Wall clock time and date at job start Tue Mar 31 2020 06:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99912 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00222 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00019 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.47210 * 300.00400 * 15 13 12 17 17 C 1.53002 * 109.46976 * 60.00298 * 15 13 12 18 18 C 1.53002 * 109.47454 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.46978 * 300.00078 * 18 17 15 20 20 C 1.53002 * 109.47415 * 59.99902 * 19 18 17 21 21 H 1.09002 * 109.47075 * 59.99390 * 20 19 18 22 22 C 1.50693 * 109.47531 * 180.02562 * 20 19 18 23 23 N 1.34777 * 119.99892 * 299.99851 * 22 20 19 24 24 O 1.21279 * 120.00474 * 119.99452 * 22 20 19 25 25 C 1.52997 * 109.47342 * 180.02562 * 15 13 12 26 26 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 32 32 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 33 33 H 0.96992 * 119.99570 * 0.02562 * 12 11 10 34 34 H 1.09004 * 109.46930 * 300.00098 * 17 15 13 35 35 H 1.09002 * 109.47067 * 60.00015 * 17 15 13 36 36 H 1.09001 * 109.47142 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.46838 * 59.99394 * 18 17 15 38 38 H 1.09002 * 109.47045 * 299.99833 * 19 18 17 39 39 H 1.09000 * 109.47140 * 179.97438 * 19 18 17 40 40 H 0.97004 * 120.00228 * 359.97438 * 23 22 20 41 41 H 0.97005 * 120.00328 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.47230 * 299.99432 * 25 15 13 43 43 H 1.08988 * 109.47529 * 59.99983 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 7 6.0396 -4.0181 0.0004 13 6 7.3646 -4.2644 -0.0001 14 8 8.1528 -3.3426 -0.0005 15 6 7.8669 -5.6852 -0.0002 16 1 7.5039 -6.1990 0.8900 17 6 7.3565 -6.4065 -1.2492 18 6 7.8659 -7.8492 -1.2491 19 6 9.3959 -7.8498 -1.2493 20 6 9.9064 -7.1286 -0.0002 21 1 9.5429 -7.6421 0.8899 22 6 11.4133 -7.1286 -0.0007 23 7 12.0872 -8.2959 -0.0009 24 8 12.0198 -6.0784 -0.0010 25 6 9.3969 -5.6853 -0.0001 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6810 0.8905 29 1 3.6577 -3.1507 0.8897 30 1 3.6584 -3.1504 -0.8902 31 1 5.9147 -2.1229 -0.8901 32 1 5.9147 -2.1231 0.8899 33 1 5.4093 -4.7553 0.0003 34 1 6.2665 -6.4065 -1.2488 35 1 7.7196 -5.8927 -2.1394 36 1 7.5019 -8.3632 -2.1387 37 1 7.5025 -8.3627 -0.3589 38 1 9.7593 -7.3363 -2.1394 39 1 9.7588 -8.8777 -1.2487 40 1 11.6022 -9.1359 -0.0003 41 1 13.0572 -8.2959 -0.0016 42 1 9.7603 -5.1715 -0.8901 43 1 9.7603 -5.1716 0.8898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345594055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:10 Heat of formation + Delta-G solvation = -119.977789 kcal Electronic energy + Delta-G solvation = -21852.861419 eV Core-core repulsion = 18509.991582 eV Total energy + Delta-G solvation = -3342.869837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69507 -39.51511 -37.41092 -35.49814 -34.09682 -33.33411 -31.88480 -31.16980 -30.95461 -27.22493 -24.43950 -23.95776 -22.40501 -21.36219 -20.63357 -20.07957 -19.60781 -18.00589 -17.12618 -16.76772 -16.50222 -15.76162 -15.52468 -15.38580 -14.94293 -14.57430 -14.32083 -14.04101 -13.91294 -13.54247 -13.06962 -12.78159 -12.74490 -12.56240 -12.02071 -11.91398 -11.69965 -11.50541 -11.11506 -11.04588 -11.00630 -10.88557 -10.68390 -10.15201 -10.09421 -10.03981 -9.94282 -9.75868 -9.43604 -9.22428 -8.82017 -8.55423 -6.06414 -4.05039 2.32128 2.76091 3.08770 3.31853 3.39053 3.40640 3.44201 4.23325 4.29837 4.32717 4.44783 4.67579 4.77547 4.84913 4.92379 4.95197 5.07403 5.19687 5.26304 5.27835 5.54569 5.59267 5.60458 5.65619 5.67481 5.78535 5.83327 6.01901 6.03184 6.20038 6.38348 6.41030 6.45604 6.71781 6.80805 6.94256 7.23282 7.36713 7.66673 7.77240 7.93044 8.38106 8.50345 8.97307 9.56020 11.06778 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039927 B = 0.002629 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.114299 B =10646.903896 C =11191.486936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.112 4.112 11 C 0.113 3.887 12 N -0.726 5.726 13 C 0.511 3.489 14 O -0.540 6.540 15 C -0.106 4.106 16 H 0.097 0.903 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.108 4.108 21 H 0.099 0.901 22 C 0.520 3.480 23 N -0.859 5.859 24 O -0.535 6.535 25 C -0.080 4.080 26 H 0.263 0.737 27 H 0.014 0.986 28 H 0.018 0.982 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.400 0.600 42 H 0.079 0.921 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.875 -22.840 -1.124 30.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.150 4.150 11 C -0.010 4.010 12 N -0.377 5.377 13 C 0.296 3.704 14 O -0.417 6.417 15 C -0.128 4.128 16 H 0.115 0.885 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.130 4.130 21 H 0.117 0.883 22 C 0.304 3.696 23 N -0.423 5.423 24 O -0.411 6.411 25 C -0.118 4.118 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.228 0.772 41 H 0.230 0.770 42 H 0.097 0.903 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.497 -21.239 -1.120 29.538 hybrid contribution 0.125 0.089 0.044 0.159 sum 20.622 -21.150 -1.076 29.559 Atomic orbital electron populations 1.69913 1.06308 1.26950 1.51031 1.25032 0.94760 0.99256 0.94471 0.86773 0.80416 0.83501 0.78603 1.20244 1.21370 1.18883 1.21095 0.89312 0.94486 1.51071 0.91022 1.19508 0.97254 0.91536 0.96666 1.21693 0.90698 1.00997 1.01656 1.21645 0.96066 0.81357 1.01899 1.46179 1.06747 1.09845 1.74926 1.20543 0.82496 0.91081 0.76239 1.90720 1.55338 1.46375 1.49303 1.21347 0.97303 0.93564 1.00575 0.88501 1.21581 1.00960 0.95517 0.97183 1.21514 0.94524 0.96502 1.02713 1.21568 0.96557 0.99853 0.96973 1.21390 0.91181 0.99560 1.00822 0.88264 1.20698 0.90529 0.83540 0.74800 1.43921 1.11038 1.08672 1.78635 1.90789 1.70483 1.31344 1.48455 1.21142 0.92110 0.93421 1.05106 0.92706 0.96747 0.96322 0.92138 0.92165 0.91851 0.91856 0.76748 0.90897 0.91054 0.90983 0.91321 0.91093 0.91436 0.77158 0.76973 0.90278 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 10 C -0.11 -2.09 5.27 -26.74 -0.14 -2.23 16 11 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 12 N -0.73 -9.74 5.45 -60.29 -0.33 -10.06 16 13 C 0.51 7.19 7.15 -10.99 -0.08 7.11 16 14 O -0.54 -10.11 15.98 5.55 0.09 -10.02 16 15 C -0.11 -1.01 2.52 -91.77 -0.23 -1.24 16 16 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 17 C -0.11 -0.85 5.10 -26.73 -0.14 -0.99 16 18 C -0.12 -0.58 5.92 -26.73 -0.16 -0.73 16 19 C -0.11 -0.58 5.10 -26.73 -0.14 -0.72 16 20 C -0.11 -0.77 2.53 -91.74 -0.23 -1.00 16 21 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 22 C 0.52 4.67 7.43 -10.99 -0.08 4.58 16 23 N -0.86 -4.00 8.77 31.22 0.27 -3.73 16 24 O -0.54 -7.64 16.82 5.56 0.09 -7.55 16 25 C -0.08 -0.85 3.07 -26.70 -0.08 -0.93 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.40 4.19 7.89 -40.82 -0.32 3.87 16 34 H 0.07 0.49 7.56 -51.93 -0.39 0.09 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.20 7.56 -51.93 -0.39 -0.20 16 40 H 0.40 0.60 8.25 -40.82 -0.34 0.26 16 41 H 0.40 1.63 8.93 -40.82 -0.36 1.27 16 42 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 43 H 0.08 1.01 8.06 -51.94 -0.42 0.59 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -36.67 346.93 -7.61 -44.28 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.23 Total: -0.49 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.84 Total: -7.88 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.72 Total: -40.79 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.18 Total: -17.56 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.67 -7.61 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345594055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.702 kcal (2) G-P(sol) polarization free energy of solvation -36.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds