Wall clock time and date at job start Tue Mar 31 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00420 * 2 1 4 4 H 1.48498 * 109.47246 * 270.00218 * 3 2 1 5 5 H 1.48498 * 109.46526 * 29.99942 * 3 2 1 6 6 H 1.48502 * 109.47359 * 149.99800 * 3 2 1 7 7 C 1.37878 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00391 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99875 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47134 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99765 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00330 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00193 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47094 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47236 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.46981 * 180.02562 * 16 15 14 18 18 C 1.34777 * 119.99553 * 180.02562 * 17 16 15 19 19 O 1.21278 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.53781 * 113.61417 * 179.97438 * 20 18 17 22 22 C 1.53786 * 87.17350 * 139.93966 * 21 20 18 23 23 C 1.53782 * 113.61283 * 277.49692 * 20 18 17 24 24 H 0.96998 * 120.00110 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46767 * 59.99847 * 9 7 2 26 26 H 1.08992 * 109.47453 * 300.00168 * 9 7 2 27 27 H 1.08994 * 109.46926 * 60.00444 * 10 9 7 28 28 H 1.09004 * 109.47346 * 300.00104 * 10 9 7 29 29 H 0.97001 * 119.99668 * 0.02562 * 13 11 10 30 30 H 1.08994 * 109.47106 * 60.00448 * 14 13 11 31 31 H 1.09004 * 109.46972 * 300.00226 * 14 13 11 32 32 H 1.09000 * 109.47314 * 59.99600 * 15 14 13 33 33 H 1.08999 * 109.46658 * 300.00055 * 15 14 13 34 34 H 1.08994 * 109.47005 * 59.99952 * 16 15 14 35 35 H 1.09004 * 109.46932 * 299.99817 * 16 15 14 36 36 H 0.96993 * 120.00243 * 359.97438 * 17 16 15 37 37 H 1.08996 * 112.85169 * 48.79875 * 20 18 17 38 38 H 1.09002 * 113.61445 * 254.52965 * 21 20 18 39 39 H 1.09002 * 113.61408 * 25.34696 * 21 20 18 40 40 H 1.08993 * 113.61491 * 89.15923 * 22 21 20 41 41 H 1.09000 * 113.61138 * 220.06261 * 22 21 20 42 42 H 1.08997 * 113.61668 * 334.56418 * 23 20 18 43 43 H 1.08998 * 113.61674 * 105.38927 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5285 -2.6367 -0.0009 12 8 6.1349 -1.5864 -0.0005 13 7 6.2024 -3.8039 -0.0003 14 6 7.6673 -3.8039 0.0003 15 6 8.1773 -5.2464 0.0003 16 6 9.7073 -5.2465 0.0003 17 7 10.1956 -6.6277 -0.0003 18 6 11.5206 -6.8740 0.0001 19 8 12.3087 -5.9521 0.0005 20 6 12.0229 -8.2948 0.0001 21 6 13.5567 -8.4059 -0.0001 22 6 13.3962 -9.5730 0.9885 23 6 12.0545 -8.9371 1.3970 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6802 -0.8910 27 1 3.6578 -3.1506 -0.8907 28 1 3.6584 -3.1503 0.8893 29 1 5.7173 -4.6439 -0.0003 30 1 8.0302 -3.2899 0.8903 31 1 8.0310 -3.2903 -0.8897 32 1 7.8143 -5.7602 -0.8899 33 1 7.8135 -5.7603 0.8901 34 1 10.0706 -4.7327 0.8902 35 1 10.0706 -4.7327 -0.8897 36 1 9.5653 -7.3649 -0.0003 37 1 11.5405 -8.9143 -0.7559 38 1 13.9729 -8.7032 -0.9627 39 1 14.0575 -7.5373 0.4275 40 1 13.2896 -10.5437 0.5044 41 1 14.1400 -9.5756 1.7853 42 1 12.1443 -8.2143 2.2079 43 1 11.2574 -9.6619 1.5624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360316635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:30 Heat of formation + Delta-G solvation = -80.118659 kcal Electronic energy + Delta-G solvation = -20786.084615 eV Core-core repulsion = 17444.943200 eV Total energy + Delta-G solvation = -3341.141415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65254 -39.32725 -38.02281 -36.29590 -34.53748 -33.48033 -31.76045 -31.01744 -27.81488 -26.38889 -26.10516 -24.70335 -22.19215 -21.46107 -21.08604 -19.88121 -19.56588 -17.84666 -17.16345 -16.65186 -16.37360 -15.94240 -15.86002 -15.50939 -15.19025 -14.61907 -14.43688 -14.09302 -13.42871 -13.19871 -13.14935 -12.95481 -12.65950 -12.55198 -12.39472 -12.26730 -11.94579 -11.67721 -11.42466 -11.38856 -11.05596 -10.95602 -10.91055 -10.17326 -10.06819 -10.05081 -9.78531 -9.47680 -9.26698 -9.17456 -8.92392 -8.50904 -6.03372 -4.02161 2.24850 2.72029 3.10626 3.38142 3.43809 3.45427 3.55913 3.98582 4.07172 4.21084 4.30175 4.50966 4.52948 4.57300 4.64539 4.75903 5.03611 5.16195 5.18854 5.27170 5.28939 5.32253 5.37441 5.38043 5.47458 5.53859 5.59358 5.76013 5.85170 5.89886 6.03023 6.06848 6.08733 6.56705 6.68625 7.08429 7.36291 7.43226 7.72614 7.79256 7.84931 8.49421 8.63613 8.99535 9.59789 11.09408 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.059248 B = 0.001970 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.473824 B =14209.714934 C =14538.167897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.743 5.743 14 C 0.122 3.878 15 C -0.142 4.142 16 C 0.120 3.880 17 N -0.730 5.730 18 C 0.520 3.480 19 O -0.538 6.538 20 C -0.140 4.140 21 C -0.119 4.119 22 C -0.143 4.143 23 C -0.124 4.124 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.399 0.601 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.971 -23.034 0.841 33.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.298 3.702 12 O -0.415 6.415 13 N -0.397 5.397 14 C -0.003 4.003 15 C -0.180 4.180 16 C -0.004 4.004 17 N -0.382 5.382 18 C 0.307 3.693 19 O -0.415 6.415 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.180 4.180 23 C -0.162 4.162 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.233 0.767 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.830 -21.435 0.843 32.813 hybrid contribution -0.327 0.083 -0.095 0.351 sum 24.502 -21.352 0.749 32.509 Atomic orbital electron populations 1.69908 1.06292 1.26978 1.51052 1.24972 0.94712 0.99243 0.94310 0.86795 0.80626 0.83372 0.78761 1.20238 1.21431 1.18528 1.21114 0.89285 0.94562 1.51389 0.90938 1.19375 0.96408 0.90245 0.97690 1.21668 0.87897 1.03294 1.03324 1.21559 0.91614 0.82750 0.74317 1.90663 1.70841 1.31483 1.48545 1.46130 1.06306 1.09344 1.77965 1.21090 0.81236 0.95243 1.02713 1.21972 0.94721 0.97797 1.03522 1.21251 0.93100 0.82953 1.03096 1.46023 1.07278 1.08931 1.75930 1.20569 0.81985 0.91334 0.75434 1.90713 1.55378 1.46281 1.49077 1.22821 0.99288 0.93485 1.00555 1.22811 0.93302 0.99229 1.00313 1.22874 0.97417 0.98113 0.99598 1.22866 0.98642 0.99722 0.94937 0.92717 0.95819 0.96262 0.89611 0.89585 0.76748 0.91451 0.91454 0.90481 0.90476 0.91009 0.90979 0.76481 0.86903 0.90963 0.88663 0.89811 0.90861 0.89641 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 7 C -0.53 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 10 C -0.12 -2.32 5.64 -27.88 -0.16 -2.48 16 11 C 0.51 9.09 7.83 -10.98 -0.09 9.01 16 12 O -0.54 -11.98 15.98 5.55 0.09 -11.89 16 13 N -0.74 -9.18 5.56 -60.29 -0.33 -9.52 16 14 C 0.12 1.30 5.67 -4.04 -0.02 1.27 16 15 C -0.14 -0.93 5.44 -26.73 -0.15 -1.08 16 16 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 17 N -0.73 -4.83 5.56 -60.29 -0.33 -5.17 16 18 C 0.52 4.59 7.35 -10.98 -0.08 4.51 16 19 O -0.54 -7.13 15.90 5.56 0.09 -7.04 16 20 C -0.14 -0.80 4.15 -90.96 -0.38 -1.18 16 21 C -0.12 -0.73 7.40 -25.92 -0.19 -0.93 16 22 C -0.14 -0.62 8.10 -25.80 -0.21 -0.83 16 23 C -0.12 -0.57 7.64 -25.80 -0.20 -0.77 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.62 7.16 -51.92 -0.37 0.25 16 26 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.40 3.62 8.47 -40.82 -0.35 3.27 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.40 1.50 8.47 -40.82 -0.35 1.15 16 37 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.77 7.43 -51.93 -0.39 0.39 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -36.91 357.83 -8.35 -45.26 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.34 Total: -2.76 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.01 Total: -5.06 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.10 Total: -41.91 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.18 Total: -18.94 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.91 -8.35 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360316635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.855 kcal (2) G-P(sol) polarization free energy of solvation -36.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds