Wall clock time and date at job start Tue Mar 31 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99909 * 2 1 4 4 H 1.48503 * 109.47470 * 270.00039 * 3 2 1 5 5 H 1.48505 * 109.47431 * 29.99844 * 3 2 1 6 6 H 1.48503 * 109.47310 * 150.00003 * 3 2 1 7 7 C 1.37872 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46793 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46898 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47129 * 179.97438 * 11 10 9 13 13 C 1.34787 * 119.99908 * 179.97438 * 12 11 10 14 14 O 1.21584 * 119.99716 * 4.97067 * 13 12 11 15 15 N 1.34775 * 119.99863 * 184.96746 * 13 12 11 16 16 C 1.47063 * 120.24637 * 354.74693 * 15 13 12 17 17 C 1.53502 * 107.51901 * 229.90703 * 16 15 13 18 18 O 1.42698 * 108.51380 * 304.89859 * 17 16 15 19 19 C 1.42806 * 115.46024 * 64.24192 * 18 17 16 20 20 H 1.09005 * 111.91214 * 68.08339 * 19 18 17 21 21 C 1.55296 * 107.33881 * 191.51476 * 19 18 17 22 22 C 1.54919 * 103.87927 * 78.92571 * 21 19 18 23 23 C 1.54035 * 106.81620 * 22.93740 * 22 21 19 24 24 C 1.44883 * 120.04441 * 175.23734 * 15 13 12 25 25 H 1.09000 * 109.82570 * 13.79448 * 24 15 13 26 26 H 0.97004 * 120.00179 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46302 * 60.00602 * 9 7 2 28 28 H 1.08997 * 109.47195 * 300.00225 * 9 7 2 29 29 H 1.08998 * 109.47447 * 60.00509 * 10 9 7 30 30 H 1.08997 * 109.47430 * 300.00076 * 10 9 7 31 31 H 1.09007 * 109.46859 * 59.99961 * 11 10 9 32 32 H 1.09005 * 109.47058 * 300.00312 * 11 10 9 33 33 H 0.96996 * 120.00246 * 0.02562 * 12 11 10 34 34 H 1.08997 * 109.84719 * 110.40643 * 16 15 13 35 35 H 1.08998 * 109.91056 * 349.44245 * 16 15 13 36 36 H 1.08996 * 109.63548 * 185.18426 * 17 16 15 37 37 H 1.09001 * 109.79072 * 64.69437 * 17 16 15 38 38 H 1.08999 * 110.49247 * 197.11244 * 21 19 18 39 39 H 1.08999 * 110.49189 * 319.77460 * 21 19 18 40 40 H 1.09002 * 109.46878 * 263.82033 * 22 21 19 41 41 H 1.08991 * 110.38326 * 142.56198 * 22 21 19 42 42 H 1.08990 * 110.07949 * 241.12125 * 23 22 21 43 43 H 1.09004 * 110.07463 * 119.56424 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0019 14 8 0.7913 -7.5947 -0.0927 15 7 2.8547 -8.3943 0.0986 16 6 4.3026 -8.1370 0.0925 17 6 4.9351 -9.0792 -0.9411 18 8 4.5632 -10.4190 -0.6202 19 6 3.1676 -10.7074 -0.7117 20 1 2.8130 -10.6791 -1.7421 21 6 2.9373 -12.0942 -0.0517 22 6 2.9435 -11.7886 1.4670 23 6 2.5862 -10.2985 1.6232 24 6 2.3677 -9.7548 0.2025 25 1 1.3101 -9.7899 -0.0591 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 2.8719 -3.6044 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 0.8539 -5.0445 -0.8915 32 1 0.8533 -5.0451 0.8886 33 1 3.3859 -5.9233 -0.0014 34 1 4.7184 -8.3381 1.0798 35 1 4.4943 -7.1006 -0.1854 36 1 6.0203 -8.9827 -0.9091 37 1 4.5745 -8.8282 -1.9387 38 1 1.9719 -12.5030 -0.3498 39 1 3.7416 -12.7808 -0.3160 40 1 3.9375 -11.9789 1.8718 41 1 2.2066 -12.4054 1.9813 42 1 3.4055 -9.7658 2.1059 43 1 1.6732 -10.1921 2.2092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368985474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:37 Heat of formation + Delta-G solvation = -82.339465 kcal Electronic energy + Delta-G solvation = -22523.585701 eV Core-core repulsion = 19182.347984 eV Total energy + Delta-G solvation = -3341.237717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03817 -39.01246 -36.08197 -35.40711 -34.96734 -33.26075 -31.15860 -30.01367 -28.51819 -27.54074 -26.15658 -23.77315 -23.14085 -21.03271 -20.86390 -20.60422 -19.07002 -18.27948 -17.22644 -16.47232 -16.18264 -15.94496 -15.68543 -15.15079 -14.83911 -14.50062 -14.40237 -14.25574 -13.91004 -13.30974 -13.02976 -12.42660 -12.31402 -12.12695 -11.87467 -11.81970 -11.70636 -11.53453 -11.45605 -11.02543 -10.91281 -10.72010 -10.60788 -10.55130 -10.24364 -10.02971 -9.87836 -9.45718 -9.13694 -8.93835 -8.46611 -8.38100 -6.02694 -4.05932 2.54942 3.23599 3.29935 3.36376 3.38738 3.39059 3.88732 4.24426 4.33448 4.43462 4.56274 4.59213 4.79137 4.86845 4.94936 5.15669 5.21608 5.30013 5.32116 5.33076 5.37691 5.51429 5.58186 5.63665 5.68321 5.79116 5.80457 5.93214 6.05082 6.16288 6.36546 6.50807 6.60064 6.76777 6.91305 6.97207 7.00346 7.62655 7.75383 7.96021 7.99315 8.36772 8.66279 9.00719 9.58277 11.08612 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040455 B = 0.002816 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.963434 B = 9941.213516 C =10311.084808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.741 5.741 13 C 0.703 3.297 14 O -0.588 6.588 15 N -0.626 5.626 16 C 0.075 3.925 17 C 0.050 3.950 18 O -0.374 6.374 19 C 0.076 3.924 20 H 0.076 0.924 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.131 4.131 24 C 0.127 3.873 25 H 0.111 0.889 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.393 0.607 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.237 -23.783 0.226 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.397 5.397 13 C 0.405 3.595 14 O -0.466 6.466 15 N -0.363 5.363 16 C -0.048 4.048 17 C -0.027 4.027 18 O -0.292 6.292 19 C 0.018 3.982 20 H 0.094 0.906 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.170 4.170 24 C 0.021 3.979 25 H 0.129 0.871 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.307 -23.913 0.244 25.662 hybrid contribution 0.782 1.417 -0.052 1.620 sum 10.089 -22.496 0.192 24.655 Atomic orbital electron populations 1.69968 1.06062 1.26703 1.50529 1.25031 0.94859 0.99308 0.95277 0.86580 0.79789 0.83430 0.78094 1.20656 1.21196 1.19903 1.21200 0.92975 0.90940 1.50971 0.92662 1.19026 0.93836 0.90771 0.97706 1.21890 0.99807 0.93323 1.00779 1.21543 0.91325 0.84146 1.01944 1.45566 1.10518 1.04425 1.79163 1.15949 0.84898 0.80840 0.77817 1.90905 1.14224 1.83717 1.57735 1.46698 1.05368 1.05666 1.78615 1.22367 0.81110 1.00441 1.00929 1.22923 1.00355 0.82451 0.97018 1.87795 1.23354 1.28143 1.89920 1.23464 0.81667 0.95068 0.98031 0.90636 1.22572 1.02380 0.95031 0.95324 1.22159 1.01806 0.95667 0.95837 1.22375 1.02091 0.95743 0.96742 1.21789 1.00453 0.80162 0.95473 0.87117 0.92908 0.96224 0.96237 0.92786 0.92798 0.91838 0.91958 0.77167 0.90395 0.89200 0.87578 0.92543 0.90022 0.90105 0.91472 0.91536 0.91278 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.13 2.40 5.68 -4.04 -0.02 2.38 16 12 N -0.74 -11.10 5.46 -65.22 -0.36 -11.45 16 13 C 0.70 11.23 8.27 -86.91 -0.72 10.51 16 14 O -0.59 -11.72 15.72 5.29 0.08 -11.64 16 15 N -0.63 -7.64 2.68 -170.99 -0.46 -8.10 16 16 C 0.08 0.67 6.28 -3.47 -0.02 0.65 16 17 C 0.05 0.40 7.01 37.42 0.26 0.67 16 18 O -0.37 -3.62 10.03 -35.23 -0.35 -3.98 16 19 C 0.08 0.72 3.94 -24.80 -0.10 0.62 16 20 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.12 -0.86 6.49 -24.50 -0.16 -1.01 16 22 C -0.12 -0.90 6.74 -25.18 -0.17 -1.07 16 23 C -0.13 -1.28 6.39 -25.84 -0.17 -1.45 16 24 C 0.13 1.42 3.04 -67.73 -0.21 1.21 16 25 H 0.11 1.44 6.98 -51.93 -0.36 1.08 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.39 4.75 5.97 -40.82 -0.24 4.51 16 34 H 0.08 0.64 7.51 -51.93 -0.39 0.25 16 35 H 0.09 0.69 5.73 -51.93 -0.30 0.39 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.70 7.17 -51.93 -0.37 0.33 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -33.11 340.09 -9.36 -42.46 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.13 Total: 0.12 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.99 Total: -2.86 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.08 Total: -45.66 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.27 Total: -15.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.11 -9.36 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368985474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.876 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds