Wall clock time and date at job start Tue Mar 31 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00436 * 2 1 4 4 H 1.48497 * 109.47109 * 239.99634 * 3 2 1 5 5 H 1.48496 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47438 * 119.99771 * 3 2 1 7 7 C 1.37884 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99508 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47140 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.34766 * 119.99687 * 180.28160 * 11 10 9 13 13 O 1.21591 * 120.00460 * 359.71752 * 12 11 10 14 14 N 1.34779 * 120.00102 * 179.72488 * 12 11 10 15 15 C 1.47420 * 125.64489 * 354.59217 * 14 12 11 16 16 C 1.54696 * 104.93932 * 204.07370 * 15 14 12 17 17 C 1.55149 * 101.67945 * 323.27820 * 16 15 14 18 18 C 1.47022 * 125.64823 * 174.90358 * 14 12 11 19 19 H 1.09001 * 109.88606 * 59.32926 * 18 14 12 20 20 C 1.53003 * 109.88156 * 298.31573 * 18 14 12 21 21 H 1.09004 * 109.82094 * 64.82241 * 20 18 14 22 22 C 1.54379 * 109.83300 * 303.93305 * 20 18 14 23 23 C 1.55454 * 102.18297 * 219.18401 * 22 20 18 24 24 C 1.54937 * 100.99175 * 34.03756 * 23 22 20 25 25 O 1.43237 * 109.83142 * 185.70130 * 20 18 14 26 26 H 0.96999 * 119.99891 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47323 * 60.00155 * 9 7 2 28 28 H 1.09000 * 109.47217 * 299.99910 * 9 7 2 29 29 H 1.09001 * 109.46438 * 60.00161 * 10 9 7 30 30 H 1.08994 * 109.46760 * 300.00203 * 10 9 7 31 31 H 0.96994 * 120.00014 * 359.97438 * 11 10 9 32 32 H 1.08995 * 110.36973 * 323.00656 * 15 14 12 33 33 H 1.09000 * 110.36531 * 85.32984 * 15 14 12 34 34 H 1.08998 * 111.09951 * 205.10769 * 16 15 14 35 35 H 1.08997 * 110.84553 * 81.34057 * 16 15 14 36 36 H 1.08999 * 110.72083 * 276.97290 * 17 16 15 37 37 H 1.08994 * 110.87354 * 153.76908 * 17 16 15 38 38 H 1.08999 * 110.84438 * 337.31440 * 22 20 18 39 39 H 1.08995 * 110.85200 * 100.93881 * 22 20 18 40 40 H 1.09000 * 111.05600 * 276.11741 * 23 22 20 41 41 H 1.09003 * 111.14764 * 151.99405 * 23 22 20 42 42 H 1.09006 * 110.31214 * 204.69133 * 24 23 22 43 43 H 1.08997 * 110.39566 * 82.56854 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5126 -4.9309 -0.0001 12 6 2.1864 -6.0980 0.0055 13 8 3.4023 -6.0982 0.0059 14 7 1.5124 -7.2652 0.0106 15 6 0.0500 -7.4124 0.1235 16 6 -0.1650 -8.8347 0.6925 17 6 0.9649 -9.6295 -0.0137 18 6 2.1146 -8.6028 -0.0892 19 1 2.8092 -8.7591 0.7362 20 6 2.8512 -8.7436 -1.4228 21 1 3.6915 -8.0500 -1.4559 22 6 1.8835 -8.4501 -2.5893 23 6 2.3069 -9.5127 -3.6420 24 6 2.7078 -10.6947 -2.7240 25 8 3.3237 -10.0869 -1.5774 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8906 30 1 2.8718 -3.6044 -0.8894 31 1 0.5426 -4.9308 0.0000 32 1 -0.3549 -6.6651 0.8059 33 1 -0.4170 -7.3241 -0.8574 34 1 -1.1459 -9.2229 0.4183 35 1 -0.0320 -8.8439 1.7743 36 1 0.6548 -9.9355 -1.0128 37 1 1.2596 -10.4954 0.5792 38 1 0.8486 -8.6001 -2.2817 39 1 2.0330 -7.4409 -2.9729 40 1 3.1570 -9.1652 -4.2291 41 1 1.4705 -9.7822 -4.2870 42 1 3.4176 -11.3460 -3.2340 43 1 1.8249 -11.2594 -2.4245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368504874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:33 Heat of formation + Delta-G solvation = -82.379994 kcal Electronic energy + Delta-G solvation = -22950.926597 eV Core-core repulsion = 19609.687123 eV Total energy + Delta-G solvation = -3341.239474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74356 -39.09044 -37.22509 -34.80243 -32.90260 -32.19960 -31.56505 -30.94487 -29.16986 -27.36009 -24.92384 -23.48033 -22.22548 -22.04921 -21.25417 -20.48184 -19.19496 -17.75978 -16.81080 -16.66386 -16.38273 -15.95096 -15.27556 -14.71599 -14.56303 -14.37426 -14.04964 -13.71985 -13.48891 -13.38585 -13.04001 -12.86166 -12.47400 -12.24670 -11.89670 -11.69114 -11.49989 -11.45289 -11.37956 -11.16245 -11.04212 -10.99194 -10.64260 -10.53718 -10.29816 -9.91667 -9.67174 -9.54568 -9.26896 -8.66769 -8.44319 -8.16956 -6.08695 -4.11293 2.78135 3.32054 3.35617 3.39348 3.52828 3.80238 4.22686 4.31442 4.41329 4.45313 4.61840 4.69482 4.73662 4.75503 4.98655 5.06748 5.18334 5.24602 5.28403 5.44876 5.48562 5.54061 5.56730 5.66186 5.67656 5.75977 5.78875 5.89330 6.01976 6.06241 6.26266 6.40478 6.46469 6.77710 6.90421 7.01344 7.32299 7.56759 7.63607 7.90357 8.26005 8.39585 8.93072 9.00382 9.53363 11.02975 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028271 B = 0.003394 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.163494 B = 8248.209056 C = 8632.195648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.716 3.284 13 O -0.592 6.592 14 N -0.634 5.634 15 C 0.098 3.902 16 C -0.132 4.132 17 C -0.124 4.124 18 C 0.150 3.850 19 H 0.079 0.921 20 C 0.071 3.929 21 H 0.094 0.906 22 C -0.145 4.145 23 C -0.158 4.158 24 C 0.050 3.950 25 O -0.375 6.375 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.392 0.608 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 -22.316 -3.783 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.017 3.983 11 N -0.389 5.389 12 C 0.418 3.582 13 O -0.470 6.470 14 N -0.375 5.375 15 C -0.025 4.025 16 C -0.170 4.170 17 C -0.162 4.162 18 C 0.045 3.955 19 H 0.097 0.903 20 C 0.012 3.988 21 H 0.112 0.888 22 C -0.183 4.183 23 C -0.195 4.195 24 C -0.026 4.026 25 O -0.293 6.293 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.777 -22.163 -3.652 22.532 hybrid contribution -0.302 1.117 -0.157 1.168 sum -2.079 -21.045 -3.809 21.488 Atomic orbital electron populations 1.69945 1.06093 1.26958 1.50390 1.24991 0.94892 0.99386 0.94987 0.86566 0.79512 0.82620 0.78806 1.20105 1.21265 1.20089 1.21019 0.93248 0.90362 1.51369 0.92260 1.19311 0.94228 0.91053 0.97746 1.21607 0.95656 0.80356 1.00667 1.45566 1.09869 1.05125 1.78359 1.15595 0.85034 0.79524 0.78024 1.90896 1.11472 1.86003 1.58648 1.47581 1.06700 1.04318 1.78920 1.22240 0.81590 0.97948 1.00738 1.22732 0.99044 0.94351 1.00864 1.22684 0.94438 0.97520 1.01561 1.21548 0.95095 0.81322 0.97549 0.90334 1.23118 0.97275 0.84197 0.94183 0.88799 1.23153 1.00067 1.00214 0.94840 1.23302 1.02129 0.95777 0.98316 1.23369 0.97610 0.95387 0.86262 1.88418 1.66695 1.26518 1.47701 0.92813 0.96030 0.96016 0.92767 0.92768 0.77407 0.90540 0.91662 0.89882 0.90469 0.90518 0.89909 0.90234 0.90154 0.90408 0.90077 0.89945 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 10 C 0.14 3.05 5.61 -4.03 -0.02 3.03 16 11 N -0.74 -13.44 5.51 -65.22 -0.36 -13.80 16 12 C 0.72 13.04 8.24 -86.92 -0.72 12.33 16 13 O -0.59 -13.03 15.65 5.29 0.08 -12.95 16 14 N -0.63 -8.74 2.57 -168.83 -0.43 -9.17 16 15 C 0.10 0.99 6.09 -2.65 -0.02 0.97 16 16 C -0.13 -1.03 7.07 -24.70 -0.17 -1.21 16 17 C -0.12 -1.09 5.65 -24.90 -0.14 -1.23 16 18 C 0.15 1.88 2.88 -66.95 -0.19 1.68 16 19 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 20 C 0.07 0.92 3.23 -26.01 -0.08 0.84 16 21 H 0.09 1.54 7.18 -51.93 -0.37 1.17 16 22 C -0.15 -1.57 5.67 -24.70 -0.14 -1.71 16 23 C -0.16 -1.37 7.16 -24.41 -0.17 -1.54 16 24 C 0.05 0.44 7.37 38.18 0.28 0.73 16 25 O -0.37 -4.65 10.59 -35.23 -0.37 -5.02 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.39 6.28 7.08 -40.82 -0.29 6.00 16 32 H 0.08 0.76 7.51 -51.93 -0.39 0.37 16 33 H 0.07 0.59 7.80 -51.93 -0.40 0.19 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.62 5.38 -51.93 -0.28 0.34 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.77 5.51 -51.93 -0.29 0.48 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.43 7.71 -51.93 -0.40 0.03 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -32.36 339.02 -9.23 -41.59 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.04 Total: 2.42 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.93 Total: 0.80 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.06 Total: -48.39 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.29 Total: -17.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.36 -9.23 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368504874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.787 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds