Wall clock time and date at job start Tue Mar 31 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00528 * 2 1 4 4 H 1.48501 * 109.47181 * 270.00431 * 3 2 1 5 5 H 1.48503 * 109.46807 * 30.00025 * 3 2 1 6 6 H 1.48501 * 109.47385 * 149.99865 * 3 2 1 7 7 C 1.37888 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99427 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47129 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47227 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99725 * 180.02562 * 12 11 10 14 14 O 1.21581 * 120.00271 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99872 * 179.97438 * 13 12 11 16 16 C 1.47430 * 125.64649 * 0.02562 * 15 13 12 17 17 C 1.54905 * 104.83305 * 204.09167 * 16 15 13 18 18 C 1.55161 * 101.58347 * 322.99724 * 17 16 15 19 19 O 1.42909 * 110.71618 * 276.95561 * 18 17 16 20 20 C 1.52998 * 110.72305 * 153.86671 * 18 17 16 21 21 C 1.52998 * 117.50371 * 134.00628 * 20 18 17 22 22 C 1.52994 * 117.50393 * 65.34475 * 20 18 17 23 23 C 1.47023 * 125.65020 * 179.71342 * 15 13 12 24 24 H 0.97006 * 119.99691 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46903 * 60.00279 * 9 7 2 26 26 H 1.08998 * 109.47464 * 300.00206 * 9 7 2 27 27 H 1.09005 * 109.47151 * 60.00625 * 10 9 7 28 28 H 1.08999 * 109.47766 * 299.99993 * 10 9 7 29 29 H 1.08997 * 109.46883 * 59.99864 * 11 10 9 30 30 H 1.09002 * 109.47177 * 300.00483 * 11 10 9 31 31 H 0.97005 * 119.99656 * 0.27186 * 12 11 10 32 32 H 1.08998 * 110.36901 * 322.93736 * 16 15 13 33 33 H 1.09000 * 110.36436 * 85.25730 * 16 15 13 34 34 H 1.09002 * 110.99971 * 81.06452 * 17 16 15 35 35 H 1.09000 * 111.00923 * 204.88236 * 17 16 15 36 36 H 0.96702 * 113.99707 * 59.30070 * 19 18 17 37 37 H 1.09003 * 115.54423 * 279.67667 * 20 18 17 38 38 H 1.09000 * 117.49435 * 359.97438 * 21 20 18 39 39 H 1.08996 * 117.49776 * 145.01383 * 21 20 18 40 40 H 1.09002 * 117.50130 * 214.98841 * 22 20 18 41 41 H 1.09007 * 117.49925 * 359.97438 * 22 20 18 42 42 H 1.09001 * 109.88170 * 298.39131 * 23 15 13 43 43 H 1.09004 * 109.88130 * 59.55887 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 7 2.4319 -6.1008 -0.0006 13 6 1.9826 -7.3714 -0.0015 14 8 0.7872 -7.5935 -0.0024 15 7 2.8583 -8.3958 -0.0014 16 6 4.3273 -8.2705 0.0001 17 6 4.8393 -9.5983 -0.6117 18 6 3.8282 -10.6205 -0.0282 19 8 4.2116 -11.0139 1.2911 20 6 3.7057 -11.8422 -0.9410 21 6 3.7444 -13.2227 -0.2827 22 6 4.9406 -12.7310 -1.1014 23 6 2.5070 -9.8235 0.0036 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 2.8717 -3.6045 0.8895 28 1 2.8718 -3.6045 -0.8905 29 1 0.8536 -5.0446 -0.8914 30 1 0.8529 -5.0452 0.8885 31 1 3.3856 -5.9235 0.0041 32 1 4.6366 -7.4253 -0.6148 33 1 4.6970 -8.1548 1.0189 34 1 4.7853 -9.5733 -1.7001 35 1 5.8536 -9.8170 -0.2778 36 1 4.2673 -10.2810 1.9195 37 1 3.0595 -11.7168 -1.8098 38 1 3.8576 -13.2606 0.8007 39 1 3.1240 -14.0057 -0.7186 40 1 5.1067 -13.1907 -2.0757 41 1 5.8406 -12.4452 -0.5570 42 1 1.9480 -10.0645 0.9078 43 1 1.9114 -10.0617 -0.8777 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375745958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:15 Heat of formation + Delta-G solvation = -62.045822 kcal Electronic energy + Delta-G solvation = -21911.672207 eV Core-core repulsion = 18571.314489 eV Total energy + Delta-G solvation = -3340.357718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73342 -39.08842 -36.56896 -35.43457 -35.16816 -33.30564 -31.47522 -30.56297 -29.19459 -26.68027 -24.33728 -23.06765 -22.66369 -22.29934 -20.62761 -20.43848 -19.72855 -18.24577 -16.92607 -16.74838 -16.29568 -15.80708 -15.71132 -15.19710 -14.65115 -14.51570 -14.34006 -14.01381 -13.53103 -13.18395 -13.05588 -12.74651 -12.49555 -12.28972 -11.82775 -11.80297 -11.73272 -11.69579 -11.43702 -11.01295 -10.91062 -10.73081 -10.60039 -10.58135 -10.13162 -10.02535 -9.87175 -9.45450 -9.13338 -9.00574 -8.53334 -8.37776 -6.02332 -4.05456 2.54625 3.28351 3.30164 3.33879 3.36555 3.39203 3.71034 4.00161 4.09952 4.14872 4.30876 4.43940 4.60048 4.73597 4.80041 4.88526 5.01173 5.18665 5.33403 5.34975 5.40409 5.44791 5.55456 5.57784 5.68401 5.71752 5.80006 5.80840 5.93329 6.03251 6.17086 6.50791 6.60798 6.80399 7.00352 7.04409 7.19451 7.63189 7.75939 7.96463 8.03449 8.37280 8.69221 9.01169 9.58601 11.08959 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046738 B = 0.002479 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.942125 B =11292.446161 C =11627.629345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.738 5.738 13 C 0.718 3.282 14 O -0.588 6.588 15 N -0.643 5.643 16 C 0.093 3.907 17 C -0.153 4.153 18 C 0.155 3.845 19 O -0.548 6.548 20 C -0.144 4.144 21 C -0.164 4.164 22 C -0.169 4.169 23 C 0.104 3.896 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.393 0.607 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.381 0.619 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.396 -24.690 -0.858 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.393 5.393 13 C 0.420 3.580 14 O -0.465 6.465 15 N -0.383 5.383 16 C -0.031 4.031 17 C -0.191 4.191 18 C 0.113 3.887 19 O -0.354 6.354 20 C -0.163 4.163 21 C -0.201 4.201 22 C -0.206 4.206 23 C -0.020 4.020 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.229 0.771 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.264 -25.212 -1.131 27.637 hybrid contribution 0.874 1.732 0.200 1.950 sum 12.138 -23.480 -0.931 26.448 Atomic orbital electron populations 1.69967 1.06058 1.26691 1.50509 1.25038 0.94867 0.99315 0.95294 0.86576 0.79781 0.83428 0.78086 1.20662 1.21202 1.19914 1.21197 0.92967 0.90930 1.50972 0.92666 1.19027 0.93848 0.90778 0.97721 1.21890 0.99795 0.93290 1.00794 1.21545 0.91296 0.84077 1.01967 1.45409 1.10511 1.04214 1.79161 1.15509 0.84269 0.80156 0.78054 1.90932 1.13669 1.83735 1.58200 1.47574 1.05656 1.05380 1.79702 1.22333 0.80800 0.99006 1.00923 1.23426 0.99819 0.93697 1.02195 1.21453 0.91915 0.92110 0.83186 1.86493 1.91095 1.38351 1.19482 1.22082 1.03325 0.90337 1.00514 1.22908 1.01080 0.95476 1.00612 1.22922 0.92843 1.03148 1.01730 1.22441 0.96848 0.79302 1.03411 0.92914 0.96223 0.96220 0.92778 0.92794 0.91880 0.91892 0.77324 0.90256 0.91396 0.89260 0.88935 0.77091 0.86391 0.87561 0.88990 0.88800 0.88530 0.90631 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.13 2.43 5.67 -4.04 -0.02 2.41 16 12 N -0.74 -11.10 5.52 -65.22 -0.36 -11.46 16 13 C 0.72 11.54 8.49 -86.92 -0.74 10.80 16 14 O -0.59 -12.03 16.67 5.29 0.09 -11.94 16 15 N -0.64 -7.47 3.33 -176.23 -0.59 -8.06 16 16 C 0.09 0.71 6.31 -2.53 -0.02 0.70 16 17 C -0.15 -0.98 6.09 -24.58 -0.15 -1.13 16 18 C 0.15 1.18 1.10 -88.78 -0.10 1.08 16 19 O -0.55 -4.16 11.60 -35.23 -0.41 -4.57 16 20 C -0.14 -1.04 5.12 -90.62 -0.46 -1.50 16 21 C -0.16 -1.16 9.90 -26.70 -0.26 -1.43 16 22 C -0.17 -1.08 10.01 -26.70 -0.27 -1.34 16 23 C 0.10 1.07 6.19 -3.06 -0.02 1.05 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.39 4.79 6.95 -40.82 -0.28 4.50 16 32 H 0.08 0.58 7.30 -51.93 -0.38 0.20 16 33 H 0.07 0.43 7.99 -51.93 -0.41 0.02 16 34 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.38 2.05 8.62 45.56 0.39 2.44 16 37 H 0.12 0.80 7.85 -51.93 -0.41 0.39 16 38 H 0.11 0.86 7.16 -51.93 -0.37 0.49 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.08 0.84 7.63 -51.93 -0.40 0.44 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -33.72 352.04 -9.44 -43.17 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.47 Total: 2.00 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.73 Total: -4.77 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.21 Total: -45.63 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.32 Total: -16.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.72 -9.44 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375745958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.880 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds