Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00000 * 2 1 4 4 H 1.48497 * 109.46783 * 240.00145 * 3 2 1 5 5 H 1.48497 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47204 * 120.00025 * 3 2 1 7 7 C 1.37876 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46978 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46823 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00056 * 180.02562 * 11 10 9 13 13 O 1.21597 * 119.99801 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00308 * 179.97438 * 12 11 10 15 15 C 1.47417 * 125.64613 * 354.73602 * 14 12 11 16 16 C 1.55139 * 104.72032 * 155.81896 * 15 14 12 17 17 C 1.55153 * 101.48485 * 37.29483 * 16 15 14 18 18 C 1.47028 * 125.64887 * 175.04391 * 14 12 11 19 19 H 1.09007 * 109.88113 * 300.59633 * 18 14 12 20 20 C 1.53005 * 109.88240 * 61.60230 * 18 14 12 21 21 H 1.08999 * 109.87228 * 294.02674 * 20 18 14 22 22 C 1.54106 * 109.87625 * 55.03062 * 20 18 14 23 23 C 1.54812 * 104.18366 * 121.45234 * 22 20 18 24 24 C 1.54989 * 102.09403 * 20.88184 * 23 22 20 25 25 O 1.43738 * 109.87631 * 173.01750 * 20 18 14 26 26 H 0.96996 * 119.99559 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47014 * 60.00320 * 9 7 2 28 28 H 1.09000 * 109.47158 * 300.00160 * 9 7 2 29 29 H 1.09000 * 109.47188 * 299.99995 * 10 9 7 30 30 H 1.08999 * 109.47106 * 60.00231 * 10 9 7 31 31 H 0.96999 * 120.00622 * 359.97438 * 11 10 9 32 32 H 1.09005 * 110.36688 * 274.74452 * 15 14 12 33 33 H 1.08997 * 110.37021 * 37.07237 * 15 14 12 34 34 H 1.09001 * 111.18815 * 279.19055 * 16 15 14 35 35 H 1.09002 * 110.93508 * 155.29032 * 16 15 14 36 36 H 1.08999 * 110.71701 * 205.96868 * 17 16 15 37 37 H 1.08998 * 110.72064 * 82.69910 * 17 16 15 38 38 H 1.08989 * 110.48668 * 240.13118 * 22 20 18 39 39 H 1.09006 * 110.48447 * 2.78120 * 22 20 18 40 40 H 1.08997 * 110.90446 * 139.08407 * 23 22 20 41 41 H 1.09000 * 110.90550 * 262.68201 * 23 22 20 42 42 H 1.08993 * 110.61917 * 81.47556 * 24 23 22 43 43 H 1.09006 * 110.61773 * 204.47777 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 7 1.5129 -4.9307 0.0033 12 6 2.1868 -6.0979 0.0047 13 8 3.4027 -6.0979 0.0051 14 7 1.5129 -7.2652 0.0057 15 6 0.0502 -7.4127 0.1153 16 6 -0.2577 -8.7851 -0.5392 17 6 0.9616 -9.6272 -0.0794 18 6 2.1154 -8.6025 -0.0959 19 1 2.6759 -8.6868 -1.0270 20 6 3.0450 -8.8463 1.0947 21 1 3.8956 -8.1664 1.0459 22 6 2.2762 -8.6299 2.4126 23 6 2.3999 -9.9850 3.1508 24 6 3.6374 -10.6170 2.4644 25 8 3.5061 -10.2076 1.0839 26 1 -0.4849 0.8400 -0.0004 27 1 0.6242 -2.5575 -0.8880 28 1 0.6248 -2.5563 0.8920 29 1 2.8721 -3.6051 -0.8873 30 1 2.8720 -3.6035 0.8927 31 1 0.5429 -4.9308 0.0033 32 1 -0.2537 -7.4122 1.1621 33 1 -0.4534 -6.6126 -0.4272 34 1 -0.2898 -8.7051 -1.6258 35 1 -1.1880 -9.2011 -0.1525 36 1 1.1564 -10.4386 -0.7806 37 1 0.8048 -10.0152 0.9271 38 1 2.7372 -7.8336 2.9968 39 1 1.2301 -8.3996 2.2106 40 1 2.5805 -9.8331 4.2150 41 1 1.5120 -10.5970 2.9919 42 1 4.5581 -10.2219 2.8938 43 1 3.6093 -11.7035 2.5472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368504875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = -102.596425 kcal Electronic energy + Delta-G solvation = -22932.321613 eV Core-core repulsion = 19590.205489 eV Total energy + Delta-G solvation = -3342.116124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.81740 -40.22955 -38.33531 -36.58270 -34.86623 -33.03438 -32.80787 -31.83736 -30.89390 -28.06413 -26.80186 -24.68841 -23.45861 -22.95043 -22.48387 -21.67378 -20.51013 -18.96877 -18.47500 -18.04026 -17.23178 -16.99869 -16.52075 -16.36126 -16.10734 -15.76331 -15.29398 -15.02676 -14.55292 -14.35276 -14.31146 -14.09669 -13.84729 -13.45747 -13.23335 -12.93445 -12.77082 -12.54134 -12.38828 -12.30195 -12.18344 -12.14049 -12.05928 -11.68269 -11.57612 -11.49825 -11.47956 -11.20455 -10.68377 -10.60313 -10.17646 -9.51800 -8.24493 -6.34960 1.41182 1.44058 1.50101 1.54881 2.08041 2.40227 2.84683 3.10207 3.17453 3.54318 3.57383 3.71025 3.86147 3.95749 4.07172 4.18854 4.29121 4.37521 4.43802 4.46999 4.48967 4.62213 4.75882 4.81490 4.83492 4.86730 4.87687 4.97653 5.03133 5.05560 5.14018 5.16069 5.26619 5.33647 5.41074 5.50105 5.57408 5.77724 5.86731 6.06066 6.16563 6.77507 6.97647 7.34256 7.53465 8.87276 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.003365 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.657810 B = 8318.662851 C = 8759.325608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.161 3.839 11 N -0.730 5.730 12 C 0.713 3.287 13 O -0.635 6.635 14 N -0.627 5.627 15 C 0.087 3.913 16 C -0.120 4.120 17 C -0.108 4.108 18 C 0.154 3.846 19 H 0.054 0.946 20 C 0.069 3.931 21 H 0.038 0.962 22 C -0.144 4.144 23 C -0.143 4.143 24 C 0.038 3.962 25 O -0.386 6.386 26 H 0.266 0.734 27 H 0.008 0.992 28 H 0.009 0.991 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.405 0.595 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -23.888 4.318 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.011 4.011 10 C 0.037 3.963 11 N -0.385 5.385 12 C 0.415 3.585 13 O -0.517 6.517 14 N -0.366 5.366 15 C -0.035 4.035 16 C -0.158 4.158 17 C -0.146 4.146 18 C 0.050 3.950 19 H 0.072 0.928 20 C 0.010 3.990 21 H 0.056 0.944 22 C -0.182 4.182 23 C -0.181 4.181 24 C -0.038 4.038 25 O -0.305 6.305 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.241 0.759 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.305 -23.807 4.127 24.271 hybrid contribution 0.323 1.540 0.067 1.575 sum -1.982 -22.267 4.195 22.745 Atomic orbital electron populations 1.70046 1.07493 1.28097 1.50849 1.25853 0.95808 1.03014 0.94323 0.85504 0.78329 0.78139 0.79115 1.19419 1.20441 1.19347 1.21428 0.93579 0.91920 1.51805 0.92390 1.19101 0.94131 0.91504 0.96338 1.21085 0.94675 0.81066 0.99474 1.45240 1.10305 1.04234 1.78737 1.15706 0.84587 0.80440 0.77791 1.90857 1.13588 1.86808 1.60462 1.47581 1.08545 1.03258 1.77264 1.22712 0.78558 1.00196 1.02018 1.22839 0.99138 0.92501 1.01315 1.22611 0.91909 0.96170 1.03934 1.21436 0.95474 0.81612 0.96504 0.92775 1.22914 0.95986 0.83863 0.96260 0.94409 1.22896 1.01751 0.98735 0.94814 1.23142 0.99404 0.94886 1.00624 1.23813 0.97587 1.01601 0.80765 1.88847 1.87481 1.27054 1.27080 0.92480 0.97328 0.97240 0.94033 0.93910 0.75926 0.89919 0.90187 0.90324 0.86628 0.88746 0.89020 0.92955 0.89289 0.88966 0.88469 0.92857 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.88 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.38 5.09 29.85 0.15 1.53 16 10 C 0.16 7.29 5.61 86.38 0.48 7.77 16 11 N -0.73 -27.32 5.52 -478.53 -2.64 -29.96 16 12 C 0.71 26.78 8.31 179.06 1.49 28.27 16 13 O -0.64 -29.35 15.31 -4.02 -0.06 -29.41 16 14 N -0.63 -17.28 2.45 -805.41 -1.97 -19.25 16 15 C 0.09 1.58 6.11 86.94 0.53 2.11 16 16 C -0.12 -1.50 7.10 32.07 0.23 -1.27 16 17 C -0.11 -1.67 5.65 31.78 0.18 -1.49 16 18 C 0.15 3.88 2.95 45.34 0.13 4.01 16 19 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 20 C 0.07 1.86 3.08 30.97 0.10 1.95 16 21 H 0.04 1.37 6.91 -2.39 -0.02 1.35 16 22 C -0.14 -3.11 5.58 31.59 0.18 -2.94 16 23 C -0.14 -2.07 6.85 31.89 0.22 -1.85 16 24 C 0.04 0.65 7.72 72.66 0.56 1.21 16 25 O -0.39 -9.41 10.74 -148.98 -1.60 -11.01 16 26 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.40 13.01 6.87 -92.71 -0.64 12.37 16 32 H 0.08 1.29 7.25 -2.38 -0.02 1.27 16 33 H 0.08 1.43 7.11 -2.39 -0.02 1.41 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.21 6.03 -2.39 -0.01 1.20 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.73 5.14 -2.38 -0.01 1.72 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.10 1.03 7.74 -2.39 -0.02 1.01 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -72.03 337.57 1.34 -70.69 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.36 Total: 17.68 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 4.94 Total: 9.40 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.32 Total: -103.27 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.66 Total: -40.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.03 1.34 -70.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368504875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.909 kcal (2) G-P(sol) polarization free energy of solvation -72.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds