Wall clock time and date at job start Tue Mar 31 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47367 * 269.99702 * 3 2 1 5 5 H 1.48500 * 109.47160 * 29.99836 * 3 2 1 6 6 H 1.48506 * 109.47256 * 149.99474 * 3 2 1 7 7 C 1.37874 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99957 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00363 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47252 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47325 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00319 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00234 * 354.80946 * 12 11 10 14 14 N 1.34784 * 120.00036 * 174.80654 * 12 11 10 15 15 C 1.49815 * 120.60279 * 184.59347 * 14 12 11 16 16 C 1.47142 * 107.35118 * 111.10847 * 15 14 12 17 17 O 1.42204 * 114.15598 * 57.40408 * 16 15 14 18 18 C 1.39793 * 108.73047 * 267.75292 * 17 16 15 19 19 C 1.54629 * 110.11748 * 99.36374 * 18 17 16 20 20 C 1.52509 * 114.05644 * 192.02529 * 19 18 17 21 21 C 1.54010 * 86.73285 * 219.77644 * 20 19 18 22 22 C 1.52614 * 113.84491 * 92.68428 * 19 18 17 23 23 C 1.43708 * 120.60042 * 4.31821 * 14 12 11 24 24 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46787 * 60.00083 * 9 7 2 26 26 H 1.08994 * 109.46634 * 300.00362 * 9 7 2 27 27 H 1.09000 * 109.47510 * 300.00156 * 10 9 7 28 28 H 1.09003 * 109.47287 * 60.00229 * 10 9 7 29 29 H 0.97003 * 119.99236 * 0.02562 * 11 10 9 30 30 H 1.08998 * 109.87620 * 230.57262 * 15 14 12 31 31 H 1.09006 * 109.88075 * 351.64072 * 15 14 12 32 32 H 1.09007 * 108.54428 * 178.61576 * 16 15 14 33 33 H 1.09002 * 108.54444 * 296.34335 * 16 15 14 34 34 H 1.08994 * 109.36256 * 219.55730 * 18 17 16 35 35 H 1.08998 * 109.36410 * 339.16459 * 18 17 16 36 36 H 1.08998 * 113.67284 * 334.22993 * 20 19 18 37 37 H 1.08997 * 113.67651 * 105.31785 * 20 19 18 38 38 H 1.09000 * 113.57505 * 269.94783 * 21 20 19 39 39 H 1.09003 * 113.65296 * 139.16140 * 21 20 19 40 40 H 1.09000 * 113.67017 * 254.87401 * 22 19 18 41 41 H 1.09000 * 113.67689 * 25.97030 * 22 19 18 42 42 H 1.09003 * 108.32398 * 29.11344 * 23 14 12 43 43 H 1.08997 * 108.32147 * 146.10242 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4865 -2.6367 0.0009 12 6 6.1604 -3.8038 0.0003 13 8 5.5562 -4.8547 0.0950 14 7 7.5040 -3.8062 -0.1054 15 6 8.2586 -5.0962 -0.2106 16 6 8.8121 -5.1711 -1.5718 17 8 9.6526 -4.0779 -1.9192 18 6 8.8764 -3.0940 -2.5387 19 6 8.5178 -1.9829 -1.5249 20 6 7.4429 -1.0181 -2.0144 21 6 8.2717 0.1006 -1.3559 22 6 9.4996 -0.8146 -1.5170 23 6 8.2385 -2.5711 -0.1252 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.6578 -3.1507 0.8907 28 1 3.6586 -3.1502 -0.8893 29 1 5.9715 -1.7966 0.0014 30 1 9.0673 -5.1131 0.5200 31 1 7.5843 -5.9351 -0.0378 32 1 9.3870 -6.0928 -1.6621 33 1 7.9850 -5.2087 -2.2808 34 1 9.4366 -2.6603 -3.3670 35 1 7.9602 -3.5440 -2.9209 36 1 7.3868 -0.9397 -3.1001 37 1 6.4699 -1.1738 -1.5486 38 1 8.0017 0.2892 -0.3169 39 1 8.3264 1.0123 -1.9508 40 1 10.1659 -0.8088 -0.6544 41 1 10.0259 -0.6787 -2.4618 42 1 7.6792 -1.8306 0.4468 43 1 9.1939 -2.7325 0.3739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336560054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:03 Heat of formation + Delta-G solvation = -40.774634 kcal Electronic energy + Delta-G solvation = -23703.890740 eV Core-core repulsion = 20364.455409 eV Total energy + Delta-G solvation = -3339.435330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18370 -39.10200 -38.17990 -35.34787 -34.83707 -32.82606 -31.25497 -29.89952 -27.98374 -26.65432 -25.96260 -24.85814 -22.78514 -22.39134 -20.85581 -20.01290 -18.61148 -18.17407 -17.02594 -16.85247 -16.37547 -15.87725 -15.54737 -15.15359 -14.71481 -14.31630 -14.11835 -14.00166 -13.77938 -13.58438 -13.23259 -12.76181 -12.57553 -12.50025 -12.09679 -12.02734 -11.48418 -11.35849 -11.22714 -11.19392 -11.00051 -10.66531 -10.44096 -10.39773 -10.22449 -9.95918 -9.72461 -9.61024 -9.32955 -8.82385 -8.62630 -8.32633 -6.11464 -4.11424 2.71221 3.24161 3.32001 3.33101 3.42225 3.72405 4.15354 4.30509 4.37075 4.44315 4.51784 4.70232 4.84844 4.92380 5.05277 5.11347 5.17422 5.21450 5.24264 5.34389 5.49716 5.51585 5.57190 5.63210 5.64563 5.74966 5.80135 5.87805 6.05946 6.13032 6.23783 6.24613 6.43724 6.57116 6.80119 6.91654 7.02886 7.23034 7.25854 7.66676 8.21096 8.44711 8.84159 8.93368 9.48737 11.01614 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.005055 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.024745 B = 5537.241664 C = 6577.637885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.146 3.854 11 N -0.742 5.742 12 C 0.703 3.297 13 O -0.592 6.592 14 N -0.631 5.631 15 C 0.105 3.895 16 C 0.032 3.968 17 O -0.354 6.354 18 C 0.070 3.930 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.119 4.119 23 C 0.139 3.861 24 H 0.265 0.735 25 H 0.021 0.979 26 H 0.016 0.984 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.391 0.609 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.739 -3.491 -3.721 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.023 3.977 11 N -0.398 5.398 12 C 0.405 3.595 13 O -0.470 6.470 14 N -0.369 5.369 15 C -0.017 4.017 16 C -0.046 4.046 17 O -0.271 6.271 18 C -0.008 4.008 19 C -0.131 4.131 20 C -0.176 4.176 21 C -0.181 4.181 22 C -0.157 4.157 23 C 0.014 3.986 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.276 -4.149 -3.600 22.943 hybrid contribution 0.295 1.467 -0.094 1.499 sum 22.570 -2.681 -3.695 23.027 Atomic orbital electron populations 1.69903 1.06274 1.27024 1.50456 1.24984 0.94741 0.99076 0.94389 0.86776 0.80303 0.83645 0.78515 1.20198 1.21260 1.19097 1.20905 0.88564 0.94905 1.51582 0.90573 1.19790 0.98002 0.91379 0.96694 1.21402 0.74824 0.99894 1.01542 1.45849 1.08942 1.06400 1.78621 1.15982 0.80882 0.84831 0.77822 1.90885 1.67248 1.30821 1.58078 1.47243 1.04662 1.06491 1.78498 1.21568 0.95802 0.86927 0.97432 1.21991 0.94842 0.90677 0.97053 1.87669 1.32338 1.28643 1.78470 1.22596 0.95125 0.89238 0.93834 1.23138 0.97942 0.94989 0.96989 1.22931 0.98000 0.95393 1.01304 1.22957 0.96376 0.97421 1.01363 1.22741 0.95993 0.94554 1.02369 1.20661 0.97461 0.86080 0.94442 0.92557 0.96125 0.96549 0.92019 0.92197 0.77212 0.90392 0.87343 0.89226 0.92200 0.90385 0.92368 0.89727 0.90426 0.90046 0.91174 0.91190 0.89811 0.91419 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 10 C 0.15 3.04 5.62 -4.04 -0.02 3.02 16 11 N -0.74 -12.83 4.86 -65.23 -0.32 -13.15 16 12 C 0.70 12.19 8.28 -86.92 -0.72 11.47 16 13 O -0.59 -12.40 15.82 5.29 0.08 -12.31 16 14 N -0.63 -8.34 2.61 -181.26 -0.47 -8.81 16 15 C 0.10 1.14 6.32 -5.01 -0.03 1.11 16 16 C 0.03 0.31 6.01 34.34 0.21 0.52 16 17 O -0.35 -3.76 10.30 -32.37 -0.33 -4.10 16 18 C 0.07 0.71 5.63 38.01 0.21 0.92 16 19 C -0.13 -1.29 1.18 -153.40 -0.18 -1.47 16 20 C -0.14 -1.50 7.16 -26.46 -0.19 -1.69 16 21 C -0.14 -1.34 7.75 -25.71 -0.20 -1.54 16 22 C -0.12 -1.01 7.26 -26.41 -0.19 -1.20 16 23 C 0.14 1.54 4.07 -4.80 -0.02 1.52 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 26 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.39 5.96 4.22 -40.82 -0.17 5.79 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 1.29 7.10 -51.93 -0.37 0.92 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 34 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 35 H 0.06 0.65 6.70 -51.93 -0.35 0.30 16 36 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.08 1.01 5.38 -51.93 -0.28 0.73 16 38 H 0.08 0.76 7.82 -51.93 -0.41 0.35 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 42 H 0.07 0.76 5.65 -51.93 -0.29 0.47 16 43 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -32.24 329.64 -8.41 -40.64 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.76 Total: 3.92 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.68 Total: -0.95 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.02 Total: -48.48 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.25 Total: -16.41 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.24 -8.41 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336560054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.130 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds