Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99871 * 2 1 4 4 H 1.48504 * 109.46860 * 274.50564 * 3 2 1 5 5 H 1.48492 * 109.47170 * 34.50677 * 3 2 1 6 6 H 1.48500 * 109.47140 * 154.50976 * 3 2 1 7 7 C 1.38812 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00220 * 341.56498 * 7 2 1 9 9 N 1.36938 * 119.99974 * 161.56154 * 7 2 1 10 10 C 1.47217 * 120.81213 * 330.51067 * 9 7 2 11 11 C 1.53197 * 108.85028 * 233.66071 * 10 9 7 12 12 C 1.53037 * 109.31013 * 305.34751 * 11 10 9 13 13 C 1.53038 * 109.54159 * 61.37034 * 12 11 10 14 14 C 1.46917 * 120.63407 * 150.64727 * 9 7 2 15 15 H 1.08994 * 109.59142 * 246.17973 * 14 9 7 16 16 C 1.53002 * 109.58615 * 6.46393 * 14 9 7 17 17 O 1.45196 * 109.47369 * 294.71550 * 16 14 9 18 18 C 1.34634 * 117.00510 * 179.97438 * 17 16 14 19 19 O 1.21512 * 119.99745 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00297 * 179.97438 * 18 17 16 21 21 C 1.47025 * 125.64856 * 359.69216 * 20 18 17 22 22 C 1.54307 * 107.27707 * 180.96682 * 21 20 18 23 23 C 1.55155 * 102.86478 * 22.52494 * 22 21 20 24 24 C 1.47424 * 125.64968 * 179.97438 * 20 18 17 25 25 H 0.96993 * 120.00072 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.56246 * 113.84470 * 10 9 7 27 27 H 1.08998 * 109.53268 * 353.45895 * 10 9 7 28 28 H 1.08993 * 109.49264 * 185.39347 * 11 10 9 29 29 H 1.08998 * 109.49684 * 65.29697 * 11 10 9 30 30 H 1.08995 * 109.46194 * 301.34563 * 12 11 10 31 31 H 1.09005 * 109.44682 * 181.38178 * 12 11 10 32 32 H 1.09004 * 109.50292 * 178.68026 * 13 12 11 33 33 H 1.09002 * 109.49763 * 58.57899 * 13 12 11 34 34 H 1.09000 * 109.46859 * 54.71522 * 16 14 9 35 35 H 1.09000 * 109.47441 * 174.71327 * 16 14 9 36 36 H 1.08997 * 109.87794 * 300.51249 * 21 20 18 37 37 H 1.09008 * 109.87984 * 61.67617 * 21 20 18 38 38 H 1.09003 * 110.93117 * 264.10928 * 22 21 20 39 39 H 1.09003 * 110.74524 * 140.85167 * 22 21 20 40 40 H 1.09001 * 111.01114 * 206.23012 * 23 22 21 41 41 H 1.09001 * 111.03659 * 82.39123 * 23 22 21 42 42 H 1.08999 * 110.36954 * 274.67664 * 24 20 18 43 43 H 1.08997 * 110.36243 * 36.99943 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4024 2.1014 -1.3958 5 1 1.4986 2.6233 0.7931 6 1 3.5922 1.4146 0.6025 7 6 2.0103 -1.2022 0.0005 8 1 1.5119 -2.1133 0.2967 9 7 3.3269 -1.2328 -0.3745 10 6 3.8570 -0.2620 -1.3460 11 6 4.5469 -1.0245 -2.4817 12 6 5.6026 -1.9630 -1.8929 13 6 4.9265 -2.9793 -0.9698 14 6 4.2409 -2.2389 0.1829 15 1 4.9930 -1.7474 0.8001 16 6 3.4502 -3.2347 1.0338 17 8 2.8935 -2.5508 2.1873 18 6 2.1637 -3.2907 3.0433 19 8 1.9962 -4.4755 2.8320 20 7 1.6191 -2.7172 4.1346 21 6 1.7471 -1.3023 4.5132 22 6 0.9828 -1.1121 5.8401 23 6 0.9519 -2.5468 6.4298 24 6 0.8011 -3.4060 5.1494 25 1 -0.4850 0.8400 -0.0004 26 1 4.5778 0.3907 -0.8535 27 1 3.0383 0.3333 -1.7502 28 1 5.0260 -0.3158 -3.1571 29 1 3.8072 -1.6075 -3.0303 30 1 6.3282 -1.3819 -1.3237 31 1 6.1119 -2.4887 -2.7007 32 1 5.6759 -3.6620 -0.5692 33 1 4.1832 -3.5439 -1.5327 34 1 2.6421 -3.6599 0.4386 35 1 4.1128 -4.0326 1.3693 36 1 2.7984 -1.0487 4.6491 37 1 1.3080 -0.6707 3.7408 38 1 -0.0285 -0.7481 5.6583 39 1 1.5217 -0.4345 6.5024 40 1 0.0961 -2.6790 7.0918 41 1 1.8830 -2.7771 6.9477 42 1 -0.2423 -3.4404 4.8362 43 1 1.1798 -4.4134 5.3218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375760621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = -54.068369 kcal Electronic energy + Delta-G solvation = -23875.537681 eV Core-core repulsion = 20535.525890 eV Total energy + Delta-G solvation = -3340.011790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95808 -38.33516 -37.45964 -35.41981 -33.03622 -31.88948 -31.10535 -30.61449 -28.85165 -26.34656 -24.81700 -23.38767 -22.62840 -21.17451 -20.75151 -19.83026 -19.31725 -17.60402 -16.77968 -16.28753 -16.23959 -15.63957 -15.10534 -14.38698 -13.92218 -13.68367 -13.65730 -13.40726 -13.24833 -13.15613 -12.76166 -12.54229 -12.22288 -11.98217 -11.88570 -11.45875 -11.35568 -11.24313 -11.16231 -10.76217 -10.69313 -10.61786 -10.44279 -10.18732 -10.01967 -9.83069 -9.80418 -9.53632 -9.36402 -8.54394 -8.36086 -6.87908 -5.85303 -3.23411 2.64515 3.35554 3.44329 3.50892 3.55104 4.35327 4.59480 4.69192 4.76436 4.83327 4.95544 5.34092 5.37154 5.41095 5.42111 5.44728 5.58400 5.73407 5.74932 5.80721 5.84833 5.87385 5.90040 5.99457 6.01595 6.13852 6.14880 6.20113 6.28155 6.38407 6.39465 6.47778 6.53434 6.59502 6.70765 6.74129 6.96571 7.10256 7.91995 8.01461 8.40601 8.89309 8.99270 9.79050 10.15030 11.30484 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.006641 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.741834 B = 4215.246967 C = 5286.786021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.880 3.120 4 H -0.292 1.292 5 H -0.306 1.306 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.127 3.873 11 C -0.137 4.137 12 C -0.107 4.107 13 C -0.129 4.129 14 C 0.175 3.825 15 H 0.040 0.960 16 C 0.103 3.897 17 O -0.330 6.330 18 C 0.668 3.332 19 O -0.589 6.589 20 N -0.605 5.605 21 C 0.105 3.895 22 C -0.132 4.132 23 C -0.133 4.133 24 C 0.126 3.874 25 H 0.260 0.740 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 -3.010 7.975 10.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.711 3.289 4 H -0.220 1.220 5 H -0.234 1.234 6 H -0.195 1.195 7 C -0.367 4.367 8 H 0.104 0.896 9 N -0.326 5.326 10 C 0.002 3.998 11 C -0.176 4.176 12 C -0.144 4.144 13 C -0.168 4.168 14 C 0.069 3.931 15 H 0.058 0.942 16 C 0.028 3.972 17 O -0.241 6.241 18 C 0.424 3.576 19 O -0.481 6.481 20 N -0.347 5.347 21 C -0.017 4.017 22 C -0.170 4.170 23 C -0.171 4.171 24 C 0.004 3.996 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.735 -3.309 7.774 10.805 hybrid contribution 0.355 1.036 -0.115 1.101 sum 7.090 -2.274 7.660 10.682 Atomic orbital electron populations 1.69819 1.05615 1.26137 1.54074 1.25252 0.95129 0.97207 0.99752 0.86979 0.80165 0.84949 0.76785 1.21997 1.23444 1.19478 1.18802 0.83362 0.94453 1.40089 0.89599 1.44444 1.07232 1.34739 1.46151 1.21381 0.96881 0.91936 0.89576 1.22022 0.98143 0.98766 0.98655 1.21350 0.97562 0.97298 0.98230 1.21931 0.99358 0.97843 0.97659 1.20584 0.91559 0.89650 0.91333 0.94245 1.22926 0.96837 0.93742 0.83702 1.86470 1.62769 1.40896 1.34012 1.17623 0.77689 0.82892 0.79413 1.90920 1.65737 1.15149 1.76257 1.46882 1.53995 1.10879 1.22933 1.22004 1.00643 0.82201 0.96897 1.22647 1.01486 0.96958 0.95875 1.22801 1.02755 0.95152 0.96421 1.22128 0.95013 0.96545 0.85906 0.93044 0.95703 0.91095 0.92911 0.91719 0.92637 0.92878 0.92417 0.91479 0.90688 0.92424 0.91544 0.90053 0.90323 0.90132 0.89743 0.90681 0.91305 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.95 13.97 55.49 0.78 -27.18 16 2 C 0.02 0.71 5.26 -17.43 -0.09 0.61 16 3 Si 0.88 22.45 24.36 -169.99 -4.14 18.31 16 4 H -0.29 -7.27 6.73 56.52 0.38 -6.89 16 5 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.76 6.42 56.52 0.36 -6.40 16 7 C -0.24 -6.59 8.32 -15.06 -0.13 -6.72 16 8 H 0.09 2.61 6.02 -52.49 -0.32 2.29 16 9 N -0.60 -14.16 2.76 -164.55 -0.45 -14.61 16 10 C 0.13 2.77 4.19 -3.55 -0.01 2.75 16 11 C -0.14 -2.39 6.08 -26.61 -0.16 -2.56 16 12 C -0.11 -1.63 5.88 -26.69 -0.16 -1.79 16 13 C -0.13 -2.09 5.37 -26.61 -0.14 -2.23 16 14 C 0.18 3.49 3.19 -67.60 -0.22 3.27 16 15 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 16 C 0.10 2.10 4.15 37.16 0.15 2.26 16 17 O -0.33 -7.37 8.12 -40.31 -0.33 -7.70 16 18 C 0.67 14.43 8.62 54.05 0.47 14.89 16 19 O -0.59 -13.74 16.39 -19.28 -0.32 -14.06 16 20 N -0.60 -10.90 3.33 -176.30 -0.59 -11.49 16 21 C 0.11 1.67 6.89 -3.07 -0.02 1.65 16 22 C -0.13 -1.49 6.95 -24.91 -0.17 -1.66 16 23 C -0.13 -1.35 7.08 -24.57 -0.17 -1.52 16 24 C 0.13 1.76 6.91 -2.52 -0.02 1.74 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.03 0.54 6.93 -51.93 -0.36 0.18 16 27 H 0.07 1.69 4.68 -51.93 -0.24 1.45 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.68 7.10 -51.93 -0.37 1.31 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -33.35 331.28 -7.97 -41.32 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.24 Total: -0.29 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -0.68 Total: 10.69 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.26 Total: -53.28 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.64 Total: -21.76 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.35 -7.97 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375760621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.745 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds