Wall clock time and date at job start Tue Mar 31 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48502 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 299.99461 * 3 2 1 6 6 H 1.48496 * 109.47476 * 59.99834 * 3 2 1 7 7 C 1.37878 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 17 17 C 1.52998 * 109.46708 * 299.72691 * 15 13 12 18 18 C 1.53006 * 109.47002 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.46924 * 59.99949 * 18 17 15 20 20 C 1.53001 * 109.47149 * 300.00180 * 19 18 17 21 21 H 1.09005 * 109.46947 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.47067 * 299.99602 * 20 19 18 23 23 N 1.34771 * 120.00369 * 300.00282 * 22 20 19 24 24 O 1.21287 * 119.99664 * 120.00020 * 22 20 19 25 25 C 1.52996 * 109.47350 * 60.00080 * 20 19 18 26 26 H 0.97005 * 119.99568 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 28 28 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 29 29 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 30 30 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 31 31 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 32 32 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 33 33 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 34 34 H 1.09002 * 109.47539 * 299.99802 * 17 15 13 35 35 H 1.09005 * 109.47120 * 60.00102 * 17 15 13 36 36 H 1.08996 * 109.46952 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.47088 * 300.00416 * 18 17 15 38 38 H 1.09006 * 109.47297 * 60.00173 * 19 18 17 39 39 H 1.09002 * 109.47205 * 180.02562 * 19 18 17 40 40 H 0.97000 * 120.00059 * 0.02562 * 23 22 20 41 41 H 0.97002 * 120.00253 * 179.97438 * 23 22 20 42 42 H 1.09000 * 109.47441 * 180.02562 * 25 20 19 43 43 H 1.09002 * 109.47087 * 59.99590 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0046 12 7 2.4320 -6.1007 0.0049 13 6 1.9827 -7.3713 0.0070 14 8 0.7903 -7.5929 0.0135 15 6 2.9619 -8.5169 0.0080 16 1 3.5924 -8.4551 0.8950 17 6 3.8361 -8.4414 -1.2454 18 6 4.8308 -9.6041 -1.2441 19 6 4.0662 -10.9293 -1.2346 20 6 3.1919 -11.0047 0.0188 21 1 2.6468 -11.9486 0.0253 22 6 4.0635 -10.9189 1.2451 23 7 5.0193 -11.8447 1.4587 24 8 3.9048 -10.0165 2.0399 25 6 2.1973 -9.8421 0.0175 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5575 -0.8880 28 1 0.6245 -2.5563 0.8920 29 1 2.8717 -3.6036 0.8927 30 1 2.8717 -3.6053 -0.8872 31 1 0.8531 -5.0459 -0.8852 32 1 0.8536 -5.0438 0.8947 33 1 3.3857 -5.9234 0.0045 34 1 3.2057 -8.5031 -2.1324 35 1 4.3812 -7.4975 -1.2519 36 1 5.4533 -9.5506 -2.1372 37 1 5.4612 -9.5420 -0.3571 38 1 3.4357 -10.9915 -2.1216 39 1 4.7747 -11.7576 -1.2332 40 1 5.1465 -12.5661 0.8229 41 1 5.5806 -11.7892 2.2479 42 1 1.5748 -9.8955 0.9107 43 1 1.5669 -9.9042 -0.8695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345594045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:08 Heat of formation + Delta-G solvation = -118.037520 kcal Electronic energy + Delta-G solvation = -22220.473270 eV Core-core repulsion = 18877.687569 eV Total energy + Delta-G solvation = -3342.785701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95789 -39.25338 -37.02041 -35.29381 -34.16365 -33.26661 -31.71895 -31.08309 -30.63110 -26.72857 -24.33047 -23.87328 -22.47534 -21.82542 -20.59743 -19.80284 -19.53944 -17.57167 -17.05129 -16.63696 -16.32511 -15.82764 -15.30974 -15.06984 -14.86299 -14.43204 -14.36262 -14.20950 -13.76287 -13.37288 -12.80604 -12.60621 -12.43578 -12.22835 -12.22757 -11.77018 -11.61776 -11.39431 -11.18116 -10.89130 -10.84003 -10.66539 -10.54819 -10.41806 -10.04977 -9.87498 -9.81356 -9.63446 -9.22138 -9.03959 -8.63179 -8.34458 -5.98923 -4.01741 2.33955 2.96919 3.19287 3.32012 3.39237 3.42891 3.54197 4.32462 4.37260 4.38651 4.47122 4.67473 4.91085 4.95601 5.05261 5.07722 5.20619 5.26783 5.36845 5.51583 5.59920 5.67678 5.74320 5.82881 5.85598 5.87911 5.92253 6.16450 6.21495 6.24309 6.45638 6.61384 6.67279 6.92730 6.97121 7.07361 7.67777 7.80781 7.86733 7.96237 8.00502 8.41566 8.56907 9.05289 9.62273 11.12483 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034787 B = 0.002710 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.702683 B =10330.725311 C =10477.953999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.727 5.727 13 C 0.515 3.485 14 O -0.549 6.549 15 C -0.119 4.119 16 H 0.121 0.879 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.111 4.111 21 H 0.101 0.899 22 C 0.521 3.479 23 N -0.858 5.858 24 O -0.533 6.533 25 C -0.078 4.078 26 H 0.260 0.740 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.400 0.600 41 H 0.400 0.600 42 H 0.076 0.924 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 -27.571 -2.475 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.377 5.377 13 C 0.301 3.699 14 O -0.427 6.427 15 C -0.140 4.140 16 H 0.139 0.861 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.149 4.149 20 C -0.132 4.132 21 H 0.119 0.881 22 C 0.307 3.693 23 N -0.422 5.422 24 O -0.409 6.409 25 C -0.116 4.116 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.228 0.772 41 H 0.230 0.770 42 H 0.095 0.905 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.134 -26.933 -2.070 29.217 hybrid contribution 1.204 0.703 0.061 1.395 sum 12.338 -26.230 -2.009 29.056 Atomic orbital electron populations 1.69986 1.06057 1.26527 1.50763 1.25039 0.94860 0.99309 0.95337 0.86526 0.80052 0.83774 0.77576 1.19761 1.21013 1.21012 1.21253 0.93028 0.90960 1.50648 0.92606 1.19037 0.93878 0.90893 0.97634 1.21876 0.99725 0.93437 1.00799 1.21614 0.91962 0.85261 1.01831 1.46213 1.10623 1.06018 1.74854 1.20602 0.89513 0.84065 0.75737 1.90668 1.17082 1.84920 1.50022 1.21603 0.97407 0.93513 1.01498 0.86101 1.21549 0.97336 0.98839 0.97282 1.21571 0.97775 0.94153 1.02336 1.21574 0.98433 0.98020 0.96873 1.21444 0.96892 1.01825 0.93061 0.88119 1.20714 0.80300 0.81067 0.87257 1.43935 1.38323 1.30866 1.29072 1.90716 1.69439 1.33608 1.47143 1.21115 0.95935 0.90688 1.03889 0.93010 0.96292 0.96285 0.92775 0.92804 0.91930 0.91911 0.76957 0.91264 0.91229 0.91128 0.91883 0.90279 0.91525 0.77215 0.76965 0.90488 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.47 5.27 -26.74 -0.14 -2.61 16 11 C 0.12 2.19 5.67 -4.04 -0.02 2.17 16 12 N -0.73 -11.45 5.45 -60.29 -0.33 -11.78 16 13 C 0.51 8.33 7.15 -10.98 -0.08 8.26 16 14 O -0.55 -10.97 15.98 5.56 0.09 -10.88 16 15 C -0.12 -1.45 2.23 -91.77 -0.20 -1.65 16 16 H 0.12 1.60 5.51 -51.93 -0.29 1.32 16 17 C -0.11 -1.05 5.10 -26.73 -0.14 -1.18 16 18 C -0.12 -0.83 5.70 -26.73 -0.15 -0.98 16 19 C -0.11 -0.59 5.36 -26.73 -0.14 -0.74 16 20 C -0.11 -0.80 3.01 -91.77 -0.28 -1.08 16 21 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 22 C 0.52 4.51 5.91 -10.99 -0.06 4.44 16 23 N -0.86 -3.95 8.77 31.22 0.27 -3.67 16 24 O -0.53 -7.10 14.49 5.55 0.08 -7.02 16 25 C -0.08 -0.86 3.66 -26.73 -0.10 -0.96 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.40 5.21 7.91 -40.82 -0.32 4.89 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.63 7.58 -51.93 -0.39 0.23 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.48 7.22 -51.93 -0.37 0.10 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.20 7.56 -51.93 -0.39 -0.19 16 40 H 0.40 0.62 8.25 -40.82 -0.34 0.29 16 41 H 0.40 1.64 8.93 -40.82 -0.36 1.27 16 42 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 43 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -35.92 344.03 -7.93 -43.85 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.08 Total: 1.59 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.87 Total: -7.51 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.68 Total: -42.02 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.17 Total: -17.90 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.92 -7.93 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345594045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.189 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds