Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47126 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00317 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99679 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.47552 * 125.67477 * 359.70542 * 15 13 12 17 17 C 1.55413 * 104.86379 * 156.00561 * 16 15 13 18 18 C 1.53784 * 101.33192 * 35.95514 * 17 16 15 19 19 C 1.53148 * 111.48348 * 204.59254 * 18 17 16 20 20 C 1.54820 * 103.54963 * 238.46261 * 19 18 17 21 21 O 1.44539 * 104.87065 * 23.72338 * 20 19 18 22 22 C 1.44766 * 105.52192 * 320.38636 * 21 20 19 23 23 C 1.47380 * 125.67223 * 179.97438 * 15 13 12 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 0.96998 * 119.99881 * 0.02562 * 12 11 10 32 32 H 1.08996 * 110.33456 * 274.98970 * 16 15 13 33 33 H 1.08997 * 110.33426 * 37.23424 * 16 15 13 34 34 H 1.08999 * 111.24662 * 277.87673 * 17 16 15 35 35 H 1.09005 * 110.90910 * 153.88456 * 17 16 15 36 36 H 1.09003 * 110.60435 * 356.97670 * 19 18 17 37 37 H 1.09000 * 110.60544 * 119.78862 * 19 18 17 38 38 H 1.09003 * 110.36002 * 142.57657 * 20 19 18 39 39 H 1.09004 * 110.35685 * 264.76812 * 20 19 18 40 40 H 1.08993 * 110.43307 * 280.43886 * 22 21 20 41 41 H 1.08995 * 110.43423 * 157.93464 * 22 21 20 42 42 H 1.09001 * 109.97763 * 301.38931 * 23 15 13 43 43 H 1.09005 * 109.97237 * 62.63184 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 7 2.4322 -6.1006 -0.0024 13 6 1.9829 -7.3713 -0.0024 14 8 0.7875 -7.5934 -0.0025 15 7 2.8587 -8.3957 -0.0032 16 6 4.3289 -8.2708 -0.0104 17 6 4.8451 -9.6026 0.6022 18 6 3.8215 -10.6072 0.0473 19 6 3.7172 -11.8503 0.9358 20 6 4.0767 -13.0121 -0.0223 21 8 4.8661 -12.4004 -1.0673 22 6 4.2351 -11.1249 -1.3332 23 6 2.5072 -9.8269 -0.0028 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 3.3858 -5.9234 -0.0019 32 1 4.6941 -8.1533 -1.0306 33 1 4.6403 -7.4260 0.6040 34 1 4.8147 -9.5743 1.6914 35 1 5.8498 -9.8308 0.2463 36 1 4.4315 -11.7955 1.7574 37 1 2.7028 -11.9647 1.3178 38 1 4.6615 -13.7683 0.5014 39 1 3.1715 -13.4545 -0.4382 40 1 3.3590 -11.2587 -1.9675 41 1 4.9431 -10.4401 -1.8000 42 1 1.9011 -10.0613 0.8724 43 1 1.9601 -10.0762 -0.9120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408244524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -85.025274 kcal Electronic energy + Delta-G solvation = -22005.575042 eV Core-core repulsion = 18664.220860 eV Total energy + Delta-G solvation = -3341.354182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06233 -39.44882 -37.06899 -35.33974 -33.42371 -32.75634 -31.08698 -30.47452 -29.33441 -27.01868 -25.59682 -24.04019 -22.82138 -22.62568 -20.61322 -19.96723 -19.77468 -17.97146 -16.93867 -16.47755 -16.15921 -15.83548 -15.66594 -15.46921 -14.79398 -14.49111 -14.12901 -14.07749 -13.88266 -13.37109 -13.10663 -12.94118 -12.47515 -12.29965 -12.28149 -11.88265 -11.79327 -11.67429 -11.39587 -11.11901 -10.96149 -10.90294 -10.71484 -10.59221 -10.14911 -10.10711 -9.86089 -9.44632 -9.12547 -8.97465 -8.49696 -8.37079 -6.01707 -4.04833 2.60220 3.30683 3.31425 3.37033 3.39751 3.48768 3.88298 3.95124 4.10776 4.29761 4.44540 4.48677 4.61212 4.72748 4.83770 5.01581 5.13464 5.23664 5.27139 5.33279 5.34020 5.37656 5.42097 5.46886 5.56101 5.61924 5.67949 5.72462 5.81389 6.07329 6.18456 6.33761 6.52802 6.62141 6.82966 7.01810 7.08585 7.63929 7.76757 7.97178 8.06608 8.38006 8.71918 9.01818 9.59272 11.09585 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047122 B = 0.002490 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.065577 B =11242.217821 C =11578.229131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.739 5.739 13 C 0.718 3.282 14 O -0.590 6.590 15 N -0.642 5.642 16 C 0.097 3.903 17 C -0.115 4.115 18 C -0.108 4.108 19 C -0.141 4.141 20 C 0.044 3.956 21 O -0.376 6.376 22 C 0.060 3.940 23 C 0.143 3.857 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.393 0.607 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.384 -25.227 0.836 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.393 5.393 13 C 0.420 3.580 14 O -0.468 6.468 15 N -0.383 5.383 16 C -0.027 4.027 17 C -0.153 4.153 18 C -0.109 4.109 19 C -0.178 4.178 20 C -0.033 4.033 21 O -0.294 6.294 22 C -0.017 4.017 23 C 0.020 3.980 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.434 -25.251 0.732 27.332 hybrid contribution 0.694 1.194 0.113 1.386 sum 11.128 -24.057 0.845 26.519 Atomic orbital electron populations 1.69972 1.06051 1.26676 1.50560 1.25035 0.94868 0.99308 0.95303 0.86577 0.79780 0.83432 0.78087 1.20660 1.21208 1.19916 1.21199 0.92974 0.90937 1.50916 0.92664 1.19030 0.93850 0.90784 0.97711 1.21888 0.99792 0.93301 1.00799 1.21532 0.91297 0.84094 1.01927 1.45410 1.10512 1.04233 1.79181 1.15508 0.84270 0.80168 0.78027 1.90926 1.13691 1.83782 1.58389 1.47679 1.05734 1.05330 1.79509 1.22425 0.80601 0.98696 1.00930 1.22760 0.98496 0.92856 1.01165 1.22059 0.96116 0.96014 0.96729 1.22861 1.03429 0.93059 0.98495 1.23498 0.95830 0.95703 0.88253 1.89193 1.51702 1.32044 1.56494 1.23372 0.98284 0.85315 0.94690 1.21630 0.94862 0.78981 1.02527 0.92926 0.96228 0.96226 0.92775 0.92798 0.91924 0.91907 0.77312 0.91307 0.90529 0.89972 0.89243 0.89895 0.89752 0.89011 0.92059 0.91604 0.88621 0.91044 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.45 5.67 -4.04 -0.02 2.43 16 12 N -0.74 -11.24 5.52 -65.23 -0.36 -11.60 16 13 C 0.72 11.61 8.49 -86.92 -0.74 10.87 16 14 O -0.59 -12.04 16.67 5.29 0.09 -11.95 16 15 N -0.64 -7.59 3.34 -176.38 -0.59 -8.18 16 16 C 0.10 0.78 6.51 -2.18 -0.01 0.77 16 17 C -0.11 -0.74 5.78 -25.04 -0.14 -0.88 16 18 C -0.11 -0.76 0.80 -153.99 -0.12 -0.89 16 19 C -0.14 -0.81 6.38 -25.70 -0.16 -0.97 16 20 C 0.04 0.27 7.67 38.12 0.29 0.56 16 21 O -0.38 -3.26 11.66 -35.23 -0.41 -3.67 16 22 C 0.06 0.44 6.66 37.22 0.25 0.69 16 23 C 0.14 1.42 6.09 -3.60 -0.02 1.39 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.39 4.88 6.95 -40.82 -0.28 4.60 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.58 7.30 -51.93 -0.38 0.20 16 34 H 0.08 0.52 7.93 -51.93 -0.41 0.10 16 35 H 0.09 0.48 7.96 -51.93 -0.41 0.07 16 36 H 0.08 0.42 7.65 -51.93 -0.40 0.03 16 37 H 0.08 0.45 7.43 -51.93 -0.39 0.06 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.48 7.51 -51.93 -0.39 0.09 16 41 H 0.10 0.64 7.80 -51.93 -0.41 0.24 16 42 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 43 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -33.96 345.01 -8.92 -42.88 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.19 Total: -1.52 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.38 Total: -1.47 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.21 Total: -45.94 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.32 Total: -15.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.96 -8.92 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408244524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.145 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds