Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48495 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46830 * 300.00008 * 3 2 1 6 6 H 1.48503 * 109.47108 * 59.99616 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 N 1.46509 * 109.47002 * 179.97438 * 14 12 11 16 16 C 1.44869 * 112.61593 * 89.99549 * 15 14 12 17 17 C 1.53185 * 111.78834 * 180.20120 * 16 15 14 18 18 C 1.53047 * 109.10233 * 279.36739 * 17 16 15 19 19 C 1.51482 * 111.50703 * 58.25797 * 18 17 16 20 20 C 1.52460 * 107.05329 * 66.74347 * 19 18 17 21 21 C 1.53072 * 110.86429 * 282.13241 * 20 19 18 22 22 C 1.32034 * 112.61205 * 269.76529 * 15 14 12 23 23 O 1.21286 * 118.29480 * 351.58452 * 22 15 14 24 24 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.09003 * 109.47112 * 299.99065 * 14 12 11 31 31 H 1.08993 * 109.47916 * 59.99687 * 14 12 11 32 32 H 1.08999 * 109.01630 * 300.80122 * 16 15 14 33 33 H 1.09004 * 109.01403 * 59.60890 * 16 15 14 34 34 H 1.09000 * 109.52891 * 39.25579 * 17 16 15 35 35 H 1.09003 * 109.53223 * 159.47747 * 17 16 15 36 36 H 1.09002 * 109.06754 * 178.77540 * 18 17 16 37 37 H 1.08997 * 109.07552 * 297.79473 * 18 17 16 38 38 H 1.09004 * 109.93865 * 186.13309 * 19 18 17 39 39 H 1.09000 * 109.93475 * 307.26995 * 19 18 17 40 40 H 1.09003 * 109.20150 * 42.48989 * 20 19 18 41 41 H 1.09003 * 109.20025 * 161.77941 * 20 19 18 42 42 H 1.08998 * 109.61998 * 83.93019 * 21 20 19 43 43 H 1.09002 * 109.61923 * 204.48366 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.3998 -6.0978 0.0059 14 6 1.4335 -7.4030 0.0111 15 7 2.3856 -8.5165 0.0159 16 6 2.7477 -8.9341 1.3550 17 6 3.7468 -10.0952 1.3379 18 6 2.9900 -11.4038 1.0991 19 6 2.2145 -11.3674 -0.2016 20 6 3.2376 -11.3185 -1.3309 21 6 3.8120 -9.9081 -1.4855 22 6 2.7118 -8.9109 -1.2012 23 8 2.1000 -8.4457 -2.1395 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 0.8066 -7.4568 0.9012 31 1 0.8072 -7.4649 -0.8788 32 1 3.1927 -8.0902 1.8821 33 1 1.8480 -9.2475 1.8847 34 1 4.4705 -9.9413 0.5375 35 1 4.2656 -10.1436 2.2954 36 1 3.7038 -12.2269 1.0653 37 1 2.2952 -11.5688 1.9225 38 1 1.6014 -12.2639 -0.2941 39 1 1.5821 -10.4802 -0.2326 40 1 4.0480 -12.0135 -1.1108 41 1 2.7566 -11.6138 -2.2635 42 1 4.6291 -9.7662 -0.7781 43 1 4.1775 -9.7712 -2.5032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342641016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -68.500774 kcal Electronic energy + Delta-G solvation = -22695.693613 eV Core-core repulsion = 19355.055987 eV Total energy + Delta-G solvation = -3340.637626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26910 -38.89271 -37.27702 -35.48081 -34.67855 -32.83499 -32.01549 -30.28065 -29.32298 -27.10933 -26.12322 -24.45706 -22.38189 -21.49444 -20.87292 -20.06763 -18.87834 -17.41969 -16.77560 -16.67126 -16.42436 -15.99344 -15.38220 -14.90484 -14.65426 -14.44302 -14.23357 -13.96137 -13.65030 -13.32014 -12.92830 -12.87016 -12.76756 -12.34832 -12.26093 -11.94781 -11.65423 -11.55261 -11.18753 -11.09782 -11.03642 -11.03480 -10.62199 -10.32035 -10.24032 -9.89178 -9.72194 -9.56191 -9.26387 -8.64444 -8.52988 -8.33846 -6.08612 -4.11331 2.57919 2.86627 3.02150 3.28892 3.36366 3.41509 3.82352 4.33187 4.38877 4.42684 4.43956 4.56849 4.71371 4.88506 4.91977 5.10669 5.16370 5.20901 5.28461 5.31686 5.33967 5.46862 5.51426 5.58008 5.64889 5.66568 5.76474 5.82283 5.92728 6.01484 6.14855 6.35618 6.37282 6.75335 6.94117 7.52619 7.53075 7.63250 7.89682 8.00867 8.11351 8.29005 8.66783 8.94888 9.53489 11.03038 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041584 B = 0.002940 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.181507 B = 9521.603069 C = 9615.484180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.720 5.720 12 C 0.494 3.506 13 O -0.547 6.547 14 C 0.055 3.945 15 N -0.580 5.580 16 C 0.127 3.873 17 C -0.152 4.152 18 C -0.119 4.119 19 C -0.137 4.137 20 C -0.113 4.113 21 C -0.143 4.143 22 C 0.537 3.463 23 O -0.552 6.552 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.398 0.602 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -25.248 3.447 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.371 5.371 12 C 0.278 3.722 13 O -0.425 6.425 14 C -0.072 4.072 15 N -0.311 5.311 16 C 0.005 3.995 17 C -0.189 4.189 18 C -0.156 4.156 19 C -0.175 4.175 20 C -0.151 4.151 21 C -0.183 4.183 22 C 0.326 3.674 23 O -0.430 6.430 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.231 0.769 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.968 -24.974 2.967 25.461 hybrid contribution -0.060 1.087 0.140 1.097 sum 3.908 -23.887 3.107 24.403 Atomic orbital electron populations 1.69964 1.06080 1.26756 1.50499 1.25000 0.94896 0.99415 0.95009 0.86460 0.80166 0.83349 0.77615 1.19597 1.20913 1.20937 1.21093 0.93266 0.90407 1.51175 0.92243 1.19330 0.94205 0.91119 0.97861 1.21701 0.96032 0.81536 1.00638 1.46285 1.10537 1.06487 1.73766 1.20922 0.88627 0.85869 0.76755 1.90653 1.13929 1.87702 1.50245 1.21695 0.93582 0.85850 1.06099 1.46564 1.45487 1.33192 1.05875 1.21288 0.98943 0.97918 0.81379 1.22301 0.98724 0.93861 1.04006 1.21400 0.99153 0.97359 0.97722 1.21576 0.98096 1.03087 0.94725 1.21438 0.99123 0.95037 0.99545 1.22302 0.97265 0.94239 1.04471 1.19695 0.84336 0.81851 0.81508 1.90730 1.53060 1.57518 1.41703 0.92899 0.95884 0.95935 0.92686 0.92695 0.76863 0.87952 0.85931 0.90848 0.91152 0.89239 0.90037 0.91734 0.92028 0.91320 0.90572 0.90886 0.91494 0.88510 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.70 5.61 -4.04 -0.02 2.68 16 11 N -0.72 -12.91 5.56 -60.29 -0.33 -13.25 16 12 C 0.49 8.62 7.80 -10.99 -0.09 8.53 16 13 O -0.55 -11.49 16.36 5.55 0.09 -11.39 16 14 C 0.06 0.72 5.37 -5.19 -0.03 0.69 16 15 N -0.58 -7.03 1.50 -176.79 -0.27 -7.30 16 16 C 0.13 1.15 5.19 -4.82 -0.03 1.12 16 17 C -0.15 -1.07 5.63 -26.61 -0.15 -1.22 16 18 C -0.12 -0.72 5.21 -27.47 -0.14 -0.86 16 19 C -0.14 -1.03 5.64 -27.77 -0.16 -1.18 16 20 C -0.11 -0.88 5.61 -26.97 -0.15 -1.03 16 21 C -0.14 -1.46 5.54 -27.61 -0.15 -1.61 16 22 C 0.54 7.41 5.23 -11.95 -0.06 7.34 16 23 O -0.55 -9.76 15.59 5.55 0.09 -9.68 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.40 6.11 8.47 -40.82 -0.35 5.76 16 30 H 0.10 0.96 7.79 -51.93 -0.40 0.56 16 31 H 0.12 1.67 6.58 -51.93 -0.34 1.33 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.50 7.88 -51.93 -0.41 0.09 16 34 H 0.09 0.70 4.13 -51.93 -0.21 0.49 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.33 7.84 -51.93 -0.41 -0.07 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.72 4.91 -51.93 -0.25 0.46 16 40 H 0.07 0.43 7.72 -51.93 -0.40 0.03 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.87 5.09 -51.93 -0.26 0.61 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -34.67 337.52 -7.96 -42.63 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.81 Total: 1.73 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.53 Total: 1.22 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.14 Total: -46.16 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.18 Total: -21.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.67 -7.96 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342641016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.872 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds