Wall clock time and date at job start Tue Mar 31 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86791 * 120.00278 * 2 1 4 4 H 1.48498 * 109.47436 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46940 * 299.99429 * 3 2 1 6 6 H 1.48498 * 109.47568 * 59.99196 * 3 2 1 7 7 C 1.38814 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99949 * 193.17739 * 7 2 1 9 9 N 1.36935 * 120.00241 * 13.17932 * 7 2 1 10 10 C 1.46929 * 120.63028 * 30.53135 * 9 7 2 11 11 C 1.53191 * 108.77240 * 126.43262 * 10 9 7 12 12 C 1.53045 * 109.31260 * 54.63833 * 11 10 9 13 13 C 1.53042 * 109.53664 * 298.63029 * 12 11 10 14 14 C 1.46930 * 120.60415 * 210.55358 * 9 7 2 15 15 H 1.09003 * 109.56058 * 113.76201 * 14 9 7 16 16 C 1.52999 * 109.61657 * 353.33580 * 14 9 7 17 17 O 1.45205 * 109.46981 * 65.69965 * 16 14 9 18 18 C 1.34638 * 116.99729 * 180.02562 * 17 16 14 19 19 O 1.21516 * 120.00171 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99582 * 179.97438 * 18 17 16 21 21 C 1.47016 * 125.65231 * 359.68923 * 20 18 17 22 22 C 1.54316 * 107.27694 * 180.96727 * 21 20 18 23 23 C 1.55152 * 102.86108 * 22.52947 * 22 21 20 24 24 C 1.47428 * 125.64624 * 180.02562 * 20 18 17 25 25 H 0.97005 * 119.99466 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.58707 * 6.64791 * 10 9 7 27 27 H 1.09005 * 109.58588 * 246.21895 * 10 9 7 28 28 H 1.08995 * 109.49967 * 294.68339 * 11 10 9 29 29 H 1.08998 * 109.49612 * 174.58388 * 11 10 9 30 30 H 1.09000 * 109.46079 * 178.60817 * 12 11 10 31 31 H 1.08997 * 109.45811 * 58.65547 * 12 11 10 32 32 H 1.08997 * 109.49349 * 181.31789 * 13 12 11 33 33 H 1.09002 * 109.49420 * 301.38405 * 13 12 11 34 34 H 1.09000 * 109.47093 * 185.69611 * 16 14 9 35 35 H 1.08991 * 109.47231 * 305.69418 * 16 14 9 36 36 H 1.08996 * 109.88481 * 300.52017 * 21 20 18 37 37 H 1.09005 * 109.87910 * 61.67733 * 21 20 18 38 38 H 1.09002 * 110.92312 * 264.11144 * 22 21 20 39 39 H 1.09005 * 110.58865 * 140.78663 * 22 21 20 40 40 H 1.09000 * 111.00061 * 206.22296 * 23 22 21 41 41 H 1.09008 * 111.03864 * 82.39544 * 23 22 21 42 42 H 1.09000 * 110.36319 * 274.67329 * 24 20 18 43 43 H 1.09001 * 110.36543 * 36.88358 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0688 -1.2145 0.2138 9 7 1.3525 -2.3726 -0.2693 10 6 0.1891 -2.3878 -1.1666 11 6 0.4270 -3.4294 -2.2645 12 6 0.7413 -4.7814 -1.6199 13 6 2.0160 -4.6644 -0.7810 14 6 1.7970 -3.6366 0.3337 15 1 1.0342 -4.0008 1.0219 16 6 3.1084 -3.4121 1.0891 17 8 2.8720 -2.5291 2.2173 18 6 3.9323 -2.2282 2.9906 19 8 5.0251 -2.6913 2.7302 20 7 3.7814 -1.4135 4.0536 21 6 2.5233 -0.7817 4.4773 22 6 2.8376 0.0768 5.7204 23 6 4.3613 0.3360 5.5850 24 6 4.8521 -1.0026 4.9800 25 1 -0.4849 0.8401 -0.0004 26 1 0.0628 -1.4038 -1.6178 27 1 -0.7050 -2.6505 -0.6012 28 1 1.2670 -3.1183 -2.8854 29 1 -0.4677 -3.5194 -2.8805 30 1 0.8867 -5.5300 -2.3988 31 1 -0.0887 -5.0803 -0.9798 32 1 2.2522 -5.6334 -0.3412 33 1 2.8411 -4.3422 -1.4161 34 1 3.4883 -4.3681 1.4494 35 1 3.8401 -2.9592 0.4202 36 1 2.1373 -0.1509 3.6766 37 1 1.7917 -1.5480 4.7336 38 1 2.6195 -0.4711 6.6372 39 1 2.2826 1.0145 5.6890 40 1 4.8154 0.5143 6.5597 41 1 4.5582 1.1664 4.9069 42 1 4.9818 -1.7483 5.7644 43 1 5.7867 -0.8562 4.4386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375760638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:01 Heat of formation + Delta-G solvation = -59.959171 kcal Electronic energy + Delta-G solvation = -23879.887759 eV Core-core repulsion = 20539.620524 eV Total energy + Delta-G solvation = -3340.267234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98093 -38.19075 -37.32242 -35.40659 -33.02268 -31.80852 -31.02366 -29.82576 -28.88639 -26.16350 -24.90469 -23.42630 -22.07587 -21.18328 -20.65855 -19.84726 -19.06557 -17.62173 -16.66519 -16.50449 -16.03045 -15.65478 -14.71126 -14.06478 -13.97002 -13.68170 -13.52672 -13.35926 -13.21094 -12.81377 -12.74989 -12.32032 -12.30576 -11.81968 -11.67424 -11.30124 -11.21212 -11.17738 -10.90388 -10.73833 -10.70055 -10.51615 -10.23692 -10.13879 -10.04295 -9.92827 -9.79262 -9.44798 -9.32093 -8.43450 -8.38853 -6.56039 -5.71287 -3.15912 2.62203 3.35991 3.39125 3.45131 3.48995 4.34728 4.52119 4.66295 4.75779 4.93654 5.25902 5.36301 5.41575 5.43401 5.57404 5.65261 5.69772 5.72132 5.74742 5.86124 5.94116 6.00167 6.03955 6.05977 6.08118 6.18141 6.25094 6.35789 6.39279 6.54192 6.58838 6.73516 6.75630 6.88939 6.92877 7.13371 7.44440 7.72775 7.87011 7.87889 8.51242 8.85800 9.27878 9.88425 10.46169 11.37241 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.006878 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.615268 B = 4069.996152 C = 5208.828906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.006 3.994 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.174 3.826 11 C -0.145 4.145 12 C -0.106 4.106 13 C -0.127 4.127 14 C 0.172 3.828 15 H 0.036 0.964 16 C 0.103 3.897 17 O -0.326 6.326 18 C 0.663 3.337 19 O -0.590 6.590 20 N -0.607 5.607 21 C 0.105 3.895 22 C -0.131 4.131 23 C -0.135 4.135 24 C 0.126 3.874 25 H 0.250 0.750 26 H 0.087 0.913 27 H 0.017 0.983 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 -3.391 7.712 9.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.080 0.920 9 N -0.308 5.308 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.144 4.144 13 C -0.166 4.166 14 C 0.064 3.936 15 H 0.053 0.947 16 C 0.028 3.972 17 O -0.238 6.238 18 C 0.420 3.580 19 O -0.482 6.482 20 N -0.350 5.350 21 C -0.017 4.017 22 C -0.169 4.169 23 C -0.173 4.173 24 C 0.004 3.996 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.898 -3.488 7.491 9.136 hybrid contribution 0.429 0.883 -0.031 0.983 sum 4.328 -2.605 7.459 9.009 Atomic orbital electron populations 1.70010 1.05025 1.24929 1.54976 1.24995 0.95189 0.97872 1.01151 0.86374 0.79506 0.84651 0.77279 1.20454 1.21663 1.21744 1.19049 0.91224 0.83819 1.41777 0.91955 1.44065 1.34258 1.02030 1.50442 1.20779 0.88094 0.97590 0.88703 1.22213 0.99931 0.96544 0.99712 1.21349 0.97267 0.97514 0.98239 1.21932 0.98430 0.97994 0.98284 1.20589 0.92413 0.88975 0.91575 0.94675 1.22982 0.99266 0.90336 0.84606 1.86527 1.34740 1.63521 1.39001 1.17727 0.83002 0.78210 0.79096 1.90920 1.26481 1.57389 1.73372 1.46949 1.11527 1.49115 1.27369 1.22023 0.86036 0.96689 0.96996 1.22648 0.96209 1.00417 0.97650 1.22810 0.95964 0.97099 1.01432 1.22108 0.90769 0.95254 0.91432 0.93939 0.89433 0.96454 0.92787 0.93430 0.93563 0.92768 0.92936 0.91992 0.92654 0.91103 0.90130 0.91263 0.90658 0.89895 0.89736 0.90396 0.91579 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 11.14 55.49 0.62 -25.25 16 2 C 0.01 0.16 4.99 -17.43 -0.09 0.07 16 3 Si 0.89 22.01 29.57 -169.99 -5.03 16.99 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.20 7.84 -15.06 -0.12 -6.32 16 8 H 0.06 1.75 5.88 -52.49 -0.31 1.44 16 9 N -0.58 -14.43 2.99 -164.77 -0.49 -14.92 16 10 C 0.17 4.12 5.27 -3.71 -0.02 4.10 16 11 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16 12 C -0.11 -1.79 5.88 -26.69 -0.16 -1.95 16 13 C -0.13 -2.23 5.37 -26.61 -0.14 -2.37 16 14 C 0.17 3.62 3.20 -67.60 -0.22 3.40 16 15 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 16 C 0.10 2.15 4.15 37.16 0.15 2.31 16 17 O -0.33 -7.35 8.18 -40.32 -0.33 -7.68 16 18 C 0.66 14.13 8.62 54.05 0.47 14.59 16 19 O -0.59 -13.53 16.39 -19.28 -0.32 -13.85 16 20 N -0.61 -10.71 3.33 -176.32 -0.59 -11.30 16 21 C 0.11 1.65 6.89 -3.07 -0.02 1.63 16 22 C -0.13 -1.46 6.95 -24.90 -0.17 -1.63 16 23 C -0.13 -1.43 7.08 -24.60 -0.17 -1.61 16 24 C 0.13 1.70 6.91 -2.54 -0.02 1.69 16 25 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.09 2.32 6.12 -51.93 -0.32 2.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.58 7.07 -51.93 -0.37 1.21 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -31.70 337.83 -9.02 -40.72 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.31 Total: -0.79 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -0.67 Total: 10.99 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.46 Total: -51.47 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.65 Total: -21.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.70 -9.02 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375760638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.241 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds