Wall clock time and date at job start Tue Mar 31 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00000 * 2 1 4 4 H 1.48497 * 109.46783 * 240.00145 * 3 2 1 5 5 H 1.48497 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47204 * 120.00025 * 3 2 1 7 7 C 1.37876 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46978 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46823 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00056 * 180.02562 * 11 10 9 13 13 O 1.21597 * 119.99801 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00308 * 179.97438 * 12 11 10 15 15 C 1.47417 * 125.64613 * 354.73602 * 14 12 11 16 16 C 1.55139 * 104.72032 * 155.81896 * 15 14 12 17 17 C 1.55153 * 101.48485 * 37.29483 * 16 15 14 18 18 C 1.47028 * 125.64887 * 175.04391 * 14 12 11 19 19 H 1.09007 * 109.88113 * 300.59633 * 18 14 12 20 20 C 1.53005 * 109.88240 * 61.60230 * 18 14 12 21 21 H 1.08999 * 109.87228 * 294.02674 * 20 18 14 22 22 C 1.54106 * 109.87625 * 55.03062 * 20 18 14 23 23 C 1.54812 * 104.18366 * 121.45234 * 22 20 18 24 24 C 1.54989 * 102.09403 * 20.88184 * 23 22 20 25 25 O 1.43738 * 109.87631 * 173.01750 * 20 18 14 26 26 H 0.96996 * 119.99559 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47014 * 60.00320 * 9 7 2 28 28 H 1.09000 * 109.47158 * 300.00160 * 9 7 2 29 29 H 1.09000 * 109.47188 * 299.99995 * 10 9 7 30 30 H 1.08999 * 109.47106 * 60.00231 * 10 9 7 31 31 H 0.96999 * 120.00622 * 359.97438 * 11 10 9 32 32 H 1.09005 * 110.36688 * 274.74452 * 15 14 12 33 33 H 1.08997 * 110.37021 * 37.07237 * 15 14 12 34 34 H 1.09001 * 111.18815 * 279.19055 * 16 15 14 35 35 H 1.09002 * 110.93508 * 155.29032 * 16 15 14 36 36 H 1.08999 * 110.71701 * 205.96868 * 17 16 15 37 37 H 1.08998 * 110.72064 * 82.69910 * 17 16 15 38 38 H 1.08989 * 110.48668 * 240.13118 * 22 20 18 39 39 H 1.09006 * 110.48447 * 2.78120 * 22 20 18 40 40 H 1.08997 * 110.90446 * 139.08407 * 23 22 20 41 41 H 1.09000 * 110.90550 * 262.68201 * 23 22 20 42 42 H 1.08993 * 110.61917 * 81.47556 * 24 23 22 43 43 H 1.09006 * 110.61773 * 204.47777 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 7 1.5129 -4.9307 0.0033 12 6 2.1868 -6.0979 0.0047 13 8 3.4027 -6.0979 0.0051 14 7 1.5129 -7.2652 0.0057 15 6 0.0502 -7.4127 0.1153 16 6 -0.2577 -8.7851 -0.5392 17 6 0.9616 -9.6272 -0.0794 18 6 2.1154 -8.6025 -0.0959 19 1 2.6759 -8.6868 -1.0270 20 6 3.0450 -8.8463 1.0947 21 1 3.8956 -8.1664 1.0459 22 6 2.2762 -8.6299 2.4126 23 6 2.3999 -9.9850 3.1508 24 6 3.6374 -10.6170 2.4644 25 8 3.5061 -10.2076 1.0839 26 1 -0.4849 0.8400 -0.0004 27 1 0.6242 -2.5575 -0.8880 28 1 0.6248 -2.5563 0.8920 29 1 2.8721 -3.6051 -0.8873 30 1 2.8720 -3.6035 0.8927 31 1 0.5429 -4.9308 0.0033 32 1 -0.2537 -7.4122 1.1621 33 1 -0.4534 -6.6126 -0.4272 34 1 -0.2898 -8.7051 -1.6258 35 1 -1.1880 -9.2011 -0.1525 36 1 1.1564 -10.4386 -0.7806 37 1 0.8048 -10.0152 0.9271 38 1 2.7372 -7.8336 2.9968 39 1 1.2301 -8.3996 2.2106 40 1 2.5805 -9.8331 4.2150 41 1 1.5120 -10.5970 2.9919 42 1 4.5581 -10.2219 2.8938 43 1 3.6093 -11.7035 2.5472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368504875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:36 Heat of formation + Delta-G solvation = -81.385930 kcal Electronic energy + Delta-G solvation = -22931.401857 eV Core-core repulsion = 19590.205489 eV Total energy + Delta-G solvation = -3341.196368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71204 -39.04554 -37.23648 -34.81054 -32.91055 -32.15017 -31.55462 -30.91012 -29.16766 -27.21291 -24.92971 -23.53489 -22.51417 -21.69679 -21.25223 -20.46911 -19.19620 -17.73982 -17.12597 -16.39609 -16.28103 -15.70491 -15.16066 -14.92786 -14.62705 -14.53471 -13.90978 -13.73634 -13.49487 -13.42227 -13.10853 -12.69392 -12.52704 -12.24391 -11.93174 -11.59691 -11.42767 -11.41345 -11.29798 -11.15448 -11.00926 -10.75437 -10.70959 -10.64224 -10.30199 -9.96790 -9.68286 -9.53294 -9.26619 -8.70260 -8.44946 -8.18152 -6.08693 -4.11357 2.76987 3.31982 3.35572 3.39222 3.52279 3.85073 4.25414 4.36520 4.41923 4.48936 4.59913 4.68626 4.80731 4.82457 4.99654 5.10281 5.19123 5.27457 5.28383 5.44820 5.50625 5.54605 5.60157 5.64336 5.73594 5.79549 5.87021 5.89903 6.04751 6.07250 6.25254 6.40275 6.43887 6.77546 6.80996 7.01051 7.30965 7.56619 7.63596 7.90330 8.25802 8.39034 8.92897 8.99796 9.53337 11.02969 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.003365 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.657810 B = 8318.662851 C = 8759.325608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.717 3.283 13 O -0.592 6.592 14 N -0.635 5.635 15 C 0.098 3.902 16 C -0.133 4.133 17 C -0.120 4.120 18 C 0.161 3.839 19 H 0.078 0.922 20 C 0.066 3.934 21 H 0.086 0.914 22 C -0.146 4.146 23 C -0.155 4.155 24 C 0.047 3.953 25 O -0.373 6.373 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.392 0.608 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 -22.432 3.694 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.389 5.389 12 C 0.419 3.581 13 O -0.470 6.470 14 N -0.375 5.375 15 C -0.025 4.025 16 C -0.171 4.171 17 C -0.158 4.158 18 C 0.057 3.943 19 H 0.096 0.904 20 C 0.007 3.993 21 H 0.104 0.896 22 C -0.184 4.184 23 C -0.193 4.193 24 C -0.029 4.029 25 O -0.292 6.292 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.852 -22.298 3.499 22.587 hybrid contribution -0.134 1.163 0.260 1.200 sum -0.986 -21.135 3.759 21.489 Atomic orbital electron populations 1.69946 1.06090 1.26959 1.50388 1.24991 0.94892 0.99384 0.94986 0.86568 0.79513 0.82626 0.78802 1.20094 1.21261 1.20102 1.21017 0.93246 0.90362 1.51374 0.92261 1.19313 0.94232 0.91051 0.97756 1.21606 0.95657 0.80346 1.00659 1.45566 1.09890 1.05114 1.78359 1.15596 0.85037 0.79531 0.77983 1.90887 1.11479 1.85980 1.58664 1.47601 1.06694 1.04222 1.79026 1.22341 0.81308 0.98340 1.00504 1.22830 0.98418 0.94568 1.01294 1.22629 0.93387 0.97095 1.02709 1.21273 0.93990 0.81290 0.97796 0.90437 1.23153 0.97273 0.84080 0.94764 0.89641 1.22940 1.02037 0.97520 0.95878 1.23149 0.99048 0.96754 1.00321 1.23548 0.97237 0.99933 0.82219 1.88864 1.87408 1.27956 1.24943 0.92810 0.95998 0.96030 0.92752 0.92786 0.77384 0.91566 0.90540 0.90410 0.89918 0.89919 0.90328 0.90879 0.90170 0.90411 0.90664 0.92281 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 10 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 11 N -0.74 -13.46 5.52 -65.22 -0.36 -13.82 16 12 C 0.72 13.05 8.31 -86.92 -0.72 12.32 16 13 O -0.59 -12.94 15.31 5.28 0.08 -12.86 16 14 N -0.63 -8.77 2.45 -168.54 -0.41 -9.18 16 15 C 0.10 1.00 6.11 -2.41 -0.01 0.98 16 16 C -0.13 -1.06 7.10 -24.46 -0.17 -1.23 16 17 C -0.12 -1.09 5.65 -24.90 -0.14 -1.23 16 18 C 0.16 2.04 2.95 -66.95 -0.20 1.84 16 19 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.07 0.87 3.08 -26.15 -0.08 0.79 16 21 H 0.09 1.41 6.91 -51.93 -0.36 1.05 16 22 C -0.15 -1.63 5.58 -25.20 -0.14 -1.77 16 23 C -0.16 -1.32 6.85 -24.73 -0.17 -1.49 16 24 C 0.05 0.44 7.72 38.21 0.29 0.73 16 25 O -0.37 -4.64 10.74 -35.23 -0.38 -5.02 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.39 6.30 6.87 -40.82 -0.28 6.02 16 32 H 0.07 0.61 7.25 -51.93 -0.38 0.24 16 33 H 0.08 0.76 7.11 -51.93 -0.37 0.39 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.67 6.03 -51.93 -0.31 0.36 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.86 5.14 -51.93 -0.27 0.59 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.56 7.74 -51.93 -0.40 0.16 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -32.25 337.57 -9.17 -41.42 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.98 Total: 2.48 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.92 Total: 0.90 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.04 Total: -48.45 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.30 Total: -17.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.25 -9.17 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368504875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.970 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds