Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00181 * 2 1 4 4 H 1.48497 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47148 * 300.00098 * 3 2 1 6 6 H 1.48497 * 109.46995 * 59.99834 * 3 2 1 7 7 C 1.37884 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46792 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46953 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00172 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00180 * 179.97438 * 13 12 11 16 16 C 1.48156 * 122.64351 * 355.42882 * 15 13 12 17 17 C 1.52764 * 110.66008 * 228.43393 * 16 15 13 18 18 O 1.43898 * 111.93992 * 314.72220 * 17 16 15 19 19 C 1.41097 * 111.12888 * 58.05460 * 18 17 16 20 20 H 1.09000 * 109.83730 * 50.98641 * 19 18 17 21 21 C 1.52791 * 118.42548 * 178.17517 * 19 18 17 22 22 C 1.55471 * 102.76254 * 158.72734 * 21 19 18 23 23 C 1.55866 * 106.41940 * 335.57540 * 22 21 19 24 24 C 1.45631 * 122.64643 * 175.45334 * 15 13 12 25 25 H 1.08997 * 109.90141 * 240.82285 * 24 15 13 26 26 H 0.96995 * 120.00117 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47224 * 60.00207 * 9 7 2 28 28 H 1.08998 * 109.47256 * 299.99956 * 9 7 2 29 29 H 1.09004 * 109.46999 * 60.00605 * 10 9 7 30 30 H 1.08998 * 109.47276 * 300.00240 * 10 9 7 31 31 H 1.08993 * 109.47397 * 60.00518 * 11 10 9 32 32 H 1.09002 * 109.47075 * 299.99709 * 11 10 9 33 33 H 0.97004 * 119.99948 * 0.02562 * 12 11 10 34 34 H 1.09003 * 109.23257 * 348.72248 * 16 15 13 35 35 H 1.09000 * 109.23119 * 108.14091 * 16 15 13 36 36 H 1.09005 * 108.99255 * 75.39218 * 17 16 15 37 37 H 1.08998 * 108.99500 * 194.13544 * 17 16 15 38 38 H 1.09000 * 110.75587 * 277.04483 * 21 19 18 39 39 H 1.09000 * 110.74834 * 40.40846 * 21 19 18 40 40 H 1.09002 * 110.09060 * 95.25241 * 22 21 19 41 41 H 1.09005 * 110.08890 * 216.77678 * 22 21 19 42 42 H 1.09000 * 110.73658 * 237.73656 * 23 22 21 43 43 H 1.09007 * 110.22963 * 115.36133 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1007 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7876 -7.5935 -0.0003 15 7 2.8588 -8.3958 0.0007 16 6 4.3233 -8.1951 -0.0988 17 6 4.9226 -9.1160 -1.1602 18 8 4.4166 -10.4589 -1.0547 19 6 3.0107 -10.4833 -1.1712 20 1 2.7038 -9.9355 -2.0621 21 6 2.3004 -11.8353 -1.1251 22 6 0.8493 -11.4475 -0.7240 23 6 0.9486 -10.0837 0.0243 24 6 2.4402 -9.7872 0.0980 25 1 2.8651 -10.2407 0.9934 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8906 30 1 2.8720 -3.6044 -0.8894 31 1 0.8540 -5.0446 -0.8903 32 1 0.8533 -5.0451 0.8897 33 1 3.3859 -5.9234 0.0016 34 1 4.5263 -7.1583 -0.3670 35 1 4.7819 -8.4128 0.8658 36 1 4.6822 -8.7225 -2.1480 37 1 6.0060 -9.1357 -1.0421 38 1 2.3157 -12.3132 -2.1047 39 1 2.7498 -12.4821 -0.3716 40 1 0.2285 -11.3484 -1.6144 41 1 0.4306 -12.2021 -0.0580 42 1 0.5288 -10.1623 1.0271 43 1 0.4360 -9.3054 -0.5411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368985476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -72.762296 kcal Electronic energy + Delta-G solvation = -22576.093396 eV Core-core repulsion = 19235.270976 eV Total energy + Delta-G solvation = -3340.822420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07463 -38.95577 -36.52281 -35.36316 -34.89403 -33.25455 -31.16018 -30.00819 -28.41641 -27.41738 -26.05067 -23.38333 -23.14563 -21.48690 -20.95622 -20.63688 -19.56663 -17.55899 -16.99349 -16.64563 -16.20826 -15.94323 -15.35717 -15.27187 -14.93837 -14.64770 -14.44549 -13.89145 -13.77117 -13.58138 -13.12100 -12.72779 -12.30623 -12.04197 -11.85844 -11.79448 -11.71635 -11.54040 -11.26493 -10.98828 -10.93522 -10.72714 -10.69753 -10.56599 -10.35349 -9.88767 -9.60708 -9.28947 -9.11891 -8.89419 -8.43350 -8.38910 -6.03341 -4.06447 2.54193 3.24059 3.28679 3.28731 3.36277 3.39576 3.85871 4.28221 4.42629 4.44445 4.55251 4.66781 4.75402 4.84032 5.05262 5.16559 5.20795 5.23419 5.32551 5.32881 5.42034 5.49347 5.63497 5.65694 5.77882 5.79021 5.81315 6.08056 6.13369 6.15911 6.40382 6.59605 6.64868 6.78219 6.81419 6.99366 7.01419 7.62339 7.74802 7.95509 8.00789 8.36400 8.69374 9.00437 9.57828 11.08001 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035188 B = 0.002935 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.528089 B = 9538.994734 C =10159.841961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.741 5.741 13 C 0.710 3.290 14 O -0.581 6.581 15 N -0.632 5.632 16 C 0.079 3.921 17 C 0.049 3.951 18 O -0.365 6.365 19 C 0.061 3.939 20 H 0.066 0.934 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.134 4.134 24 C 0.125 3.875 25 H 0.077 0.923 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.391 0.609 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 -23.060 -1.683 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.397 5.397 13 C 0.412 3.588 14 O -0.460 6.460 15 N -0.371 5.371 16 C -0.044 4.044 17 C -0.029 4.029 18 O -0.283 6.283 19 C 0.002 3.998 20 H 0.084 0.916 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.171 4.171 24 C 0.020 3.980 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.924 -23.195 -1.644 24.566 hybrid contribution 0.945 1.387 0.048 1.679 sum 8.869 -21.807 -1.596 23.596 Atomic orbital electron populations 1.69972 1.06058 1.26595 1.50606 1.25034 0.94858 0.99316 0.95280 0.86528 0.80031 0.83764 0.77615 1.19771 1.20992 1.20992 1.21237 0.93008 0.90932 1.50858 0.92620 1.19027 0.93837 0.90790 0.97702 1.21892 0.99806 0.93361 1.00762 1.21531 0.91306 0.84120 1.01938 1.45603 1.10476 1.04534 1.79081 1.15901 0.84714 0.80440 0.77743 1.90806 1.13812 1.83021 1.58317 1.47157 1.05477 1.05520 1.78929 1.22310 0.80793 1.00764 1.00540 1.22959 0.99313 0.82571 0.98050 1.87901 1.20426 1.26262 1.93702 1.22999 0.81425 0.97920 0.97451 0.91605 1.22063 0.95045 0.95069 1.02569 1.22693 0.95385 0.97327 1.00552 1.22545 0.94096 0.97905 1.02559 1.22055 0.97603 0.79949 0.98358 0.90483 0.92963 0.96245 0.96222 0.92794 0.92836 0.91903 0.91870 0.77370 0.89172 0.90643 0.92424 0.87421 0.90652 0.90428 0.91170 0.91217 0.91186 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.38 5.67 -4.04 -0.02 2.36 16 12 N -0.74 -10.94 5.47 -65.22 -0.36 -11.29 16 13 C 0.71 11.07 8.36 -86.92 -0.73 10.34 16 14 O -0.58 -10.92 13.07 5.29 0.07 -10.85 16 15 N -0.63 -7.76 2.97 -170.09 -0.50 -8.26 16 16 C 0.08 0.69 6.48 -3.25 -0.02 0.67 16 17 C 0.05 0.39 6.80 37.04 0.25 0.64 16 18 O -0.36 -3.76 10.85 -34.89 -0.38 -4.14 16 19 C 0.06 0.63 2.98 -25.46 -0.08 0.55 16 20 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 21 C -0.11 -0.91 6.77 -25.53 -0.17 -1.09 16 22 C -0.12 -1.06 6.90 -23.89 -0.16 -1.22 16 23 C -0.13 -1.57 5.59 -25.58 -0.14 -1.72 16 24 C 0.13 1.44 3.13 -67.40 -0.21 1.23 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.39 4.69 6.23 -40.82 -0.25 4.44 16 34 H 0.09 0.67 6.02 -51.93 -0.31 0.35 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.12 1.73 5.41 -51.93 -0.28 1.45 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -32.47 337.80 -9.49 -41.95 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.14 Total: 0.69 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.98 Total: -3.55 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.13 Total: -45.57 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.31 Total: -14.99 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.47 -9.49 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368985476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.808 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds