1.24632 1.94056 1.21821 0.81650 0.95710 0.94024 1.22051 1.01039 1.00534 0.94268 1.21451 1.00902 0.95304 0.97528 1.21538 1.00929 0.95668 0.97488 1.21437 1.01083 0.98622 0.93964 1.21473 1.00918 0.92178 0.99423 1.22015 1.00950 0.80992 0.97372 0.92384 0.95853 0.95658 0.78043 0.89286 0.91080 0.88011 0.92237 0.90885 0.91160 0.91642 0.92221 0.92244 0.92160 0.91151 0.92191 0.91069 0.90399 0.91643 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 7.21 5.43 -5.20 -0.03 7.18 16 10 N -0.73 -15.95 5.46 -66.42 -0.36 -16.31 16 11 C 0.70 14.88 8.31 -86.92 -0.72 14.16 16 12 O -0.60 -15.13 15.85 5.29 0.08 -15.04 16 13 N -0.64 -10.33 2.55 -178.28 -0.45 -10.78 16 14 C 0.08 0.98 6.60 -3.75 -0.02 0.96 16 15 C 0.04 0.49 6.58 37.10 0.24 0.73 16 16 O -0.37 -4.34 8.93 -35.23 -0.31 -4.66 16 17 C 0.11 1.28 0.68 -90.54 -0.06 1.22 16 18 C -0.14 -1.75 4.19 -26.76 -0.11 -1.86 16 19 C -0.11 -1.18 5.78 -26.73 -0.15 -1.34 16 20 C -0.12 -1.06 5.92 -26.72 -0.16 -1.22 16 21 C -0.11 -1.00 5.78 -26.73 -0.15 -1.16 16 22 C -0.10 -0.99 4.94 -26.76 -0.13 -1.12 16 23 C 0.11 1.57 5.28 -3.55 -0.02 1.55 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.38 7.26 5.83 -40.82 -0.24 7.02 16 28 H 0.09 1.08 5.67 -51.93 -0.29 0.79 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.69 6.26 -51.93 -0.32 0.36 16 32 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.07 1.01 6.11 -51.93 -0.32 0.69 16 34 H 0.06 0.69 7.70 -51.93 -0.40 0.29 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.68 7.70 -51.93 -0.40 0.28 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.56 7.11 -51.93 -0.37 1.20 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -32.36 331.15 -9.03 -41.40 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.95 Total: 4.38 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.74 Total: 5.67 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.08 Total: -52.55 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.23 Total: -19.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.36 -9.03 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336418124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.666 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds