Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99893 * 2 1 4 4 H 1.48495 * 109.47008 * 239.99922 * 3 2 1 5 5 H 1.48494 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46954 * 119.99996 * 3 2 1 7 7 C 1.37880 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99910 * 182.24385 * 7 2 1 9 9 C 1.50693 * 120.00114 * 2.24520 * 7 2 1 10 10 C 1.53004 * 115.54847 * 324.29910 * 9 7 2 11 11 N 1.46496 * 109.47271 * 306.55852 * 10 9 7 12 12 C 1.34778 * 120.00065 * 175.00775 * 11 10 9 13 13 O 1.21587 * 119.99903 * 5.63581 * 12 11 10 14 14 N 1.34776 * 120.00113 * 185.63262 * 12 11 10 15 15 C 1.46498 * 120.00082 * 5.60290 * 14 12 11 16 16 C 1.52995 * 109.47425 * 264.65008 * 15 14 12 17 17 O 1.42901 * 109.47140 * 64.99692 * 16 15 14 18 18 C 1.46500 * 120.00072 * 185.60686 * 14 12 11 19 19 C 1.53004 * 109.46967 * 270.00010 * 18 14 12 20 20 C 1.52995 * 117.49642 * 243.62226 * 19 18 14 21 21 C 1.52998 * 117.49850 * 175.00018 * 19 18 14 22 22 C 1.53000 * 117.50044 * 109.96932 * 9 7 2 23 23 C 1.53002 * 117.50247 * 178.63331 * 9 7 2 24 24 H 0.97001 * 119.99707 * 5.00641 * 1 2 3 25 25 H 1.09004 * 109.47191 * 186.55274 * 10 9 7 26 26 H 1.09004 * 109.46642 * 66.55926 * 10 9 7 27 27 H 0.96998 * 119.99953 * 355.00804 * 11 10 9 28 28 H 1.08998 * 109.46773 * 24.64934 * 15 14 12 29 29 H 1.09000 * 109.47421 * 144.64279 * 15 14 12 30 30 H 1.09001 * 109.47323 * 184.99924 * 16 15 14 31 31 H 1.09001 * 109.47206 * 304.99969 * 16 15 14 32 32 H 0.96709 * 113.99869 * 180.02562 * 17 16 15 33 33 H 1.08999 * 109.47409 * 149.99939 * 18 14 12 34 34 H 1.08999 * 109.47343 * 29.99801 * 18 14 12 35 35 H 1.08995 * 115.55210 * 29.32572 * 19 18 14 36 36 H 1.08999 * 117.50313 * 0.02562 * 20 19 18 37 37 H 1.09003 * 117.50068 * 145.01935 * 20 19 18 38 38 H 1.08998 * 117.49993 * 214.97483 * 21 19 18 39 39 H 1.08996 * 117.50027 * 0.02562 * 21 19 18 40 40 H 1.09006 * 117.49782 * 215.00196 * 22 9 7 41 41 H 1.08988 * 117.49884 * 0.02654 * 22 9 7 42 42 H 1.09001 * 117.49640 * 359.97344 * 23 9 7 43 43 H 1.08994 * 117.50018 * 144.97187 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0372 9 6 1.2520 -2.4987 -0.0500 10 6 -0.0753 -2.5246 0.7106 11 7 0.1451 -2.0913 2.0925 12 6 -0.9028 -1.9383 2.9261 13 8 -2.0190 -2.2572 2.5644 14 7 -0.7136 -1.4318 4.1607 15 6 0.6069 -0.9338 4.5536 16 6 1.3678 -2.0352 5.2944 17 8 1.6236 -3.1209 4.4012 18 6 -1.8284 -1.3793 5.1097 19 6 -2.5673 -0.0485 4.9554 20 6 -2.5608 0.9058 6.1512 21 6 -3.8400 0.1527 5.7805 22 6 1.3437 -3.3177 -1.3391 23 6 2.0748 -3.7883 -0.0792 24 1 -0.4850 0.8369 -0.0733 25 1 -0.4763 -3.5383 0.7072 26 1 -0.7841 -1.8520 0.2275 27 1 1.0453 -1.9144 2.4076 28 1 1.1648 -0.6423 3.6637 29 1 0.4896 -0.0700 5.2079 30 1 2.3132 -1.6383 5.6640 31 1 0.7692 -2.3888 6.1339 32 1 2.1037 -3.8572 4.8044 33 1 -1.4446 -1.4661 6.1262 34 1 -2.5152 -2.2016 4.9093 35 1 -2.5385 0.3925 3.9591 36 1 -2.0298 0.5859 7.0477 37 1 -2.5276 1.9750 5.9417 38 1 -4.6483 0.7264 5.3270 39 1 -4.1506 -0.6628 6.4335 40 1 0.4584 -3.8751 -1.6453 41 1 1.9487 -2.9131 -2.1504 42 1 3.1605 -3.6930 -0.0622 43 1 1.6707 -4.6550 0.4438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355844899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = -20.135652 kcal Electronic energy + Delta-G solvation = -23750.509107 eV Core-core repulsion = 20411.968750 eV Total energy + Delta-G solvation = -3338.540357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.46235 -37.31594 -36.76038 -36.41795 -34.20577 -32.70623 -32.04306 -29.25070 -27.06006 -25.58139 -24.45243 -22.56860 -22.24419 -21.14048 -20.66364 -19.12044 -18.68400 -17.60867 -17.18589 -16.27045 -15.78424 -15.18808 -14.74326 -14.71197 -14.25859 -13.90715 -13.73299 -13.42164 -13.03146 -12.81869 -12.63474 -12.24111 -11.83761 -11.66329 -11.50796 -11.43371 -11.25654 -11.13106 -11.02757 -10.68018 -10.44419 -10.32086 -10.14365 -9.87099 -9.76033 -9.57950 -9.06239 -8.85159 -8.71130 -8.18527 -8.15117 -7.40567 -5.90377 -4.09645 3.24501 3.32617 3.33568 3.40034 3.96603 4.26682 4.35011 4.44565 4.83200 4.91414 5.03219 5.11560 5.19122 5.25860 5.34760 5.48793 5.50004 5.59899 5.67074 5.69797 5.84023 5.98541 6.04217 6.10426 6.17068 6.17514 6.45095 6.46881 6.68666 6.74367 6.89640 7.00491 7.10030 7.26847 7.36820 7.67925 7.78826 7.85253 8.02688 8.11254 8.43149 8.87433 9.22250 9.52234 9.77543 10.98900 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.006402 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.271369 B = 4372.497333 C = 4904.917615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.493 4.493 8 H 0.058 0.942 9 C 0.039 3.961 10 C 0.184 3.816 11 N -0.688 5.688 12 C 0.710 3.290 13 O -0.613 6.613 14 N -0.630 5.630 15 C 0.110 3.890 16 C 0.057 3.943 17 O -0.556 6.556 18 C 0.171 3.829 19 C -0.158 4.158 20 C -0.186 4.186 21 C -0.177 4.177 22 C -0.201 4.201 23 C -0.209 4.209 24 H 0.261 0.739 25 H 0.012 0.988 26 H 0.108 0.892 27 H 0.399 0.601 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.373 0.627 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 -0.865 13.569 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.038 3.962 10 C 0.060 3.940 11 N -0.339 5.339 12 C 0.411 3.589 13 O -0.493 6.493 14 N -0.367 5.367 15 C -0.014 4.014 16 C -0.022 4.022 17 O -0.360 6.360 18 C 0.047 3.953 19 C -0.178 4.178 20 C -0.223 4.223 21 C -0.215 4.215 22 C -0.239 4.239 23 C -0.246 4.246 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.126 0.874 27 H 0.235 0.765 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.219 0.781 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.835 -0.560 12.887 12.926 hybrid contribution 1.325 0.754 0.504 1.605 sum 0.490 0.194 13.391 13.401 Atomic orbital electron populations 1.69908 1.05540 1.26562 1.47930 1.24986 0.94800 0.98804 0.94386 0.86714 0.79577 0.83357 0.78658 1.20292 1.21327 1.20264 1.20438 0.92286 0.88667 1.51644 0.92384 1.19224 0.93317 0.89664 0.93958 1.20847 0.97584 0.95814 0.79712 1.44807 1.07766 1.69767 1.11586 1.15795 0.84993 0.78361 0.79718 1.90803 1.23663 1.59057 1.75807 1.46895 1.09239 1.66783 1.13798 1.21524 0.84221 0.94564 1.01130 1.22695 0.98032 0.89068 0.92422 1.86647 1.79741 1.29977 1.39659 1.20650 0.88042 0.95591 0.91033 1.22895 0.99995 0.98202 0.96674 1.23024 1.01835 0.98070 0.99370 1.22867 0.91682 1.03078 1.03859 1.22936 1.01365 1.06846 0.92784 1.22906 0.97891 1.00490 1.03331 0.92839 0.97013 0.87419 0.76486 0.89079 0.89718 0.93261 0.94043 0.78057 0.91682 0.89917 0.87308 0.89148 0.89260 0.89040 0.88981 0.91557 0.90370 0.90863 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.59 10.22 55.43 0.57 -23.02 16 2 C 0.07 1.94 5.28 -17.82 -0.09 1.85 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.49 -12.84 8.40 -34.44 -0.29 -13.13 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.04 0.96 2.03 -155.66 -0.32 0.65 16 10 C 0.18 4.67 4.62 -4.04 -0.02 4.65 16 11 N -0.69 -16.00 4.54 -65.22 -0.30 -16.30 16 12 C 0.71 16.23 8.03 -86.92 -0.70 15.53 16 13 O -0.61 -16.12 15.99 5.29 0.08 -16.04 16 14 N -0.63 -11.20 2.43 -179.43 -0.44 -11.63 16 15 C 0.11 1.63 5.65 -4.05 -0.02 1.61 16 16 C 0.06 0.69 7.39 37.15 0.27 0.96 16 17 O -0.56 -7.87 12.00 -35.23 -0.42 -8.29 16 18 C 0.17 2.58 5.67 -4.04 -0.02 2.56 16 19 C -0.16 -2.32 6.01 -90.62 -0.54 -2.86 16 20 C -0.19 -2.13 10.18 -26.73 -0.27 -2.40 16 21 C -0.18 -2.12 10.25 -26.73 -0.27 -2.40 16 22 C -0.20 -4.57 9.96 -26.69 -0.27 -4.83 16 23 C -0.21 -4.56 9.92 -26.69 -0.26 -4.82 16 24 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 25 H 0.01 0.30 8.08 -51.93 -0.42 -0.12 16 26 H 0.11 3.08 5.97 -51.93 -0.31 2.77 16 27 H 0.40 9.02 4.88 -40.82 -0.20 8.82 16 28 H 0.09 1.60 6.42 -51.93 -0.33 1.26 16 29 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.37 3.53 9.12 45.56 0.42 3.94 16 33 H 0.06 0.77 7.80 -51.93 -0.40 0.37 16 34 H 0.08 1.39 7.51 -51.93 -0.39 1.00 16 35 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 36 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.76 8.14 -51.94 -0.42 1.34 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -31.23 352.90 -9.27 -40.50 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -6.25 Total: 16.76 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.81 Total: -2.63 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.17 Total: -50.95 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.34 Total: -24.33 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.23 -9.27 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355844899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.369 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds