Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46847 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99610 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00178 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99964 * 180.02562 * 12 11 10 15 15 C 1.47422 * 125.64556 * 359.69753 * 14 12 11 16 16 C 1.54694 * 104.93827 * 204.07452 * 15 14 12 17 17 C 1.55160 * 101.67591 * 323.27335 * 16 15 14 18 18 C 1.47024 * 125.64853 * 180.02562 * 14 12 11 19 19 H 1.08996 * 109.88254 * 59.33247 * 18 14 12 20 20 C 1.52999 * 109.87986 * 298.32076 * 18 14 12 21 21 H 1.09001 * 110.27452 * 302.09355 * 20 18 14 22 22 C 1.54951 * 110.31277 * 64.28826 * 20 18 14 23 23 C 1.55299 * 100.94327 * 155.35838 * 22 20 18 24 24 C 1.54388 * 102.25187 * 325.86890 * 23 22 20 25 25 O 1.43228 * 107.58932 * 21.35476 * 24 23 22 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 0.96996 * 120.00503 * 0.02562 * 11 10 9 32 32 H 1.09007 * 110.36701 * 322.99647 * 15 14 12 33 33 H 1.08992 * 110.36997 * 85.32584 * 15 14 12 34 34 H 1.09006 * 111.09868 * 205.10877 * 16 15 14 35 35 H 1.08992 * 110.82032 * 81.32152 * 16 15 14 36 36 H 1.08997 * 110.72208 * 276.97320 * 17 16 15 37 37 H 1.08997 * 110.87434 * 153.77091 * 17 16 15 38 38 H 1.08997 * 111.12843 * 273.28011 * 22 20 18 39 39 H 1.08997 * 111.11783 * 37.43759 * 22 20 18 40 40 H 1.09004 * 110.84684 * 207.68132 * 23 22 20 41 41 H 1.08997 * 110.85283 * 84.05984 * 23 22 20 42 42 H 1.08996 * 109.82864 * 261.84067 * 24 23 22 43 43 H 1.09001 * 109.82920 * 140.87253 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5128 -4.9307 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4026 -6.0979 0.0003 14 7 1.5129 -7.2652 0.0008 15 6 0.0458 -7.4103 0.0076 16 6 -0.2137 -8.8092 0.6147 17 6 0.9658 -9.6296 0.0288 18 6 2.1191 -8.6046 0.0009 19 1 2.7482 -8.7267 0.8826 20 6 2.9556 -8.7972 -1.2656 21 1 2.3366 -8.6577 -2.1519 22 6 4.1478 -7.8076 -1.2785 23 6 5.1470 -8.5616 -2.1977 24 6 4.8638 -10.0384 -1.8475 25 8 3.5526 -10.1037 -1.2750 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.5429 -4.9308 0.0011 32 1 -0.4090 -6.6372 0.6270 33 1 -0.3449 -7.3619 -1.0087 34 1 -1.1714 -9.2098 0.2821 35 1 -0.1632 -8.7748 1.7029 36 1 0.7324 -9.9755 -0.9781 37 1 1.2133 -10.4707 0.6763 38 1 3.8594 -6.8506 -1.7134 39 1 4.5584 -7.6743 -0.2777 40 1 6.1754 -8.2954 -1.9536 41 1 4.9329 -8.3641 -3.2480 42 1 5.6000 -10.3953 -1.1274 43 1 4.9036 -10.6468 -2.7511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368504873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -75.678222 kcal Electronic energy + Delta-G solvation = -23008.097410 eV Core-core repulsion = 19667.148547 eV Total energy + Delta-G solvation = -3340.948864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.66482 -38.94895 -37.46128 -35.08014 -33.20673 -32.03705 -31.55984 -30.97658 -28.95666 -27.23369 -24.57816 -23.40242 -22.12108 -21.73857 -21.37041 -20.75821 -19.32593 -18.15188 -17.10988 -16.69958 -16.24718 -15.97899 -15.05738 -14.93173 -14.57982 -14.32077 -13.74794 -13.61868 -13.41291 -13.27877 -13.07146 -12.92691 -12.68686 -12.27962 -12.20026 -11.65642 -11.53325 -11.43084 -11.31337 -10.98535 -10.96825 -10.70620 -10.51672 -10.36612 -10.17830 -9.97451 -9.65422 -9.50820 -8.71911 -8.66278 -8.43079 -8.26830 -6.45034 -4.14878 2.70179 3.42001 3.44328 3.45408 3.61300 3.78899 4.25232 4.35411 4.47357 4.55431 4.59277 4.74048 4.89737 4.95132 5.04852 5.14650 5.29450 5.33321 5.37574 5.44340 5.51392 5.59016 5.65288 5.73195 5.75470 5.84081 5.91410 6.02629 6.10698 6.24763 6.30270 6.32024 6.54472 6.61618 6.89999 6.94273 7.17259 7.34777 7.34901 8.06947 8.26703 8.37709 8.78844 8.90103 9.57089 10.96152 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.003674 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.344311 B = 7619.811274 C = 8617.613536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.601 4.601 8 H 0.054 0.946 9 C 0.000 4.000 10 C 0.148 3.852 11 N -0.738 5.738 12 C 0.710 3.290 13 O -0.581 6.581 14 N -0.633 5.633 15 C 0.098 3.902 16 C -0.132 4.132 17 C -0.120 4.120 18 C 0.160 3.840 19 H 0.078 0.922 20 C 0.072 3.928 21 H 0.066 0.934 22 C -0.125 4.125 23 C -0.169 4.169 24 C 0.054 3.946 25 O -0.382 6.382 26 H 0.268 0.732 27 H 0.013 0.987 28 H 0.012 0.988 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.391 0.609 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 -21.069 -1.851 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.902 3.098 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.640 4.640 8 H 0.072 0.928 9 C -0.038 4.038 10 C 0.026 3.974 11 N -0.392 5.392 12 C 0.413 3.587 13 O -0.460 6.460 14 N -0.374 5.374 15 C -0.025 4.025 16 C -0.171 4.171 17 C -0.158 4.158 18 C 0.055 3.945 19 H 0.096 0.904 20 C 0.013 3.987 21 H 0.083 0.917 22 C -0.162 4.162 23 C -0.207 4.207 24 C -0.022 4.022 25 O -0.301 6.301 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.224 0.776 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.247 -19.484 -1.785 19.694 hybrid contribution -0.199 -1.494 -0.177 1.517 sum 2.048 -20.977 -1.961 21.168 Atomic orbital electron populations 1.70776 1.06895 1.30553 1.46471 1.25882 0.96491 1.02812 0.93495 0.83473 0.74693 0.74816 0.76858 1.21352 1.21328 1.20950 1.21906 0.94573 0.91318 1.56184 0.92813 1.19454 0.94920 0.92905 0.96475 1.21422 0.95265 0.79898 1.00836 1.45606 1.09810 1.05202 1.78561 1.15594 0.85241 0.79502 0.78379 1.90949 1.11173 1.85732 1.58104 1.47570 1.06384 1.04176 1.79274 1.22236 0.81180 0.98174 1.00888 1.22746 0.98893 0.94367 1.01050 1.22614 0.93665 0.97157 1.02351 1.21345 0.94591 0.81211 0.97321 0.90370 1.23392 0.95340 0.82852 0.97103 0.91655 1.23635 0.93279 0.97875 1.01409 1.23322 1.01557 0.94958 1.00818 1.23067 0.84790 0.96866 0.97525 1.88320 1.29527 1.28845 1.83369 0.92158 0.96926 0.96939 0.92625 0.92583 0.77579 0.90641 0.91543 0.89763 0.90517 0.90380 0.89791 0.88964 0.88661 0.90356 0.91303 0.91619 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.29 13.65 55.43 0.76 -26.54 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 25.07 29.90 -169.99 -5.08 19.99 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.60 -16.88 9.11 -34.44 -0.31 -17.20 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.00 0.00 4.40 -27.88 -0.12 -0.12 16 10 C 0.15 3.19 5.61 -4.04 -0.02 3.16 16 11 N -0.74 -13.09 5.52 -65.23 -0.36 -13.45 16 12 C 0.71 12.28 7.91 -86.91 -0.69 11.59 16 13 O -0.58 -11.47 11.19 5.29 0.06 -11.41 16 14 N -0.63 -8.57 3.07 -168.83 -0.52 -9.09 16 15 C 0.10 1.00 6.56 -2.65 -0.02 0.98 16 16 C -0.13 -1.06 7.07 -24.70 -0.17 -1.24 16 17 C -0.12 -1.10 6.24 -24.90 -0.16 -1.25 16 18 C 0.16 1.98 2.88 -66.95 -0.19 1.79 16 19 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 20 C 0.07 0.93 2.99 -25.70 -0.08 0.85 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.12 -1.80 4.25 -24.48 -0.10 -1.91 16 23 C -0.17 -1.96 7.02 -24.78 -0.17 -2.13 16 24 C 0.05 0.59 7.79 37.88 0.30 0.88 16 25 O -0.38 -4.88 10.78 -35.23 -0.38 -5.26 16 26 H 0.27 7.92 7.22 -40.82 -0.29 7.62 16 27 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 28 H 0.01 0.31 8.01 -51.93 -0.42 -0.10 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.39 6.12 6.96 -40.82 -0.28 5.84 16 32 H 0.08 0.74 7.31 -51.93 -0.38 0.36 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.56 6.36 -51.93 -0.33 1.23 16 39 H 0.09 1.57 6.66 -51.93 -0.35 1.23 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -31.55 336.56 -9.45 -41.00 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.15 Total: 3.88 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.84 Total: -4.19 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.12 Total: -49.08 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.32 Total: -16.66 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.55 -9.45 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368504873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.678 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds