Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48497 * 109.47461 * 240.00115 * 3 2 1 5 5 H 1.48495 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47144 * 120.00026 * 3 2 1 7 7 C 1.37873 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00612 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47143 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46954 * 180.02562 * 10 9 7 12 12 C 1.34783 * 120.00246 * 179.97438 * 11 10 9 13 13 O 1.21592 * 119.99768 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00238 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99862 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.87769 * 33.97460 * 15 14 12 17 17 C 1.53687 * 109.88408 * 272.86931 * 15 14 12 18 18 C 1.52581 * 111.48242 * 182.22981 * 17 15 14 19 19 C 1.53781 * 111.31976 * 54.91446 * 18 17 15 20 20 C 1.51309 * 107.41614 * 302.82469 * 19 18 17 21 21 H 1.08999 * 109.47224 * 306.35211 * 20 19 18 22 22 O 1.41426 * 117.74816 * 182.11899 * 20 19 18 23 23 C 1.44528 * 108.19195 * 209.10797 * 22 20 19 24 24 C 1.57891 * 107.56285 * 6.12614 * 23 22 20 25 25 C 1.52008 * 109.88671 * 155.00359 * 15 14 12 26 26 H 1.09002 * 111.31563 * 61.96727 * 25 15 14 27 27 H 0.96994 * 120.00053 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47053 * 59.99765 * 9 7 2 29 29 H 1.08995 * 109.47168 * 299.99857 * 9 7 2 30 30 H 1.08996 * 109.47221 * 60.00180 * 10 9 7 31 31 H 1.09002 * 109.47365 * 299.99820 * 10 9 7 32 32 H 0.97004 * 120.00239 * 0.02562 * 11 10 9 33 33 H 0.96995 * 120.00152 * 0.02562 * 14 12 11 34 34 H 1.08995 * 109.07901 * 302.75308 * 17 15 14 35 35 H 1.09006 * 109.07131 * 61.78421 * 17 15 14 36 36 H 1.08998 * 109.10759 * 175.38657 * 18 17 15 37 37 H 1.08999 * 109.11511 * 294.43541 * 18 17 15 38 38 H 1.09007 * 109.86600 * 62.30234 * 19 18 17 39 39 H 1.08998 * 109.87099 * 183.27042 * 19 18 17 40 40 H 1.09002 * 109.86560 * 125.47536 * 23 22 20 41 41 H 1.08997 * 109.87070 * 246.45249 * 23 22 20 42 42 H 1.09002 * 111.11000 * 263.96400 * 24 23 22 43 43 H 1.08997 * 112.11247 * 139.12251 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9307 -0.0024 12 6 2.1868 -6.0980 -0.0041 13 8 3.4027 -6.0980 -0.0046 14 7 1.5129 -7.2652 -0.0042 15 6 2.2454 -8.5339 -0.0054 16 1 3.1674 -8.4301 0.5667 17 6 2.5683 -8.9497 -1.4493 18 6 3.2844 -10.2961 -1.4962 19 6 2.4791 -11.3835 -0.7656 20 6 2.2620 -10.9089 0.6547 21 1 3.2218 -10.6508 1.1022 22 8 1.5768 -11.7729 1.5402 23 6 0.8885 -10.9624 2.5190 24 6 1.0614 -9.4518 2.0932 25 6 1.3825 -9.6298 0.5988 26 1 0.4772 -9.7894 0.0131 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.8727 -3.6047 0.8877 31 1 2.8713 -3.6039 -0.8923 32 1 0.5428 -4.9308 -0.0024 33 1 0.5429 -7.2652 -0.0034 34 1 1.6398 -9.0200 -2.0159 35 1 3.2063 -8.1918 -1.9040 36 1 3.4210 -10.5916 -2.5365 37 1 4.2616 -10.1974 -1.0234 38 1 1.5179 -11.5272 -1.2592 39 1 3.0376 -12.3195 -0.7633 40 1 -0.1704 -11.2205 2.5351 41 1 1.3239 -11.1231 3.5052 42 1 1.8949 -8.9881 2.6208 43 1 0.1445 -8.8790 2.2318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373283639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -97.572929 kcal Electronic energy + Delta-G solvation = -22378.442499 eV Core-core repulsion = 19036.544210 eV Total energy + Delta-G solvation = -3341.898289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90397 -39.35249 -36.77395 -34.83028 -34.08534 -32.84046 -32.01458 -29.88570 -29.25184 -28.09120 -24.73499 -23.22690 -22.45953 -21.50099 -20.91676 -20.63740 -20.35563 -18.07222 -16.87118 -16.34409 -16.17756 -15.53195 -15.32074 -15.09512 -14.85420 -14.51360 -14.14666 -14.04823 -13.73375 -13.48146 -13.23510 -12.96764 -12.50956 -12.27185 -12.14183 -11.69860 -11.47833 -11.19983 -11.17468 -11.03784 -10.95835 -10.82321 -10.65766 -10.60609 -10.30793 -9.93342 -9.76869 -9.54501 -9.27387 -9.01549 -8.48616 -8.25573 -6.09412 -4.12147 2.98478 3.31280 3.35014 3.36343 3.38809 3.57403 4.16250 4.31759 4.36508 4.41697 4.61702 4.71899 4.80180 4.94224 4.96615 5.02627 5.07710 5.13081 5.22923 5.27655 5.41372 5.48363 5.57543 5.66885 5.71599 5.79824 5.85787 5.89060 6.04386 6.14132 6.30604 6.39546 6.62567 6.70142 6.77566 7.00021 7.24113 7.56468 7.63000 7.89679 8.25748 8.43626 8.92517 9.00093 9.52612 11.02244 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035651 B = 0.002846 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.199397 B = 9837.418858 C =10273.923533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.747 5.747 15 C 0.180 3.820 16 H 0.092 0.908 17 C -0.135 4.135 18 C -0.112 4.112 19 C -0.112 4.112 20 C 0.084 3.916 21 H 0.062 0.938 22 O -0.374 6.374 23 C 0.049 3.951 24 C -0.145 4.145 25 C -0.136 4.136 26 H 0.093 0.907 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.393 0.607 33 H 0.393 0.607 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 -23.337 0.690 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.477 6.477 14 N -0.403 5.403 15 C 0.074 3.926 16 H 0.110 0.890 17 C -0.174 4.174 18 C -0.150 4.150 19 C -0.149 4.149 20 C 0.025 3.975 21 H 0.080 0.920 22 O -0.293 6.293 23 C -0.028 4.028 24 C -0.183 4.183 25 C -0.155 4.155 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.717 -23.379 0.687 23.400 hybrid contribution -0.620 1.233 0.031 1.380 sum 0.097 -22.146 0.718 22.158 Atomic orbital electron populations 1.69944 1.06093 1.26974 1.50383 1.24992 0.94893 0.99397 0.94991 0.86567 0.79513 0.82630 0.78797 1.20097 1.21258 1.20103 1.21022 0.93242 0.90389 1.51378 0.92271 1.19316 0.94241 0.91081 0.97762 1.21582 0.95624 0.80441 1.00603 1.45547 1.09823 1.05357 1.78490 1.16084 0.85680 0.80500 0.77879 1.90886 1.11744 1.86624 1.58402 1.45146 1.09253 1.04407 1.81462 1.20536 0.95119 0.80930 0.95967 0.89025 1.22030 1.01250 0.97119 0.97018 1.21467 0.99105 0.93646 1.00826 1.21430 1.01391 0.99101 0.92998 1.22286 0.95285 0.88317 0.91586 0.92038 1.88276 1.67420 1.31264 1.42353 1.23994 0.97177 0.89504 0.92086 1.23358 1.03467 0.96151 0.95328 1.23046 0.99564 0.96283 0.96654 0.88856 0.92802 0.96011 0.96008 0.92823 0.92825 0.77441 0.77345 0.91822 0.90744 0.90935 0.91497 0.91015 0.90867 0.90815 0.91257 0.90098 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 11 N -0.74 -12.87 5.56 -65.23 -0.36 -13.24 16 12 C 0.70 11.90 8.56 -86.91 -0.74 11.16 16 13 O -0.60 -12.58 16.00 5.29 0.08 -12.49 16 14 N -0.75 -9.03 5.02 -58.82 -0.30 -9.33 16 15 C 0.18 1.96 2.10 -68.08 -0.14 1.81 16 16 H 0.09 1.20 7.39 -51.93 -0.38 0.82 16 17 C -0.14 -1.37 5.46 -26.59 -0.15 -1.51 16 18 C -0.11 -0.92 5.85 -26.54 -0.16 -1.08 16 19 C -0.11 -0.89 5.97 -27.18 -0.16 -1.05 16 20 C 0.08 0.77 2.79 -26.35 -0.07 0.70 16 21 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 22 O -0.37 -3.90 11.35 -35.12 -0.40 -4.30 16 23 C 0.05 0.40 7.89 39.84 0.31 0.71 16 24 C -0.15 -1.19 6.72 -23.59 -0.16 -1.35 16 25 C -0.14 -1.18 2.20 -89.42 -0.20 -1.38 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.39 5.86 8.49 -40.82 -0.35 5.51 16 33 H 0.39 3.73 8.63 -40.82 -0.35 3.38 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -32.21 345.40 -9.46 -41.67 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.37 Total: 3.55 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.04 Total: -2.05 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.08 Total: -47.94 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.31 Total: -16.80 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.21 -9.46 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373283639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.903 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds