Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48504 * 109.47233 * 240.00041 * 3 2 1 5 5 H 1.48496 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99869 * 3 2 1 7 7 C 1.37872 * 120.00657 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00742 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46988 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46928 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99953 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00097 * 180.27545 * 13 12 11 16 16 C 1.48094 * 122.62805 * 359.73199 * 15 13 12 17 17 C 1.52768 * 110.76255 * 131.16316 * 16 15 13 18 18 O 1.43964 * 111.84114 * 45.31589 * 17 16 15 19 19 C 1.40824 * 111.21697 * 302.42905 * 18 17 16 20 20 H 1.08996 * 109.03072 * 311.05542 * 19 18 17 21 21 C 1.51973 * 119.44195 * 184.87881 * 19 18 17 22 22 C 1.55074 * 105.14710 * 210.92747 * 21 19 18 23 23 C 1.55440 * 106.29823 * 3.77417 * 22 21 19 24 24 C 1.45870 * 122.63143 * 179.43979 * 15 13 12 25 25 H 1.08989 * 110.79889 * 117.59720 * 24 15 13 26 26 H 0.96990 * 120.00229 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47477 * 59.99648 * 9 7 2 28 28 H 1.08997 * 109.47150 * 299.99542 * 9 7 2 29 29 H 1.09007 * 109.47300 * 60.00253 * 10 9 7 30 30 H 1.08997 * 109.47600 * 299.99716 * 10 9 7 31 31 H 1.08998 * 109.47202 * 60.00203 * 11 10 9 32 32 H 1.08997 * 109.47419 * 300.00101 * 11 10 9 33 33 H 0.97000 * 120.00410 * 0.02562 * 12 11 10 34 34 H 1.08999 * 109.22017 * 251.49617 * 16 15 13 35 35 H 1.08999 * 109.21912 * 10.87693 * 16 15 13 36 36 H 1.08998 * 109.00555 * 165.92043 * 17 16 15 37 37 H 1.08997 * 109.00841 * 284.78385 * 17 16 15 38 38 H 1.08998 * 110.30736 * 329.84332 * 21 19 18 39 39 H 1.09000 * 110.30454 * 91.91204 * 21 19 18 40 40 H 1.09001 * 110.09070 * 122.98093 * 22 21 19 41 41 H 1.09000 * 110.09033 * 244.56435 * 22 21 19 42 42 H 1.08992 * 110.74054 * 142.51088 * 23 22 21 43 43 H 1.09004 * 110.73446 * 265.64990 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6619 0.0005 11 6 1.4806 -4.9870 0.0012 12 7 2.4327 -6.1005 0.0006 13 6 1.9835 -7.3712 0.0015 14 8 0.7881 -7.5934 0.0024 15 7 2.8594 -8.3955 0.0065 16 6 4.3263 -8.1919 0.0054 17 6 4.9920 -9.0434 1.0850 18 8 4.4836 -10.3902 1.0942 19 6 3.0884 -10.4070 1.2850 20 1 2.8380 -9.7698 2.1331 21 6 2.3713 -11.7381 1.4373 22 6 0.9575 -11.5070 0.8434 23 6 0.9529 -10.0587 0.2790 24 6 2.4369 -9.7916 0.0198 25 1 2.7729 -10.3063 -0.8802 26 1 -0.4850 0.8399 -0.0004 27 1 0.6249 -2.5571 -0.8896 28 1 0.6243 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8906 30 1 2.8722 -3.6042 -0.8894 31 1 0.8537 -5.0451 -0.8886 32 1 0.8542 -5.0446 0.8913 33 1 3.3864 -5.9232 0.0002 34 1 4.7265 -8.4710 -0.9693 35 1 4.5427 -7.1405 0.1943 36 1 6.0664 -9.0708 0.9031 37 1 4.8086 -8.5892 2.0587 38 1 2.8936 -12.5153 0.8793 39 1 2.3009 -12.0116 2.4901 40 1 0.7664 -12.2215 0.0427 41 1 0.2028 -11.6074 1.6234 42 1 0.3799 -10.0071 -0.6467 43 1 0.5577 -9.3589 1.0154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368985477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = -75.210305 kcal Electronic energy + Delta-G solvation = -22581.653076 eV Core-core repulsion = 19240.724503 eV Total energy + Delta-G solvation = -3340.928573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09747 -38.96583 -36.57472 -35.36634 -34.87953 -33.24740 -31.15214 -30.02126 -28.43541 -27.44121 -26.06820 -23.40447 -23.15478 -21.59172 -20.80075 -20.53967 -19.59353 -17.69046 -16.98464 -16.64688 -16.22581 -15.93825 -15.30133 -15.23630 -14.90282 -14.66616 -14.44672 -13.99076 -13.74887 -13.54444 -13.12749 -12.74481 -12.28735 -12.05682 -11.86928 -11.78605 -11.71942 -11.50355 -11.27337 -10.92390 -10.89414 -10.73700 -10.68993 -10.61817 -10.31997 -9.87788 -9.71028 -9.39352 -9.14700 -8.88031 -8.44006 -8.38015 -6.02725 -4.06110 2.54212 3.24534 3.28495 3.30961 3.35895 3.37582 3.86306 4.27243 4.42656 4.43835 4.56367 4.66612 4.73134 4.83770 5.04268 5.13325 5.19672 5.23338 5.30986 5.32885 5.42512 5.50841 5.63528 5.66974 5.76181 5.78918 5.80201 6.09834 6.12284 6.16230 6.40218 6.54648 6.59977 6.78864 6.79582 6.99108 7.01428 7.62181 7.75180 7.95855 8.01912 8.36647 8.69956 9.00347 9.58061 11.08544 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034758 B = 0.002943 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.368216 B = 9512.446288 C =10124.140067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.709 3.291 14 O -0.582 6.582 15 N -0.632 5.632 16 C 0.079 3.921 17 C 0.049 3.951 18 O -0.364 6.364 19 C 0.063 3.937 20 H 0.059 0.941 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.109 4.109 24 C 0.122 3.878 25 H 0.083 0.917 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.391 0.609 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -23.104 1.799 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.398 5.398 13 C 0.411 3.589 14 O -0.459 6.459 15 N -0.371 5.371 16 C -0.045 4.045 17 C -0.029 4.029 18 O -0.282 6.282 19 C 0.003 3.997 20 H 0.077 0.923 21 C -0.147 4.147 22 C -0.163 4.163 23 C -0.147 4.147 24 C 0.017 3.983 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.030 -23.235 1.771 24.647 hybrid contribution 0.959 1.414 -0.032 1.709 sum 8.989 -21.821 1.739 23.664 Atomic orbital electron populations 1.69952 1.06057 1.26828 1.50422 1.25026 0.94857 0.99286 0.95255 0.86642 0.79564 0.83105 0.78576 1.20244 1.21253 1.20252 1.21164 0.92939 0.90965 1.51127 0.92720 1.19016 0.93823 0.90753 0.97693 1.21893 0.99811 0.93370 1.00750 1.21525 0.91293 0.84112 1.01920 1.45572 1.10446 1.04501 1.79244 1.15853 0.84772 0.80443 0.77877 1.90905 1.13619 1.83386 1.58032 1.47238 1.05118 1.05277 1.79516 1.22287 0.80696 1.01025 1.00464 1.23002 0.98945 0.82681 0.98225 1.87830 1.21141 1.25950 1.93309 1.22587 0.81658 0.98233 0.97194 0.92293 1.21760 0.95295 0.95605 1.02021 1.22604 0.95743 0.97386 1.00570 1.22293 0.93682 0.95488 1.03226 1.22216 0.97301 0.80252 0.98495 0.89910 0.92843 0.96241 0.96245 0.92844 0.92799 0.91892 0.91928 0.77386 0.90617 0.89219 0.87359 0.92398 0.90529 0.90697 0.91177 0.91004 0.90570 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.40 5.67 -4.04 -0.02 2.38 16 12 N -0.74 -11.01 5.49 -65.22 -0.36 -11.37 16 13 C 0.71 11.12 8.33 -86.92 -0.72 10.40 16 14 O -0.58 -11.03 13.38 5.28 0.07 -10.96 16 15 N -0.63 -7.78 2.97 -169.88 -0.50 -8.29 16 16 C 0.08 0.69 6.53 -3.28 -0.02 0.67 16 17 C 0.05 0.39 6.80 37.04 0.25 0.64 16 18 O -0.36 -3.74 10.87 -34.58 -0.38 -4.12 16 19 C 0.06 0.64 2.84 -26.17 -0.07 0.57 16 20 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 21 C -0.11 -0.90 6.77 -26.16 -0.18 -1.07 16 22 C -0.12 -1.05 6.89 -24.34 -0.17 -1.22 16 23 C -0.11 -1.28 4.83 -25.44 -0.12 -1.40 16 24 C 0.12 1.39 3.30 -67.19 -0.22 1.17 16 25 H 0.08 0.91 8.14 -51.94 -0.42 0.49 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.39 4.72 6.15 -40.82 -0.25 4.47 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.67 5.89 -51.93 -0.31 0.36 16 36 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.46 8.06 -51.93 -0.42 0.04 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 43 H 0.09 1.33 6.52 -51.93 -0.34 0.99 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -32.63 338.17 -9.51 -42.14 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.18 Total: 0.40 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.97 Total: -3.23 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.13 Total: -45.73 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.31 Total: -15.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.63 -9.51 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368985477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.067 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds