Wall clock time and date at job start Tue Mar 31 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48504 * 109.47229 * 270.00361 * 3 2 1 5 5 H 1.48503 * 109.47046 * 149.99948 * 3 2 1 6 6 H 1.48501 * 109.47151 * 29.99978 * 3 2 1 7 7 C 1.37870 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99821 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00274 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47374 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47141 * 179.97438 * 10 9 7 12 12 C 1.34783 * 120.00090 * 179.97438 * 11 10 9 13 13 O 1.21594 * 119.99673 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99998 * 179.97438 * 12 11 10 15 15 C 1.47426 * 125.65082 * 354.78764 * 14 12 11 16 16 C 1.55128 * 104.72219 * 155.81351 * 15 14 12 17 17 C 1.55153 * 101.48860 * 37.29530 * 16 15 14 18 18 C 1.47022 * 125.64810 * 175.09093 * 14 12 11 19 19 H 1.09002 * 109.88511 * 300.59949 * 18 14 12 20 20 C 1.53002 * 109.88089 * 61.60721 * 18 14 12 21 21 H 1.09003 * 110.33286 * 305.56457 * 20 18 14 22 22 C 1.54481 * 110.37242 * 183.31771 * 20 18 14 23 23 C 1.54510 * 104.06556 * 217.19165 * 22 20 18 24 24 C 1.54478 * 104.05777 * 359.97438 * 23 22 20 25 25 O 1.44419 * 110.37204 * 67.82252 * 20 18 14 26 26 H 0.97007 * 120.00104 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46798 * 299.99717 * 9 7 2 28 28 H 1.08998 * 109.47298 * 59.99858 * 9 7 2 29 29 H 1.09001 * 109.47288 * 299.99766 * 10 9 7 30 30 H 1.09005 * 109.47533 * 59.99586 * 10 9 7 31 31 H 0.96993 * 120.00146 * 359.97438 * 11 10 9 32 32 H 1.09002 * 110.36166 * 274.74399 * 15 14 12 33 33 H 1.08997 * 110.36187 * 37.06762 * 15 14 12 34 34 H 1.09000 * 111.19542 * 279.19063 * 16 15 14 35 35 H 1.09008 * 110.93861 * 155.28768 * 16 15 14 36 36 H 1.08996 * 110.72613 * 205.96679 * 17 16 15 37 37 H 1.09005 * 110.72323 * 82.69340 * 17 16 15 38 38 H 1.09007 * 110.51149 * 335.83875 * 22 20 18 39 39 H 1.09001 * 110.51383 * 98.54131 * 22 20 18 40 40 H 1.08997 * 110.51078 * 118.64476 * 23 22 20 41 41 H 1.08997 * 110.51046 * 241.21929 * 23 22 20 42 42 H 1.08999 * 110.36938 * 142.81409 * 24 23 22 43 43 H 1.09001 * 110.37379 * 265.03562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 3.5467 1.4402 0.7001 6 1 1.4465 2.6527 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0014 11 7 5.4865 -2.6365 -0.0014 12 6 6.1604 -3.8037 -0.0020 13 8 5.5524 -4.8567 -0.0030 14 7 7.5081 -3.8037 -0.0026 15 6 8.3673 -2.6106 -0.1115 16 6 9.7095 -3.0303 0.5434 17 6 9.8294 -4.5072 0.0832 18 6 8.3650 -4.9940 0.0989 19 1 8.1575 -5.5220 1.0297 20 6 8.1118 -5.9205 -1.0921 21 1 7.0509 -6.1593 -1.1674 22 6 8.9455 -7.2137 -0.9542 23 6 9.3801 -7.5365 -2.4013 24 6 8.7570 -6.4004 -3.2424 25 8 8.5772 -5.3073 -2.3140 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6797 -0.8895 28 1 3.8745 -0.6808 0.8905 29 1 3.6579 -3.1513 0.8879 30 1 3.6585 -3.1494 -0.8920 31 1 5.9714 -1.7965 -0.0010 32 1 8.5192 -2.3469 -1.1581 33 1 7.9260 -1.7747 0.4312 34 1 9.6559 -2.9629 1.6300 35 1 10.5351 -2.4325 0.1571 36 1 10.4344 -5.0818 0.7844 37 1 10.2442 -4.5651 -0.9232 38 1 9.8173 -7.0407 -0.3231 39 1 8.3345 -8.0208 -0.5498 40 1 10.4667 -7.5229 -2.4858 41 1 8.9859 -8.5041 -2.7117 42 1 9.4331 -6.1086 -4.0460 43 1 7.7963 -6.7138 -3.6510 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368504872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:27 Heat of formation + Delta-G solvation = -79.779546 kcal Electronic energy + Delta-G solvation = -22889.987049 eV Core-core repulsion = 19548.860339 eV Total energy + Delta-G solvation = -3341.126710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55467 -39.05976 -37.23905 -34.87922 -32.86336 -32.29598 -31.57892 -30.97477 -29.64264 -27.07297 -25.06758 -23.59341 -22.46495 -21.60744 -20.93793 -20.51354 -19.38732 -17.84139 -16.88901 -16.56766 -16.41490 -15.81341 -15.37715 -14.86899 -14.66359 -14.18045 -13.99532 -13.91123 -13.54223 -13.23654 -13.19109 -12.93816 -12.56578 -12.32544 -11.95039 -11.90481 -11.50955 -11.48959 -11.31476 -11.16077 -11.10385 -10.93882 -10.68548 -10.34515 -10.21129 -9.95760 -9.86385 -9.55225 -9.28234 -8.69854 -8.58394 -8.21224 -6.07942 -4.07656 2.84397 3.27825 3.35154 3.36772 3.53667 3.79828 4.21988 4.34409 4.40714 4.48197 4.56468 4.60605 4.75488 4.80569 4.98485 5.16636 5.19805 5.23330 5.25114 5.44359 5.49128 5.50268 5.58980 5.62944 5.68442 5.70116 5.78265 5.81108 5.92982 6.08816 6.13020 6.29857 6.42754 6.63123 6.75053 6.88690 7.16788 7.29291 7.38726 7.71161 8.32045 8.49154 8.95519 8.98645 9.52386 11.05169 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.003598 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.514859 B = 7780.638729 C = 8260.529556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.287 1.287 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.149 3.851 11 N -0.740 5.740 12 C 0.720 3.280 13 O -0.594 6.594 14 N -0.634 5.634 15 C 0.102 3.898 16 C -0.130 4.130 17 C -0.126 4.126 18 C 0.166 3.834 19 H 0.083 0.917 20 C 0.061 3.939 21 H 0.089 0.911 22 C -0.149 4.149 23 C -0.153 4.153 24 C 0.043 3.957 25 O -0.364 6.364 26 H 0.264 0.736 27 H 0.017 0.983 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.391 0.609 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.409 -10.258 -1.792 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.213 1.213 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.394 5.394 12 C 0.422 3.578 13 O -0.472 6.472 14 N -0.373 5.373 15 C -0.021 4.021 16 C -0.168 4.168 17 C -0.164 4.164 18 C 0.062 3.938 19 H 0.101 0.899 20 C 0.002 3.998 21 H 0.107 0.893 22 C -0.187 4.187 23 C -0.191 4.191 24 C -0.034 4.034 25 O -0.283 6.283 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 24.675 -10.670 -1.819 26.944 hybrid contribution 0.473 1.107 -0.065 1.205 sum 25.148 -9.564 -1.884 26.971 Atomic orbital electron populations 1.69908 1.06279 1.27000 1.50593 1.24994 0.94763 0.99127 0.94419 0.86748 0.80258 0.83546 0.78494 1.20230 1.19100 1.21301 1.20923 0.88642 0.94906 1.51450 0.90587 1.19791 0.97903 0.91464 0.96753 1.21368 0.74769 0.99810 1.01434 1.45538 1.08788 1.06225 1.78821 1.15516 0.79607 0.84833 0.77812 1.90869 1.66895 1.30670 1.58796 1.47534 1.03458 1.07652 1.78629 1.22269 0.90577 0.88500 1.00742 1.22762 0.96888 0.96303 1.00839 1.22654 0.94602 0.96042 1.03098 1.21401 0.89762 0.86199 0.96480 0.89908 1.23515 0.99440 0.91339 0.85525 0.89303 1.22964 1.00505 0.97971 0.97282 1.22905 1.01448 0.99506 0.95224 1.23378 0.99925 0.86999 0.93069 1.89150 1.87109 1.29457 1.22536 0.92587 0.96491 0.96069 0.92168 0.92218 0.77589 0.91304 0.91086 0.90686 0.89967 0.90420 0.89277 0.90552 0.90426 0.90850 0.90699 0.89402 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 9 C -0.02 -0.50 4.15 -27.89 -0.12 -0.62 16 10 C 0.15 3.22 5.61 -4.04 -0.02 3.20 16 11 N -0.74 -13.50 5.52 -65.22 -0.36 -13.86 16 12 C 0.72 13.30 8.31 -86.92 -0.72 12.58 16 13 O -0.59 -12.98 15.16 5.28 0.08 -12.90 16 14 N -0.63 -9.04 3.06 -168.55 -0.52 -9.56 16 15 C 0.10 1.11 6.69 -2.41 -0.02 1.09 16 16 C -0.13 -1.05 7.10 -24.47 -0.17 -1.22 16 17 C -0.13 -1.08 5.36 -24.90 -0.13 -1.21 16 18 C 0.17 1.98 2.78 -66.95 -0.19 1.80 16 19 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 20 C 0.06 0.75 2.99 -25.95 -0.08 0.68 16 21 H 0.09 1.43 6.61 -51.93 -0.34 1.08 16 22 C -0.15 -1.33 6.48 -25.16 -0.16 -1.49 16 23 C -0.15 -1.20 7.09 -25.16 -0.18 -1.37 16 24 C 0.04 0.42 7.63 37.93 0.29 0.71 16 25 O -0.36 -4.68 10.06 -35.23 -0.35 -5.04 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 28 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.39 6.14 6.87 -40.82 -0.28 5.86 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.72 7.11 -51.93 -0.37 0.35 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.09 0.81 6.87 -51.93 -0.36 0.45 16 38 H 0.08 0.57 7.06 -51.93 -0.37 0.20 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -33.87 338.55 -9.01 -42.88 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.14 Total: 2.79 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.93 Total: 0.82 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.10 Total: -50.36 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.27 Total: -17.93 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.87 -9.01 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368504872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.900 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds