Wall clock time and date at job start Tue Mar 31 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99871 * 2 1 4 4 H 1.48504 * 109.46860 * 274.50564 * 3 2 1 5 5 H 1.48492 * 109.47170 * 34.50677 * 3 2 1 6 6 H 1.48500 * 109.47140 * 154.50976 * 3 2 1 7 7 C 1.38812 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00220 * 341.56498 * 7 2 1 9 9 N 1.36938 * 119.99974 * 161.56154 * 7 2 1 10 10 C 1.47217 * 120.81213 * 330.51067 * 9 7 2 11 11 C 1.53197 * 108.85028 * 233.66071 * 10 9 7 12 12 C 1.53037 * 109.31013 * 305.34751 * 11 10 9 13 13 C 1.53038 * 109.54159 * 61.37034 * 12 11 10 14 14 C 1.46917 * 120.63407 * 150.64727 * 9 7 2 15 15 H 1.08994 * 109.59142 * 246.17973 * 14 9 7 16 16 C 1.53002 * 109.58615 * 6.46393 * 14 9 7 17 17 O 1.45196 * 109.47369 * 294.71550 * 16 14 9 18 18 C 1.34634 * 117.00510 * 179.97438 * 17 16 14 19 19 O 1.21512 * 119.99745 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00297 * 179.97438 * 18 17 16 21 21 C 1.47025 * 125.64856 * 359.69216 * 20 18 17 22 22 C 1.54307 * 107.27707 * 180.96682 * 21 20 18 23 23 C 1.55155 * 102.86478 * 22.52494 * 22 21 20 24 24 C 1.47424 * 125.64968 * 179.97438 * 20 18 17 25 25 H 0.96993 * 120.00072 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.56246 * 113.84470 * 10 9 7 27 27 H 1.08998 * 109.53268 * 353.45895 * 10 9 7 28 28 H 1.08993 * 109.49264 * 185.39347 * 11 10 9 29 29 H 1.08998 * 109.49684 * 65.29697 * 11 10 9 30 30 H 1.08995 * 109.46194 * 301.34563 * 12 11 10 31 31 H 1.09005 * 109.44682 * 181.38178 * 12 11 10 32 32 H 1.09004 * 109.50292 * 178.68026 * 13 12 11 33 33 H 1.09002 * 109.49763 * 58.57899 * 13 12 11 34 34 H 1.09000 * 109.46859 * 54.71522 * 16 14 9 35 35 H 1.09000 * 109.47441 * 174.71327 * 16 14 9 36 36 H 1.08997 * 109.87794 * 300.51249 * 21 20 18 37 37 H 1.09008 * 109.87984 * 61.67617 * 21 20 18 38 38 H 1.09003 * 110.93117 * 264.10928 * 22 21 20 39 39 H 1.09003 * 110.74524 * 140.85167 * 22 21 20 40 40 H 1.09001 * 111.01114 * 206.23012 * 23 22 21 41 41 H 1.09001 * 111.03659 * 82.39123 * 23 22 21 42 42 H 1.08999 * 110.36954 * 274.67664 * 24 20 18 43 43 H 1.08997 * 110.36243 * 36.99943 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4024 2.1014 -1.3958 5 1 1.4986 2.6233 0.7931 6 1 3.5922 1.4146 0.6025 7 6 2.0103 -1.2022 0.0005 8 1 1.5119 -2.1133 0.2967 9 7 3.3269 -1.2328 -0.3745 10 6 3.8570 -0.2620 -1.3460 11 6 4.5469 -1.0245 -2.4817 12 6 5.6026 -1.9630 -1.8929 13 6 4.9265 -2.9793 -0.9698 14 6 4.2409 -2.2389 0.1829 15 1 4.9930 -1.7474 0.8001 16 6 3.4502 -3.2347 1.0338 17 8 2.8935 -2.5508 2.1873 18 6 2.1637 -3.2907 3.0433 19 8 1.9962 -4.4755 2.8320 20 7 1.6191 -2.7172 4.1346 21 6 1.7471 -1.3023 4.5132 22 6 0.9828 -1.1121 5.8401 23 6 0.9519 -2.5468 6.4298 24 6 0.8011 -3.4060 5.1494 25 1 -0.4850 0.8400 -0.0004 26 1 4.5778 0.3907 -0.8535 27 1 3.0383 0.3333 -1.7502 28 1 5.0260 -0.3158 -3.1571 29 1 3.8072 -1.6075 -3.0303 30 1 6.3282 -1.3819 -1.3237 31 1 6.1119 -2.4887 -2.7007 32 1 5.6759 -3.6620 -0.5692 33 1 4.1832 -3.5439 -1.5327 34 1 2.6421 -3.6599 0.4386 35 1 4.1128 -4.0326 1.3693 36 1 2.7984 -1.0487 4.6491 37 1 1.3080 -0.6707 3.7408 38 1 -0.0285 -0.7481 5.6583 39 1 1.5217 -0.4345 6.5024 40 1 0.0961 -2.6790 7.0918 41 1 1.8830 -2.7771 6.9477 42 1 -0.2423 -3.4404 4.8362 43 1 1.1798 -4.4134 5.3218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375760621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:57 Heat of formation + Delta-G solvation = -76.575953 kcal Electronic energy + Delta-G solvation = -23876.513683 eV Core-core repulsion = 20535.525890 eV Total energy + Delta-G solvation = -3340.987792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55102 -39.85199 -38.88312 -37.10951 -34.92318 -33.39724 -32.58560 -32.37732 -30.00504 -27.98010 -26.62666 -24.77854 -24.32687 -22.41420 -22.06019 -21.41989 -20.88459 -19.12119 -18.58390 -17.95544 -17.89828 -17.23545 -16.80440 -15.97924 -15.46007 -15.29459 -15.11510 -14.83616 -14.65844 -14.40680 -14.32602 -13.98200 -13.91177 -13.59468 -13.31745 -13.09428 -13.05567 -12.56914 -12.36526 -12.23202 -12.19879 -12.01674 -11.74782 -11.71389 -11.62873 -11.55759 -11.50615 -11.23820 -11.21449 -10.61833 -9.80979 -8.84175 -8.08030 -5.41804 1.16259 1.29692 1.40138 1.49886 1.76186 2.45807 2.94778 3.07986 3.28249 3.65123 3.66888 3.91338 4.04243 4.04865 4.15961 4.24286 4.26310 4.28402 4.36966 4.42458 4.44903 4.58551 4.63190 4.81262 4.84037 4.85002 4.89656 4.98139 5.01484 5.07666 5.13130 5.20848 5.23565 5.25632 5.28378 5.36974 5.44265 5.59408 5.92415 6.19614 6.36393 6.95733 7.23750 7.66578 8.06033 9.12194 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.006641 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.741834 B = 4215.246967 C = 5286.786021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.036 4.036 3 Si 0.945 3.055 4 H -0.281 1.281 5 H -0.315 1.315 6 H -0.260 1.260 7 C -0.213 4.213 8 H 0.045 0.955 9 N -0.616 5.616 10 C 0.120 3.880 11 C -0.131 4.131 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.171 3.829 15 H 0.050 0.950 16 C 0.103 3.897 17 O -0.348 6.348 18 C 0.654 3.346 19 O -0.617 6.617 20 N -0.606 5.606 21 C 0.099 3.901 22 C -0.121 4.121 23 C -0.113 4.113 24 C 0.112 3.888 25 H 0.257 0.743 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 -2.621 8.941 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.229 4.229 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.244 1.244 6 H -0.184 1.184 7 C -0.343 4.343 8 H 0.063 0.937 9 N -0.342 5.342 10 C -0.005 4.005 11 C -0.170 4.170 12 C -0.139 4.139 13 C -0.161 4.161 14 C 0.066 3.934 15 H 0.067 0.933 16 C 0.028 3.972 17 O -0.260 6.260 18 C 0.410 3.590 19 O -0.511 6.511 20 N -0.348 5.348 21 C -0.023 4.023 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.009 4.009 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.536 -2.919 8.747 13.265 hybrid contribution -0.510 0.808 -0.421 1.044 sum 9.026 -2.111 8.326 12.460 Atomic orbital electron populations 1.69964 1.07356 1.26619 1.57185 1.25832 0.95699 1.00508 1.00864 0.85923 0.78900 0.80626 0.77047 1.20832 1.24405 1.18421 1.18565 0.85151 0.92777 1.37812 0.93736 1.44581 1.06372 1.35993 1.47210 1.21475 0.96374 0.92030 0.90583 1.21949 0.98432 0.99311 0.97295 1.21367 0.96849 0.96716 0.98968 1.21908 0.99657 0.98279 0.96280 1.20877 0.90874 0.88966 0.92688 0.93253 1.23022 0.96207 0.94714 0.83216 1.86443 1.63192 1.41811 1.34571 1.17981 0.78039 0.82871 0.80143 1.90871 1.66905 1.16185 1.77120 1.47256 1.53063 1.12189 1.22257 1.22157 1.01573 0.80347 0.98241 1.22660 1.01179 0.98546 0.93495 1.22808 1.05065 0.92684 0.94533 1.22505 0.94087 0.97410 0.86869 0.93415 0.94840 0.93770 0.90023 0.93074 0.91299 0.89542 0.88887 0.92715 0.93914 0.89743 0.90878 0.94205 0.90246 0.87030 0.86419 0.89105 0.91757 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.09 13.97 21.65 0.30 -61.79 16 2 C -0.04 -2.13 5.26 84.86 0.45 -1.68 16 3 Si 0.95 47.69 24.36 68.60 1.67 49.36 16 4 H -0.28 -13.53 6.73 99.48 0.67 -12.87 16 5 H -0.31 -16.17 7.11 99.48 0.71 -15.46 16 6 H -0.26 -12.49 6.42 99.48 0.64 -11.85 16 7 C -0.21 -12.28 8.32 84.03 0.70 -11.58 16 8 H 0.04 2.91 6.02 -2.92 -0.02 2.89 16 9 N -0.62 -29.12 2.76 -674.50 -1.86 -30.98 16 10 C 0.12 5.03 4.19 86.31 0.36 5.39 16 11 C -0.13 -4.22 6.08 30.67 0.19 -4.04 16 12 C -0.10 -2.67 5.88 30.62 0.18 -2.49 16 13 C -0.12 -3.64 5.37 30.67 0.16 -3.48 16 14 C 0.17 6.65 3.19 44.98 0.14 6.80 16 15 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.10 4.31 4.15 71.98 0.30 4.61 16 17 O -0.35 -16.20 8.12 -55.43 -0.45 -16.65 16 18 C 0.65 29.52 8.62 129.79 1.12 30.64 16 19 O -0.62 -30.04 16.39 19.80 0.32 -29.71 16 20 N -0.61 -22.45 3.33 -942.09 -3.13 -25.59 16 21 C 0.10 3.19 6.89 86.72 0.60 3.79 16 22 C -0.12 -2.49 6.95 31.78 0.22 -2.27 16 23 C -0.11 -1.97 7.08 31.99 0.23 -1.74 16 24 C 0.11 3.08 6.91 86.86 0.60 3.68 16 25 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.03 1.36 6.93 -2.39 -0.02 1.34 16 27 H 0.04 2.08 4.68 -2.39 -0.01 2.07 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.04 2.03 7.10 -2.39 -0.02 2.02 16 35 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.08 2.13 8.04 -2.39 -0.02 2.11 16 Total: -1.00 -77.80 331.28 2.97 -74.83 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.87 Total: 12.90 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 5.24 Total: 27.64 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -4.69 Total: -118.35 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.13 Total: -46.36 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.67 Total: 49.36 kcal Total: -77.80 2.97 -74.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375760621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.750 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds