Wall clock time and date at job start Tue Mar 31 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99681 * 2 1 4 4 H 1.48497 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46867 * 299.99856 * 3 2 1 6 6 H 1.48498 * 109.47085 * 60.00104 * 3 2 1 7 7 C 1.37875 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99517 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46669 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46539 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46625 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99889 * 180.02562 * 12 11 10 14 14 O 1.21595 * 120.00240 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00259 * 179.97438 * 13 12 11 16 16 C 1.47554 * 125.67058 * 0.02562 * 15 13 12 17 17 C 1.55163 * 104.98894 * 203.86377 * 16 15 13 18 18 C 1.53787 * 101.43377 * 324.37258 * 17 16 15 19 19 C 1.53468 * 111.54392 * 155.37391 * 18 17 16 20 20 C 1.54826 * 103.58515 * 121.47580 * 19 18 17 21 21 O 1.44554 * 104.86269 * 336.27344 * 20 19 18 22 22 C 1.44762 * 105.51958 * 39.62153 * 21 20 19 23 23 C 1.47377 * 125.67525 * 179.97438 * 15 13 12 24 24 H 0.97005 * 120.00575 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47152 * 59.99652 * 9 7 2 26 26 H 1.09002 * 109.47162 * 299.99624 * 9 7 2 27 27 H 1.08995 * 109.47648 * 59.99918 * 10 9 7 28 28 H 1.08992 * 109.46925 * 299.99513 * 10 9 7 29 29 H 1.09003 * 109.47382 * 59.99897 * 11 10 9 30 30 H 1.08992 * 109.47210 * 299.99456 * 11 10 9 31 31 H 0.96995 * 120.00012 * 359.97438 * 12 11 10 32 32 H 1.08995 * 110.33660 * 322.74155 * 16 15 13 33 33 H 1.09002 * 110.33834 * 84.88246 * 16 15 13 34 34 H 1.09003 * 111.02878 * 206.33694 * 17 16 15 35 35 H 1.08990 * 111.03315 * 82.41359 * 17 16 15 36 36 H 1.08998 * 110.57969 * 2.95799 * 19 18 17 37 37 H 1.08997 * 110.60287 * 240.00741 * 19 18 17 38 38 H 1.08998 * 110.36243 * 217.43221 * 20 19 18 39 39 H 1.09002 * 110.35950 * 95.11702 * 20 19 18 40 40 H 1.09002 * 110.43393 * 79.56517 * 22 21 20 41 41 H 1.08998 * 110.42896 * 201.94211 * 22 21 20 42 42 H 1.08997 * 109.97415 * 58.64577 * 23 15 13 43 43 H 1.08993 * 109.97629 * 297.35687 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0025 12 7 2.4325 -6.1005 0.0043 13 6 1.9834 -7.3712 0.0047 14 8 0.7879 -7.5935 0.0039 15 7 2.8591 -8.3955 0.0058 16 6 4.3294 -8.2706 0.0074 17 6 4.8460 -9.6025 -0.5981 18 6 3.8221 -10.6070 -0.0433 19 6 3.7198 -11.8553 -0.9301 20 6 4.0795 -13.0146 0.0309 21 8 4.8675 -12.3996 1.0752 22 6 4.2349 -11.1242 1.3376 23 6 2.5077 -9.8268 0.0069 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8715 -3.6039 0.8922 28 1 2.8727 -3.6046 -0.8877 29 1 0.8541 -5.0454 -0.8877 30 1 0.8535 -5.0441 0.8922 31 1 3.3861 -5.9232 0.0046 32 1 4.6386 -7.4281 -0.6112 33 1 4.6980 -8.1474 1.0258 34 1 5.8505 -9.8306 -0.2416 35 1 4.8161 -9.5747 -1.6873 36 1 4.4349 -11.8018 -1.7511 37 1 2.7053 -11.9733 -1.3107 38 1 4.6656 -13.7715 -0.4904 39 1 3.1745 -13.4556 0.4487 40 1 3.3584 -11.2574 1.9716 41 1 4.9412 -10.4383 1.8053 42 1 1.9016 -10.0620 -0.8680 43 1 1.9614 -10.0754 0.9166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408244525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:07 Heat of formation + Delta-G solvation = -85.216714 kcal Electronic energy + Delta-G solvation = -22003.691709 eV Core-core repulsion = 18662.329225 eV Total energy + Delta-G solvation = -3341.362484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05256 -39.44461 -37.07356 -35.33975 -33.42224 -32.74826 -31.08627 -30.48156 -29.34739 -27.01981 -25.59706 -24.03204 -22.82243 -22.62120 -20.61411 -19.96844 -19.77642 -17.97236 -16.93787 -16.47873 -16.15893 -15.83728 -15.66612 -15.46907 -14.79788 -14.48912 -14.12744 -14.07738 -13.88083 -13.36992 -13.11086 -12.94588 -12.47519 -12.29579 -12.28964 -11.87775 -11.78930 -11.67402 -11.40288 -11.11323 -10.96852 -10.91986 -10.71930 -10.56740 -10.14830 -10.10800 -9.86520 -9.44981 -9.11250 -8.97454 -8.49749 -8.37557 -6.01920 -4.04985 2.60103 3.29732 3.31341 3.37200 3.40653 3.48946 3.88295 3.94686 4.10888 4.30086 4.44463 4.49059 4.60866 4.72656 4.83305 5.01570 5.13697 5.23596 5.27002 5.33381 5.33885 5.37725 5.42134 5.46904 5.56070 5.61912 5.67828 5.72318 5.81380 6.07310 6.18430 6.33728 6.52747 6.62126 6.82969 7.01749 7.08559 7.64098 7.76674 7.97047 8.06580 8.37914 8.71874 9.01927 9.59198 11.09385 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047111 B = 0.002489 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.196646 B =11244.696753 C =11580.658881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.739 5.739 13 C 0.718 3.282 14 O -0.590 6.590 15 N -0.642 5.642 16 C 0.097 3.903 17 C -0.115 4.115 18 C -0.108 4.108 19 C -0.140 4.140 20 C 0.044 3.956 21 O -0.376 6.376 22 C 0.060 3.940 23 C 0.144 3.856 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.393 0.607 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -25.244 -0.832 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.393 5.393 13 C 0.420 3.580 14 O -0.468 6.468 15 N -0.382 5.382 16 C -0.026 4.026 17 C -0.153 4.153 18 C -0.109 4.109 19 C -0.178 4.178 20 C -0.033 4.033 21 O -0.294 6.294 22 C -0.017 4.017 23 C 0.020 3.980 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.450 -25.269 -0.721 27.354 hybrid contribution 0.683 1.198 -0.125 1.384 sum 11.133 -24.072 -0.846 26.535 Atomic orbital electron populations 1.69977 1.06052 1.26575 1.50655 1.25038 0.94861 0.99319 0.95311 0.86526 0.80028 0.83769 0.77599 1.19776 1.21008 1.20996 1.21237 0.93011 0.90921 1.50783 0.92607 1.19035 0.93856 0.90803 0.97716 1.21887 0.99789 0.93297 1.00803 1.21536 0.91294 0.84095 1.01928 1.45408 1.10513 1.04231 1.79177 1.15508 0.84269 0.80167 0.78028 1.90928 1.13689 1.83779 1.58394 1.47677 1.05723 1.05329 1.79511 1.22372 0.80618 0.98685 1.00975 1.22709 0.98509 0.92851 1.01206 1.22115 0.96093 0.95976 0.96712 1.22915 1.03403 0.93005 0.98500 1.23509 0.95840 0.95691 0.88255 1.89196 1.51729 1.31937 1.56577 1.23368 0.98281 0.85339 0.94704 1.21619 0.94863 0.78982 1.02526 0.92976 0.96223 0.96220 0.92775 0.92796 0.91924 0.91904 0.77309 0.90538 0.91337 0.89213 0.90000 0.89883 0.89760 0.88995 0.92058 0.91620 0.88639 0.91049 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.45 5.67 -4.04 -0.02 2.42 16 12 N -0.74 -11.24 5.52 -65.22 -0.36 -11.60 16 13 C 0.72 11.61 8.49 -86.93 -0.74 10.87 16 14 O -0.59 -12.04 16.67 5.28 0.09 -11.95 16 15 N -0.64 -7.59 3.34 -176.55 -0.59 -8.18 16 16 C 0.10 0.78 6.50 -2.32 -0.02 0.77 16 17 C -0.11 -0.74 5.77 -25.18 -0.15 -0.88 16 18 C -0.11 -0.76 0.81 -153.82 -0.12 -0.89 16 19 C -0.14 -0.81 6.40 -25.53 -0.16 -0.97 16 20 C 0.04 0.27 7.67 38.12 0.29 0.56 16 21 O -0.38 -3.26 11.66 -35.23 -0.41 -3.68 16 22 C 0.06 0.44 6.66 37.22 0.25 0.69 16 23 C 0.14 1.42 6.10 -3.60 -0.02 1.39 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.39 4.88 6.96 -40.82 -0.28 4.60 16 32 H 0.08 0.58 7.31 -51.93 -0.38 0.20 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.48 7.96 -51.93 -0.41 0.07 16 35 H 0.08 0.51 7.94 -51.93 -0.41 0.10 16 36 H 0.08 0.42 7.66 -51.93 -0.40 0.03 16 37 H 0.08 0.45 7.45 -51.93 -0.39 0.06 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.48 7.50 -51.93 -0.39 0.09 16 41 H 0.10 0.64 7.81 -51.93 -0.41 0.24 16 42 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 43 H 0.07 0.71 7.44 -51.93 -0.39 0.32 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -33.97 345.09 -8.93 -42.90 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.19 Total: -1.56 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.38 Total: -1.46 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.21 Total: -45.93 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.32 Total: -15.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.97 -8.93 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408244525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.313 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds