Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81402 * 109.47074 * 2 1 4 4 C 1.81407 * 102.99764 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.05590 * 53.58607 * 4 3 2 6 6 C 1.54259 * 110.03126 * 292.16784 * 4 3 2 7 7 C 1.54888 * 104.19482 * 217.10664 * 6 4 3 8 8 C 1.54884 * 102.75222 * 37.94468 * 7 6 4 9 9 C 1.53876 * 110.02868 * 175.00011 * 4 3 2 10 10 H 1.08997 * 110.07294 * 238.59199 * 9 4 3 11 11 N 1.46891 * 110.03511 * 0.02562 * 9 4 3 12 12 C 1.46905 * 111.00240 * 203.61914 * 11 9 4 13 13 C 1.52997 * 109.47325 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.46952 * 54.99956 * 13 12 11 15 15 C 1.47206 * 109.47168 * 294.99733 * 13 12 11 16 16 N 5.95728 * 86.13163 * 335.45852 * 2 1 3 17 17 C 1.53002 * 109.46817 * 175.00015 * 13 12 11 18 18 C 1.50703 * 109.46865 * 184.99692 * 17 13 12 19 19 H 1.08006 * 120.00033 * 0.02562 * 18 17 13 20 20 C 1.37878 * 120.00279 * 179.97438 * 18 17 13 21 21 N 1.31517 * 119.99526 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00414 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47336 * 89.99604 * 22 20 18 24 24 H 1.48496 * 109.46948 * 209.99986 * 22 20 18 25 25 H 1.48509 * 109.46746 * 329.99789 * 22 20 18 26 26 H 1.09004 * 109.46733 * 299.99941 * 1 2 3 27 27 H 1.08999 * 109.47280 * 59.99455 * 1 2 3 28 28 H 1.08995 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46780 * 240.00604 * 2 1 3 30 30 H 1.08991 * 109.47515 * 120.00345 * 2 1 3 31 31 H 1.09003 * 110.48527 * 98.43063 * 6 4 3 32 32 H 1.08997 * 110.60368 * 335.83921 * 6 4 3 33 33 H 1.09000 * 110.75832 * 279.62795 * 7 6 4 34 34 H 1.09007 * 110.75953 * 156.26025 * 7 6 4 35 35 H 1.08997 * 110.49265 * 203.38264 * 8 7 6 36 36 H 1.08998 * 110.48861 * 80.73203 * 8 7 6 37 37 H 1.00899 * 111.00333 * 79.66415 * 11 9 4 38 38 H 1.08998 * 109.46948 * 59.99721 * 12 11 9 39 39 H 1.09000 * 109.46862 * 300.00038 * 12 11 9 40 40 H 1.08997 * 109.47047 * 304.99674 * 17 13 12 41 41 H 1.08997 * 109.47298 * 65.00333 * 17 13 12 42 42 H 0.97002 * 120.00026 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5058 -0.0008 5 1 4.2397 0.8599 -0.8250 6 6 4.4011 0.9026 1.3411 7 6 5.7453 1.6147 1.6330 8 6 5.4801 3.0598 1.1429 9 6 4.6231 2.8774 -0.1269 10 1 5.2585 2.8979 -1.0123 11 7 3.6123 3.9400 -0.2081 12 6 4.1557 5.1343 -0.8688 13 6 3.0760 6.2163 -0.9352 14 1 2.6938 6.4101 0.0671 15 6 1.9759 5.7594 -1.8000 16 7 1.1281 5.4068 -2.4687 17 6 3.6762 7.5011 -1.5094 18 6 2.6476 8.6015 -1.4610 19 1 1.6642 8.4042 -1.0603 20 6 2.9621 9.8603 -1.9273 21 7 4.1598 10.1006 -2.4148 22 14 1.6874 11.2244 -1.8666 23 1 1.7967 11.9469 -0.5740 24 1 1.9233 12.1723 -2.9851 25 1 0.3288 10.6381 -1.9927 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.5521 -0.1725 1.2441 32 1 3.6777 1.1159 2.1280 33 1 6.5560 1.1571 1.0660 34 1 5.9648 1.6031 2.7007 35 1 6.4185 3.5590 0.9013 36 1 4.9301 3.6234 1.8965 37 1 3.2506 4.1658 0.7064 38 1 4.4745 4.8772 -1.8790 39 1 5.0092 5.5064 -0.3021 40 1 4.5462 7.7908 -0.9201 41 1 3.9778 7.3310 -2.5430 42 1 4.3812 10.9863 -2.7425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348466525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = -16.232063 kcal Electronic energy + Delta-G solvation = -19798.802926 eV Core-core repulsion = 16903.184712 eV Total energy + Delta-G solvation = -2895.618214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78738 -38.14857 -35.86708 -35.01564 -33.60195 -32.83639 -29.77247 -29.05429 -27.01824 -24.49126 -24.04034 -23.44935 -21.70058 -21.04716 -18.64225 -18.28762 -17.36452 -16.97690 -16.56296 -16.17514 -15.60877 -15.42055 -15.29778 -14.88405 -14.75753 -14.27737 -14.21537 -13.80728 -13.67373 -13.42497 -13.22487 -13.08928 -12.95437 -12.65746 -12.53550 -12.46322 -12.30791 -12.26982 -12.02261 -11.89833 -11.87459 -11.55241 -11.51666 -11.35679 -11.08838 -10.53857 -10.39109 -9.18013 -8.31285 -8.18642 -6.26518 0.91920 1.40362 1.42481 1.51945 1.93216 2.14675 2.22754 2.42477 3.16711 3.24478 3.42055 3.58036 3.68002 4.08055 4.13846 4.18209 4.23055 4.38305 4.44991 4.49583 4.53788 4.57514 4.61117 4.77007 4.83167 4.84864 4.88205 4.94078 4.98126 5.04518 5.14729 5.19319 5.23405 5.25996 5.45219 5.48029 5.64031 5.80478 6.09012 6.24322 6.53506 6.85292 7.00558 7.41953 8.92301 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021274 B = 0.003883 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.835554 B = 7209.569565 C = 8220.867580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 S -0.243 6.243 4 C -0.051 4.051 5 H 0.083 0.917 6 C -0.114 4.114 7 C -0.112 4.112 8 C -0.147 4.147 9 C 0.103 3.897 10 H 0.086 0.914 11 N -0.684 5.684 12 C 0.083 3.917 13 C 0.021 3.979 14 H 0.115 0.885 15 C 0.264 3.736 16 N -0.513 5.513 17 C 0.039 3.961 18 C -0.539 4.539 19 H 0.052 0.948 20 C 0.012 3.988 21 N -0.923 5.923 22 Si 0.948 3.052 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.277 1.277 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.350 0.650 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.036 0.964 41 H -0.001 1.001 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -21.027 11.066 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.256 4.256 3 S -0.016 6.016 4 C -0.181 4.181 5 H 0.102 0.898 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.187 4.187 9 C -0.008 4.008 10 H 0.104 0.896 11 N -0.316 5.316 12 C -0.047 4.047 13 C -0.001 4.001 14 H 0.133 0.867 15 C -0.052 4.052 16 N -0.190 5.190 17 C 0.001 3.999 18 C -0.577 4.577 19 H 0.070 0.930 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.774 3.226 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.202 1.202 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.170 0.830 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.167 -20.729 9.373 22.852 hybrid contribution 0.875 0.429 0.394 1.051 sum 3.041 -20.300 9.768 22.732 Atomic orbital electron populations 1.21447 0.92524 1.02910 1.02129 1.23436 1.00208 0.97341 1.04633 1.87904 1.05681 1.10165 1.97813 1.23966 0.93029 0.99769 1.01336 0.89824 1.22755 0.97932 0.99970 0.94653 1.22391 0.96592 0.94269 1.01855 1.23086 1.00451 0.98327 0.96789 1.22031 0.90987 0.88896 0.98884 0.89610 1.60324 1.35392 1.08703 1.27153 1.21859 0.94588 0.88291 0.99946 1.19154 0.88731 0.95580 0.96598 0.86715 1.29323 0.93341 0.89867 0.92663 1.80956 1.13021 1.12873 1.12197 1.18973 0.95893 0.89398 0.95670 1.21557 0.99271 0.95892 1.40947 0.92963 1.25697 0.97035 1.01031 0.94913 1.70032 1.21187 1.22707 1.42416 0.85701 0.79412 0.79311 0.78198 1.19056 1.20972 1.20235 0.92285 0.93461 0.89637 0.90731 0.89513 0.90558 0.90757 0.90573 0.90204 0.90553 0.91024 0.83017 0.91476 0.91342 0.94573 0.98229 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.92 71.98 0.71 -1.69 16 2 C -0.11 -2.01 6.55 71.98 0.47 -1.54 16 3 S -0.24 -5.99 19.23 -56.49 -1.09 -7.08 16 4 C -0.05 -0.98 3.42 31.32 0.11 -0.87 16 5 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.11 -1.61 6.26 31.67 0.20 -1.41 16 7 C -0.11 -1.38 6.91 31.88 0.22 -1.16 16 8 C -0.15 -2.27 6.39 31.67 0.20 -2.06 16 9 C 0.10 2.05 3.22 45.65 0.15 2.20 16 10 H 0.09 1.76 7.83 -2.39 -0.02 1.74 16 11 N -0.68 -17.16 4.13 -487.83 -2.02 -19.18 16 12 C 0.08 2.35 4.87 86.30 0.42 2.77 16 13 C 0.02 0.78 2.36 -12.60 -0.03 0.75 16 14 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 15 C 0.26 11.40 13.67 89.44 1.22 12.62 16 16 N -0.51 -24.35 18.54 20.01 0.37 -23.98 16 17 C 0.04 1.84 4.42 29.85 0.13 1.97 16 18 C -0.54 -28.97 8.60 25.60 0.22 -28.75 16 19 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 20 C 0.01 0.67 5.46 84.65 0.46 1.13 16 21 N -0.92 -53.39 13.29 21.45 0.28 -53.10 16 22 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.34 8.14 -2.40 -0.02 1.32 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.16 7.82 -2.39 -0.02 1.14 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.15 7.58 -2.39 -0.02 1.13 16 37 H 0.35 8.38 7.97 -89.69 -0.72 7.67 16 38 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 39 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -64.85 357.19 4.33 -60.51 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.27 Total: 12.87 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 4.49 Total: -16.04 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -1.36 Total: -96.26 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.09 Total: -7.08 kcal Total: -64.85 4.33 -60.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348466525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.281 kcal (2) G-P(sol) polarization free energy of solvation -64.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds