Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48498 * 109.47295 * 240.00415 * 3 2 1 5 5 H 1.48500 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47226 * 120.00063 * 3 2 1 7 7 C 1.37879 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00030 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47530 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47034 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46842 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00066 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00074 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00038 * 179.97438 * 13 12 11 16 16 C 1.47015 * 125.65017 * 0.04699 * 15 13 12 17 17 C 1.54321 * 107.27461 * 181.02023 * 16 15 13 18 18 C 1.55158 * 102.94120 * 22.19285 * 17 16 15 19 19 O 1.42897 * 111.03738 * 82.58720 * 18 17 16 20 20 C 1.53003 * 111.00577 * 206.42627 * 18 17 16 21 21 C 1.53002 * 117.51858 * 218.25747 * 20 18 17 22 22 C 1.52995 * 59.99993 * 107.47788 * 21 20 18 23 23 C 1.47433 * 125.64644 * 179.97438 * 15 13 12 24 24 H 0.96998 * 119.99707 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46981 * 59.99642 * 9 7 2 26 26 H 1.09003 * 109.46707 * 300.00055 * 9 7 2 27 27 H 1.09003 * 109.47010 * 59.99991 * 10 9 7 28 28 H 1.08998 * 109.46797 * 300.00238 * 10 9 7 29 29 H 1.08996 * 109.47397 * 59.99953 * 11 10 9 30 30 H 1.08998 * 109.47621 * 299.99854 * 11 10 9 31 31 H 0.96997 * 120.00130 * 0.02562 * 12 11 10 32 32 H 1.09000 * 109.88325 * 300.44172 * 16 15 13 33 33 H 1.09003 * 109.88280 * 61.44647 * 16 15 13 34 34 H 1.09002 * 110.72195 * 263.83717 * 17 16 15 35 35 H 1.08994 * 110.72328 * 140.55521 * 17 16 15 36 36 H 0.96696 * 113.99805 * 303.90130 * 19 18 17 37 37 H 1.09003 * 115.55207 * 72.55638 * 20 18 17 38 38 H 1.08993 * 117.49904 * 214.97023 * 21 20 18 39 39 H 1.09009 * 117.49229 * 359.97438 * 21 20 18 40 40 H 1.08997 * 117.50504 * 252.50836 * 22 21 20 41 41 H 1.09004 * 117.49751 * 107.49137 * 22 21 20 42 42 H 1.09005 * 110.36355 * 37.07551 * 23 15 13 43 43 H 1.08994 * 110.46101 * 274.79694 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6622 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 7 2.4322 -6.1006 -0.0037 13 6 1.9830 -7.3713 -0.0036 14 8 0.7875 -7.5935 -0.0038 15 7 2.8588 -8.3957 -0.0045 16 6 4.3236 -8.2707 -0.0045 17 6 4.9055 -9.6997 -0.0319 18 6 3.7388 -10.5388 -0.6169 19 8 3.7175 -10.4631 -2.0437 20 6 3.8209 -11.9933 -0.1490 21 6 3.4500 -13.0824 -1.1576 22 6 4.9130 -12.8720 -0.7622 23 6 2.5065 -9.8274 -0.0041 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5575 0.8880 27 1 2.8719 -3.6052 0.8873 28 1 2.8719 -3.6036 -0.8927 29 1 0.8533 -5.0443 -0.8930 30 1 0.8539 -5.0454 0.8868 31 1 3.3859 -5.9234 -0.0032 32 1 4.6488 -7.7210 -0.8879 33 1 4.6514 -7.7517 0.8962 34 1 5.1540 -10.0344 0.9752 35 1 5.7790 -9.7481 -0.6820 36 1 3.6659 -9.5614 -2.3889 37 1 3.5632 -12.1662 0.8959 38 1 2.9484 -13.9717 -0.7763 39 1 3.1471 -12.7627 -2.1547 40 1 5.5728 -12.4142 -1.4991 41 1 5.3739 -13.6232 -0.1206 42 1 1.6235 -10.0009 -0.6192 43 1 2.3336 -10.1769 1.0137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375745959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = -62.992132 kcal Electronic energy + Delta-G solvation = -21951.596763 eV Core-core repulsion = 18611.198009 eV Total energy + Delta-G solvation = -3340.398753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71910 -39.04935 -36.58889 -35.40435 -35.11480 -33.30378 -31.51757 -30.60819 -29.15961 -26.68203 -24.31663 -23.00028 -22.67298 -22.29864 -20.62434 -20.44523 -19.69500 -18.26098 -16.99196 -16.74556 -16.27496 -15.72983 -15.61710 -15.18975 -14.58656 -14.49135 -14.40760 -14.01881 -13.60375 -13.32765 -13.04978 -12.67881 -12.40701 -12.28012 -11.82107 -11.78812 -11.74056 -11.68365 -11.40702 -11.03923 -10.88986 -10.72973 -10.62768 -10.57534 -10.13333 -10.03014 -9.86809 -9.45186 -9.14349 -8.98312 -8.53601 -8.37293 -6.01966 -4.05245 2.55089 3.27347 3.31551 3.33345 3.36424 3.38159 3.74291 3.99802 4.10071 4.17822 4.33690 4.44242 4.61362 4.69600 4.80565 4.90360 5.05116 5.22577 5.33598 5.35839 5.40490 5.45969 5.50992 5.59534 5.66732 5.69359 5.79857 5.81776 5.93729 6.04536 6.17010 6.50625 6.60744 6.80607 7.00351 7.04918 7.23555 7.63041 7.76023 7.96635 8.03273 8.37409 8.68553 9.01136 9.58767 11.09283 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046932 B = 0.002502 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.469318 B =11187.752067 C =11518.224724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.738 5.738 13 C 0.718 3.282 14 O -0.587 6.587 15 N -0.644 5.644 16 C 0.093 3.907 17 C -0.152 4.152 18 C 0.153 3.847 19 O -0.546 6.546 20 C -0.143 4.143 21 C -0.165 4.165 22 C -0.168 4.168 23 C 0.103 3.897 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.393 0.607 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.382 0.618 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.309 -24.878 -0.461 27.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.392 5.392 13 C 0.420 3.580 14 O -0.465 6.465 15 N -0.385 5.385 16 C -0.031 4.031 17 C -0.190 4.190 18 C 0.111 3.889 19 O -0.352 6.352 20 C -0.162 4.162 21 C -0.202 4.202 22 C -0.205 4.205 23 C -0.021 4.021 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.230 0.770 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.201 -25.445 -0.404 27.805 hybrid contribution 0.926 1.783 0.093 2.011 sum 12.127 -23.663 -0.311 26.591 Atomic orbital electron populations 1.69956 1.06052 1.26811 1.50416 1.25034 0.94870 0.99302 0.95283 0.86635 0.79550 0.83086 0.78565 1.20251 1.21268 1.20262 1.21160 0.92929 0.90945 1.51106 0.92721 1.19024 0.93840 0.90762 0.97715 1.21887 0.99795 0.93296 1.00792 1.21542 0.91294 0.84083 1.01970 1.45405 1.10513 1.04225 1.79078 1.15526 0.84283 0.80140 0.78051 1.90936 1.13631 1.83702 1.58213 1.47591 1.05577 1.05563 1.79725 1.22053 0.80806 0.98049 1.02172 1.23274 0.98795 0.93674 1.03292 1.21594 0.93015 0.93133 0.81168 1.86450 1.96455 1.33441 1.18863 1.22011 1.06505 0.88992 0.98679 1.22903 0.97787 0.98924 1.00544 1.22896 0.92154 1.02033 1.03443 1.22690 0.98492 0.79239 1.01696 0.92854 0.96229 0.96225 0.92799 0.92780 0.91863 0.91899 0.77324 0.91377 0.91102 0.89276 0.89083 0.76976 0.86338 0.88963 0.87664 0.88460 0.88859 0.89464 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.13 2.42 5.67 -4.04 -0.02 2.40 16 12 N -0.74 -11.03 5.52 -65.23 -0.36 -11.39 16 13 C 0.72 11.43 8.49 -86.91 -0.74 10.69 16 14 O -0.59 -11.95 16.60 5.29 0.09 -11.86 16 15 N -0.64 -7.42 3.33 -176.22 -0.59 -8.00 16 16 C 0.09 0.72 5.89 -3.07 -0.02 0.70 16 17 C -0.15 -0.95 6.12 -24.90 -0.15 -1.10 16 18 C 0.15 1.18 1.13 -88.46 -0.10 1.08 16 19 O -0.55 -4.72 11.73 -35.23 -0.41 -5.14 16 20 C -0.14 -0.99 5.09 -90.62 -0.46 -1.45 16 21 C -0.16 -1.19 9.92 -26.73 -0.27 -1.45 16 22 C -0.17 -1.07 10.06 -26.73 -0.27 -1.34 16 23 C 0.10 1.05 6.08 -2.51 -0.02 1.04 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.39 4.78 7.46 -40.82 -0.30 4.48 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.38 2.80 8.78 45.56 0.40 3.20 16 37 H 0.12 0.69 8.07 -51.93 -0.42 0.28 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.90 7.29 -51.92 -0.38 0.52 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 1.06 8.04 -51.93 -0.42 0.65 16 43 H 0.07 0.71 7.98 -51.93 -0.41 0.30 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -33.44 353.99 -9.52 -42.96 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.57 Total: 2.60 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.73 Total: -4.83 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.21 Total: -45.52 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.33 Total: -17.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.44 -9.52 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375745959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.031 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds