Wall clock time and date at job start Tue Mar 31 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48495 * 109.47300 * 269.99933 * 3 2 1 5 5 H 1.48497 * 109.46973 * 29.99974 * 3 2 1 6 6 H 1.48499 * 109.47110 * 149.99601 * 3 2 1 7 7 C 1.37879 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00220 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99919 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47264 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47300 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47024 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00058 * 180.02562 * 12 11 10 14 14 O 1.21357 * 119.99864 * 359.97438 * 13 12 11 15 15 C 1.49446 * 120.00293 * 179.97438 * 13 12 11 16 16 O 1.21352 * 119.99974 * 359.97438 * 15 13 12 17 17 N 1.34777 * 120.00171 * 179.97438 * 15 13 12 18 18 C 1.46506 * 120.00033 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47289 * 275.00400 * 18 17 15 20 20 C 1.52996 * 109.47131 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47518 * 59.99828 * 20 19 18 22 22 C 1.53005 * 109.46632 * 300.00318 * 21 20 19 23 23 C 1.52996 * 109.47571 * 60.00168 * 22 21 20 24 24 H 0.96998 * 120.00358 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47285 * 59.99915 * 9 7 2 26 26 H 1.08997 * 109.47047 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46914 * 59.99841 * 10 9 7 28 28 H 1.09003 * 109.46589 * 300.00115 * 10 9 7 29 29 H 1.08993 * 109.47089 * 59.99963 * 11 10 9 30 30 H 1.08997 * 109.46928 * 300.00157 * 11 10 9 31 31 H 0.96997 * 119.99996 * 359.97438 * 12 11 10 32 32 H 0.97000 * 120.00155 * 0.02562 * 17 15 13 33 33 H 1.09001 * 109.47060 * 35.00669 * 18 17 15 34 34 H 1.09001 * 109.46832 * 299.99854 * 19 18 17 35 35 H 1.08996 * 109.46952 * 59.99873 * 19 18 17 36 36 H 1.09001 * 109.46997 * 299.99574 * 20 19 18 37 37 H 1.09004 * 109.47552 * 179.97438 * 20 19 18 38 38 H 1.08992 * 109.47399 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47194 * 59.99866 * 21 20 19 40 40 H 1.09001 * 109.47420 * 299.99415 * 22 21 20 41 41 H 1.09004 * 109.46832 * 179.97438 * 22 21 20 42 42 H 1.08992 * 109.47346 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47364 * 59.99212 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6366 0.0035 12 7 6.0398 -4.0178 0.0040 13 6 7.3648 -4.2641 0.0056 14 8 8.1534 -3.3417 0.0062 15 6 7.8630 -5.6731 0.0067 16 8 7.0745 -6.5954 0.0066 17 7 9.1881 -5.9193 0.0078 18 6 9.6765 -7.3006 0.0094 19 6 9.7269 -7.8220 1.4469 20 6 10.2375 -9.2643 1.4487 21 6 11.6406 -9.3094 0.8402 22 6 11.5901 -8.7879 -0.5973 23 6 11.0796 -7.3456 -0.5991 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 3.6585 -3.1510 -0.8875 28 1 3.6578 -3.1498 0.8925 29 1 5.9141 -2.1223 0.8935 30 1 5.9155 -2.1232 -0.8864 31 1 5.4095 -4.7550 0.0039 32 1 9.8185 -5.1821 0.0083 33 1 9.0043 -7.9243 -0.5799 34 1 10.3991 -7.1983 2.0362 35 1 8.7274 -7.7895 1.8805 36 1 9.5657 -9.8883 0.8592 37 1 10.2739 -9.6357 2.4728 38 1 12.0042 -10.3369 0.8411 39 1 12.3125 -8.6854 1.4297 40 1 10.9183 -9.4118 -1.1868 41 1 12.5898 -8.8196 -1.0306 42 1 11.0431 -6.9743 -1.6231 43 1 11.7514 -6.7217 -0.0096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339461489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:05 Heat of formation + Delta-G solvation = -108.293461 kcal Electronic energy + Delta-G solvation = -21523.088227 eV Core-core repulsion = 18180.725061 eV Total energy + Delta-G solvation = -3342.363166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81896 -39.23715 -38.00688 -35.84328 -34.51817 -33.30169 -31.48392 -31.21882 -29.94190 -27.62951 -24.96846 -23.14340 -22.89895 -21.84443 -20.76096 -20.57328 -19.84547 -18.39417 -17.07651 -16.71702 -16.19530 -16.04543 -15.44931 -15.06747 -14.94847 -14.52368 -14.41490 -14.17842 -13.81365 -13.61470 -13.26112 -12.89270 -12.72852 -12.64038 -12.08942 -11.97544 -11.85388 -11.64752 -11.58496 -11.12959 -11.06774 -10.92524 -10.91293 -10.68327 -10.17397 -9.98037 -9.78757 -9.51121 -9.44339 -9.24344 -9.07170 -8.56645 -6.06924 -4.05900 1.37520 2.29200 3.17703 3.30203 3.37863 3.41362 3.58732 4.20570 4.29193 4.41785 4.43247 4.52403 4.68811 4.78678 4.98315 5.02107 5.04191 5.17317 5.26729 5.32856 5.43564 5.56406 5.56617 5.61644 5.62452 5.67220 5.78399 5.87514 5.92723 5.95161 6.08455 6.15827 6.38474 6.53768 6.73533 6.88770 7.19680 7.33028 7.35194 7.68870 7.74413 7.98854 8.49472 8.97170 9.54846 11.06278 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.050207 B = 0.002382 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.558543 B =11754.292115 C =12055.347735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.111 3.889 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.528 6.528 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.701 5.701 18 C 0.143 3.857 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.128 4.128 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.413 0.587 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.238 -17.815 0.598 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.011 4.011 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.405 6.405 15 C 0.290 3.710 16 O -0.394 6.394 17 N -0.354 5.354 18 C 0.039 3.961 19 C -0.170 4.170 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.166 4.166 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.249 0.751 32 H 0.248 0.752 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 25.047 -17.679 0.594 30.663 hybrid contribution 0.277 0.980 0.010 1.019 sum 25.324 -16.699 0.604 30.340 Atomic orbital electron populations 1.69907 1.06313 1.26967 1.50894 1.25035 0.94763 0.99244 0.94485 0.86768 0.80377 0.83531 0.78566 1.20248 1.21365 1.18916 1.21089 0.89248 0.94570 1.51158 0.90933 1.19505 0.97374 0.91254 0.96705 1.21744 0.90127 1.01268 1.02182 1.21844 0.96671 0.80114 1.02459 1.46018 1.06110 1.11088 1.71093 1.20056 0.83956 0.89085 0.78894 1.90755 1.55284 1.45524 1.48921 1.20315 0.83408 0.89823 0.77455 1.90764 1.55210 1.45716 1.47722 1.45869 1.06639 1.09586 1.73296 1.21127 0.95730 0.81962 0.97262 1.21945 1.02204 0.96638 0.96221 1.21495 0.96532 0.96181 1.01272 1.21589 0.97200 1.01200 0.96030 1.21482 1.01408 0.95236 0.97219 1.21826 0.95076 0.98152 1.01521 0.92677 0.96248 0.96674 0.91809 0.91793 0.91116 0.91124 0.75141 0.75207 0.89000 0.91550 0.91170 0.91593 0.91564 0.91763 0.91829 0.91539 0.91371 0.91019 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.11 1.79 5.67 -4.04 -0.02 1.77 16 12 N -0.69 -9.95 5.55 -60.74 -0.34 -10.28 16 13 C 0.50 7.19 7.89 -11.59 -0.09 7.10 16 14 O -0.53 -8.57 16.48 5.49 0.09 -8.48 16 15 C 0.51 6.48 7.85 -11.59 -0.09 6.39 16 16 O -0.52 -7.57 16.14 5.49 0.09 -7.49 16 17 N -0.70 -6.82 5.07 -54.23 -0.27 -7.09 16 18 C 0.14 1.16 2.46 -67.93 -0.17 0.99 16 19 C -0.13 -1.02 5.49 -26.73 -0.15 -1.17 16 20 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 21 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 22 C -0.12 -0.58 5.92 -26.73 -0.16 -0.74 16 23 C -0.13 -0.75 5.39 -26.73 -0.14 -0.89 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.41 5.47 7.94 -40.82 -0.32 5.15 16 32 H 0.41 3.55 8.07 -40.82 -0.33 3.22 16 33 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -32.08 351.03 -8.18 -40.26 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.32 Total: 1.84 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.82 Total: -4.04 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.16 Total: -44.31 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.18 Total: -15.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.08 -8.18 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339461489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.038 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds