Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99652 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99915 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99586 * 180.02562 * 13 12 11 16 16 C 1.45732 * 117.56975 * 359.97438 * 15 13 12 17 17 C 1.53251 * 109.32106 * 156.06878 * 16 15 13 18 18 O 1.43189 * 107.37707 * 51.82218 * 17 16 15 19 19 C 1.42331 * 113.94844 * 289.70135 * 18 17 16 20 20 H 1.09000 * 109.51775 * 291.34428 * 19 18 17 21 21 C 1.53848 * 109.08752 * 171.50843 * 19 18 17 22 22 C 1.53740 * 106.94878 * 235.15178 * 21 19 18 23 23 C 1.54060 * 105.85282 * 19.14937 * 22 21 19 24 24 C 1.44298 * 117.56109 * 179.73597 * 15 13 12 25 25 H 1.08993 * 108.09149 * 308.31390 * 24 15 13 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 32 32 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 33 33 H 0.96993 * 120.00480 * 359.97438 * 12 11 10 34 34 H 1.09001 * 109.49860 * 276.02737 * 16 15 13 35 35 H 1.09002 * 109.49444 * 36.11655 * 16 15 13 36 36 H 1.09005 * 109.87397 * 171.29243 * 17 16 15 37 37 H 1.09003 * 109.87773 * 292.34865 * 17 16 15 38 38 H 1.08997 * 109.96640 * 354.52357 * 21 19 18 39 39 H 1.08996 * 109.96277 * 115.77957 * 21 19 18 40 40 H 1.08996 * 110.17473 * 138.25144 * 22 21 19 41 41 H 1.09006 * 110.17456 * 259.98171 * 22 21 19 42 42 H 1.08998 * 110.33091 * 90.72364 * 23 22 21 43 43 H 1.08995 * 110.33474 * 212.85840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4320 -6.1006 -0.0213 13 6 1.9827 -7.3713 -0.0269 14 8 0.7873 -7.5934 -0.0280 15 7 2.8585 -8.3958 -0.0303 16 6 4.2787 -8.0690 -0.0283 17 6 5.0689 -9.2457 0.5543 18 8 4.6681 -10.4231 -0.1552 19 6 3.3417 -10.8495 0.1357 20 1 3.2935 -11.2153 1.1614 21 6 2.9533 -11.9807 -0.8319 22 6 1.6523 -11.5484 -1.5277 23 6 1.5637 -10.0214 -1.3430 24 6 2.3200 -9.7345 -0.0304 25 1 1.5999 -9.8097 0.7843 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 0.8531 -5.0490 0.8724 32 1 0.8537 -5.0406 -0.9075 33 1 3.3857 -5.9235 -0.0201 34 1 4.6096 -7.8784 -1.0492 35 1 4.4467 -7.1808 0.5809 36 1 6.1374 -9.0774 0.4196 37 1 4.8413 -9.3563 1.6146 38 1 3.7409 -12.1246 -1.5716 39 1 2.7896 -12.9048 -0.2776 40 1 1.6926 -11.7971 -2.5881 41 1 0.7963 -12.0350 -1.0601 42 1 2.0431 -9.5105 -2.1780 43 1 0.5227 -9.7102 -1.2566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368985475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = -83.443447 kcal Electronic energy + Delta-G solvation = -22534.360013 eV Core-core repulsion = 19193.074424 eV Total energy + Delta-G solvation = -3341.285589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11435 -39.00084 -36.44286 -35.42950 -34.99212 -33.25534 -31.15968 -30.12107 -28.57834 -27.65415 -26.21197 -23.56497 -23.14111 -21.22017 -20.82435 -20.52272 -19.09687 -18.20957 -17.45715 -16.45258 -16.35728 -15.96687 -15.41699 -15.13023 -14.79558 -14.57488 -14.41270 -14.34850 -13.89185 -13.40433 -13.12776 -12.55600 -12.32136 -12.13439 -11.86755 -11.78409 -11.65264 -11.51855 -11.40333 -10.93177 -10.90379 -10.72627 -10.71156 -10.56866 -10.26539 -9.86925 -9.81819 -9.43642 -9.11503 -8.92976 -8.50619 -8.37888 -6.02334 -4.05354 2.54612 3.28350 3.29467 3.36938 3.37796 3.40419 3.90382 4.22087 4.31788 4.44087 4.44861 4.61055 4.76849 4.88709 4.92987 5.17613 5.21415 5.24358 5.31583 5.33555 5.38783 5.45844 5.62719 5.68448 5.72184 5.79159 5.81171 6.09107 6.10963 6.17818 6.44908 6.52996 6.61475 6.74913 6.85306 6.95654 7.01500 7.63656 7.76215 7.96671 8.02070 8.37530 8.69781 9.01556 9.58840 11.09018 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037501 B = 0.002877 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.464246 B = 9729.189274 C =10282.857283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.740 5.740 13 C 0.698 3.302 14 O -0.585 6.585 15 N -0.619 5.619 16 C 0.076 3.924 17 C 0.052 3.948 18 O -0.371 6.371 19 C 0.090 3.910 20 H 0.065 0.935 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.129 4.129 24 C 0.137 3.863 25 H 0.079 0.921 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.393 0.607 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.810 -23.926 0.010 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.396 5.396 13 C 0.399 3.601 14 O -0.462 6.462 15 N -0.358 5.358 16 C -0.048 4.048 17 C -0.025 4.025 18 O -0.289 6.289 19 C 0.031 3.969 20 H 0.083 0.917 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.168 4.168 24 C 0.032 3.968 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.229 0.771 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.899 -24.076 -0.109 25.668 hybrid contribution 0.777 1.348 0.208 1.570 sum 9.676 -22.727 0.099 24.701 Atomic orbital electron populations 1.69980 1.06059 1.26573 1.50639 1.25037 0.94860 0.99319 0.95297 0.86527 0.80032 0.83761 0.77604 1.19768 1.20995 1.21005 1.21241 0.93012 0.90930 1.50809 0.92609 1.19028 0.93846 0.90797 0.97701 1.21887 0.99798 0.93341 1.00780 1.21527 0.91337 0.84161 1.01917 1.45577 1.10562 1.04438 1.79048 1.16009 0.85101 0.80833 0.78202 1.90901 1.13857 1.83806 1.57639 1.46153 1.05245 1.04899 1.79484 1.22021 0.81463 0.99010 1.02285 1.22947 0.99646 0.84099 0.95788 1.87963 1.29320 1.44057 1.67597 1.22452 0.81879 0.93421 0.99121 0.91695 1.22105 0.98246 0.96449 0.98423 1.22050 0.97031 0.95950 1.00945 1.22601 1.01981 0.95231 0.96963 1.20997 0.94922 0.81148 0.99714 0.90327 0.92976 0.96243 0.96230 0.92788 0.92810 0.91940 0.91906 0.77149 0.90971 0.89804 0.87126 0.92092 0.89987 0.90489 0.91060 0.91267 0.91517 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.74 -0.14 -2.50 16 11 C 0.13 2.42 5.67 -4.04 -0.02 2.39 16 12 N -0.74 -11.17 5.37 -65.23 -0.35 -11.52 16 13 C 0.70 11.16 7.91 -86.91 -0.69 10.47 16 14 O -0.58 -11.47 14.91 5.29 0.08 -11.39 16 15 N -0.62 -7.74 2.96 -173.65 -0.51 -8.25 16 16 C 0.08 0.70 5.89 -4.33 -0.03 0.67 16 17 C 0.05 0.40 7.01 37.29 0.26 0.66 16 18 O -0.37 -3.64 10.22 -35.23 -0.36 -4.00 16 19 C 0.09 0.83 3.49 -26.73 -0.09 0.74 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 21 C -0.11 -0.88 6.60 -25.91 -0.17 -1.05 16 22 C -0.12 -1.01 6.81 -25.79 -0.18 -1.19 16 23 C -0.13 -1.49 5.69 -25.56 -0.15 -1.63 16 24 C 0.14 1.59 2.69 -68.92 -0.19 1.41 16 25 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.39 4.83 6.11 -40.82 -0.25 4.58 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.66 6.47 -51.93 -0.34 0.33 16 36 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 38 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 43 H 0.08 1.12 7.48 -51.93 -0.39 0.73 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -33.14 340.03 -9.49 -42.63 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.25 Total: 0.01 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.94 Total: -2.92 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.13 Total: -45.90 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.28 Total: -15.39 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.14 -9.49 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368985475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.815 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds