Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81402 * 109.47074 * 2 1 4 4 C 1.81407 * 102.99764 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.05590 * 53.58607 * 4 3 2 6 6 C 1.54259 * 110.03126 * 292.16784 * 4 3 2 7 7 C 1.54888 * 104.19482 * 217.10664 * 6 4 3 8 8 C 1.54884 * 102.75222 * 37.94468 * 7 6 4 9 9 C 1.53876 * 110.02868 * 175.00011 * 4 3 2 10 10 H 1.08997 * 110.07294 * 238.59199 * 9 4 3 11 11 N 1.46891 * 110.03511 * 0.02562 * 9 4 3 12 12 C 1.46905 * 111.00240 * 203.61914 * 11 9 4 13 13 C 1.52997 * 109.47325 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.46952 * 54.99956 * 13 12 11 15 15 C 1.47206 * 109.47168 * 294.99733 * 13 12 11 16 16 N 5.95728 * 86.13163 * 335.45852 * 2 1 3 17 17 C 1.53002 * 109.46817 * 175.00015 * 13 12 11 18 18 C 1.50703 * 109.46865 * 184.99692 * 17 13 12 19 19 H 1.08006 * 120.00033 * 0.02562 * 18 17 13 20 20 C 1.37878 * 120.00279 * 179.97438 * 18 17 13 21 21 N 1.31517 * 119.99526 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00414 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47336 * 89.99604 * 22 20 18 24 24 H 1.48496 * 109.46948 * 209.99986 * 22 20 18 25 25 H 1.48509 * 109.46746 * 329.99789 * 22 20 18 26 26 H 1.09004 * 109.46733 * 299.99941 * 1 2 3 27 27 H 1.08999 * 109.47280 * 59.99455 * 1 2 3 28 28 H 1.08995 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46780 * 240.00604 * 2 1 3 30 30 H 1.08991 * 109.47515 * 120.00345 * 2 1 3 31 31 H 1.09003 * 110.48527 * 98.43063 * 6 4 3 32 32 H 1.08997 * 110.60368 * 335.83921 * 6 4 3 33 33 H 1.09000 * 110.75832 * 279.62795 * 7 6 4 34 34 H 1.09007 * 110.75953 * 156.26025 * 7 6 4 35 35 H 1.08997 * 110.49265 * 203.38264 * 8 7 6 36 36 H 1.08998 * 110.48861 * 80.73203 * 8 7 6 37 37 H 1.00899 * 111.00333 * 79.66415 * 11 9 4 38 38 H 1.08998 * 109.46948 * 59.99721 * 12 11 9 39 39 H 1.09000 * 109.46862 * 300.00038 * 12 11 9 40 40 H 1.08997 * 109.47047 * 304.99674 * 17 13 12 41 41 H 1.08997 * 109.47298 * 65.00333 * 17 13 12 42 42 H 0.97002 * 120.00026 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5058 -0.0008 5 1 4.2397 0.8599 -0.8250 6 6 4.4011 0.9026 1.3411 7 6 5.7453 1.6147 1.6330 8 6 5.4801 3.0598 1.1429 9 6 4.6231 2.8774 -0.1269 10 1 5.2585 2.8979 -1.0123 11 7 3.6123 3.9400 -0.2081 12 6 4.1557 5.1343 -0.8688 13 6 3.0760 6.2163 -0.9352 14 1 2.6938 6.4101 0.0671 15 6 1.9759 5.7594 -1.8000 16 7 1.1281 5.4068 -2.4687 17 6 3.6762 7.5011 -1.5094 18 6 2.6476 8.6015 -1.4610 19 1 1.6642 8.4042 -1.0603 20 6 2.9621 9.8603 -1.9273 21 7 4.1598 10.1006 -2.4148 22 14 1.6874 11.2244 -1.8666 23 1 1.7967 11.9469 -0.5740 24 1 1.9233 12.1723 -2.9851 25 1 0.3288 10.6381 -1.9927 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.5521 -0.1725 1.2441 32 1 3.6777 1.1159 2.1280 33 1 6.5560 1.1571 1.0660 34 1 5.9648 1.6031 2.7007 35 1 6.4185 3.5590 0.9013 36 1 4.9301 3.6234 1.8965 37 1 3.2506 4.1658 0.7064 38 1 4.4745 4.8772 -1.8790 39 1 5.0092 5.5064 -0.3021 40 1 4.5462 7.7908 -0.9201 41 1 3.9778 7.3310 -2.5430 42 1 4.3812 10.9863 -2.7425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348466525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = -0.513096 kcal Electronic energy + Delta-G solvation = -19798.121300 eV Core-core repulsion = 16903.184712 eV Total energy + Delta-G solvation = -2894.936588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.89238 -36.64234 -34.37253 -33.26893 -32.75385 -31.26113 -29.04836 -27.70598 -25.59579 -23.59930 -22.66086 -21.72649 -21.04205 -20.19189 -17.07381 -16.63852 -16.21945 -15.95832 -15.36502 -14.82078 -14.61920 -14.34393 -14.03067 -13.87960 -13.63109 -12.95720 -12.86997 -12.49792 -12.29130 -12.23667 -11.85659 -11.69499 -11.61813 -11.43717 -11.31103 -11.24010 -11.10868 -10.99941 -10.91460 -10.74524 -10.61980 -10.47710 -10.18476 -9.54663 -9.47415 -9.18716 -8.43038 -8.19599 -7.34882 -6.06953 -4.09642 1.76950 2.77033 3.31318 3.38192 3.43555 3.86388 3.97201 4.22712 4.31850 4.41008 4.46835 4.82876 4.85155 4.94966 5.00239 5.17005 5.20329 5.25706 5.30721 5.31402 5.38485 5.42025 5.60006 5.61823 5.65411 5.72395 5.74698 5.77025 5.89002 5.96427 6.00807 6.06782 6.09456 6.44620 6.55155 7.13576 7.45271 7.52381 7.57440 7.88822 8.26739 8.71609 8.95430 9.55701 11.04016 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021274 B = 0.003883 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.835554 B = 7209.569565 C = 8220.867580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 S -0.174 6.174 4 C -0.064 4.064 5 H 0.083 0.917 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.152 4.152 9 C 0.106 3.894 10 H 0.088 0.912 11 N -0.676 5.676 12 C 0.068 3.932 13 C 0.011 3.989 14 H 0.097 0.903 15 C 0.254 3.746 16 N -0.475 5.475 17 C 0.032 3.968 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.346 0.654 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.026 0.974 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -19.906 9.600 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.271 4.271 3 S 0.054 5.946 4 C -0.194 4.194 5 H 0.102 0.898 6 C -0.161 4.161 7 C -0.158 4.158 8 C -0.191 4.191 9 C -0.006 4.006 10 H 0.107 0.893 11 N -0.307 5.307 12 C -0.061 4.061 13 C -0.011 4.011 14 H 0.115 0.885 15 C -0.063 4.063 16 N -0.152 5.152 17 C -0.007 4.007 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.586 -19.595 7.893 21.185 hybrid contribution 1.066 0.133 0.864 1.379 sum 2.652 -19.463 8.757 21.506 Atomic orbital electron populations 1.21437 0.92689 1.01821 1.03200 1.23471 1.00219 0.99693 1.03764 1.87714 1.02587 1.06679 1.97621 1.23968 0.95457 0.99940 1.00029 0.89837 1.22822 0.97791 0.99254 0.96204 1.22405 0.96885 0.95479 1.01010 1.23147 1.00785 0.97268 0.97949 1.21955 0.91272 0.89479 0.97883 0.89338 1.60383 1.34330 1.09137 1.26862 1.22092 0.95698 0.88622 0.99695 1.19172 0.88699 0.96311 0.96941 0.88483 1.28757 0.93554 0.90819 0.93192 1.80963 1.11657 1.11512 1.11031 1.19158 0.96506 0.88053 0.96949 1.21158 0.98785 0.94751 1.41566 0.92485 1.24950 0.95336 0.98720 0.94972 1.69941 1.19688 1.22111 1.41414 0.86598 0.82039 0.81832 0.77675 1.20510 1.21180 1.19809 0.91915 0.91691 0.91905 0.91028 0.91140 0.91868 0.90265 0.91471 0.91368 0.91056 0.90868 0.83372 0.90588 0.93289 0.94569 0.95610 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.92 37.16 0.37 -0.91 16 2 C -0.12 -1.23 6.55 37.16 0.24 -0.99 16 3 S -0.17 -2.19 19.23 -107.50 -2.07 -4.26 16 4 C -0.06 -0.66 3.42 -25.62 -0.09 -0.75 16 5 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 6 C -0.12 -1.01 6.26 -25.08 -0.16 -1.17 16 7 C -0.12 -0.90 6.91 -24.74 -0.17 -1.08 16 8 C -0.15 -1.35 6.39 -25.07 -0.16 -1.51 16 9 C 0.11 1.13 3.22 -66.59 -0.21 0.92 16 10 H 0.09 0.97 7.83 -51.93 -0.41 0.56 16 11 N -0.68 -8.82 4.13 -105.54 -0.44 -9.25 16 12 C 0.07 1.00 4.87 -3.82 -0.02 0.98 16 13 C 0.01 0.20 2.36 -93.40 -0.22 -0.02 16 14 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 15 C 0.25 5.45 13.67 -20.76 -0.28 5.17 16 16 N -0.47 -11.14 18.54 42.15 0.78 -10.36 16 17 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 18 C -0.52 -14.09 8.60 -34.44 -0.30 -14.39 16 19 H 0.06 1.53 7.59 -52.48 -0.40 1.14 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 22 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.71 7.82 -51.93 -0.41 0.30 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.67 7.58 -51.93 -0.39 0.28 16 37 H 0.35 4.35 7.97 -39.29 -0.31 4.04 16 38 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 39 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -30.28 357.19 -9.23 -39.51 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.39 Total: -1.04 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.22 Total: -11.49 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 1.08 Total: -44.58 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.07 Total: -4.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.28 -9.23 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348466525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.998 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds