Wall clock time and date at job start Tue Mar 31 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00262 * 2 1 4 4 H 1.48502 * 109.46687 * 270.00023 * 3 2 1 5 5 H 1.48500 * 109.46933 * 29.99571 * 3 2 1 6 6 H 1.48496 * 109.47240 * 149.99757 * 3 2 1 7 7 C 1.37875 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00501 * 172.79288 * 7 2 1 9 9 C 1.50699 * 119.99760 * 352.78792 * 7 2 1 10 10 C 1.53008 * 115.54821 * 84.71825 * 9 7 2 11 11 N 1.46502 * 109.46978 * 39.51026 * 10 9 7 12 12 C 1.34775 * 119.99940 * 178.27775 * 11 10 9 13 13 O 1.21594 * 119.99816 * 0.27579 * 12 11 10 14 14 N 1.34776 * 119.99999 * 180.27539 * 12 11 10 15 15 C 1.46500 * 119.99630 * 180.02562 * 14 12 11 16 16 H 1.08995 * 109.47513 * 34.99750 * 15 14 12 17 17 C 1.53004 * 109.46843 * 274.99774 * 15 14 12 18 18 C 1.53005 * 109.46799 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47452 * 59.99952 * 18 17 15 20 20 C 1.52999 * 109.47233 * 300.00344 * 19 18 17 21 21 C 1.52995 * 109.47510 * 59.99722 * 20 19 18 22 22 H 1.09000 * 109.47119 * 59.99956 * 21 20 19 23 23 O 1.42896 * 109.47282 * 180.02562 * 21 20 19 24 24 C 1.52995 * 117.52278 * 230.41464 * 9 7 2 25 25 C 1.53000 * 117.50208 * 299.04781 * 9 7 2 26 26 H 0.96997 * 119.99703 * 5.02661 * 1 2 3 27 27 H 1.08997 * 109.46838 * 279.51426 * 10 9 7 28 28 H 1.08997 * 109.47236 * 159.51166 * 10 9 7 29 29 H 0.97003 * 119.99667 * 358.55213 * 11 10 9 30 30 H 0.96994 * 120.00323 * 0.02562 * 14 12 11 31 31 H 1.09003 * 109.47568 * 299.99981 * 17 15 14 32 32 H 1.08997 * 109.47369 * 60.00588 * 17 15 14 33 33 H 1.08995 * 109.47098 * 299.99694 * 18 17 15 34 34 H 1.08999 * 109.46949 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47072 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.46805 * 60.00027 * 19 18 17 37 37 H 1.09000 * 109.46966 * 299.99584 * 20 19 18 38 38 H 1.08999 * 109.47009 * 180.02562 * 20 19 18 39 39 H 0.96698 * 114.00305 * 299.99978 * 23 21 20 40 40 H 1.08997 * 117.50458 * 214.97076 * 24 9 7 41 41 H 1.09006 * 117.49583 * 359.97438 * 24 9 7 42 42 H 1.08992 * 117.49840 * 359.97401 * 25 9 7 43 43 H 1.08999 * 117.49975 * 144.99768 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0782 -1.1978 -0.1168 9 6 1.2600 -2.4939 0.1650 10 6 0.6749 -3.0861 -1.1188 11 7 1.6230 -2.8980 -2.2197 12 6 1.3338 -3.3743 -3.4469 13 8 0.2838 -3.9558 -3.6414 14 7 2.2084 -3.2060 -4.4584 15 6 1.8938 -3.7233 -5.7924 16 1 0.8229 -3.6327 -5.9740 17 6 2.3028 -5.1951 -5.8782 18 6 1.9748 -5.7352 -7.2716 19 6 2.7408 -4.9309 -8.3238 20 6 2.3318 -3.4590 -8.2379 21 6 2.6599 -2.9189 -6.8446 22 1 3.7307 -3.0096 -6.6626 23 8 2.2773 -1.5444 -6.7643 24 6 1.7702 -3.4716 1.2254 25 6 0.4715 -2.6975 1.4602 26 1 -0.4849 0.8368 -0.0736 27 1 -0.2625 -2.5833 -1.3566 28 1 0.4901 -4.1509 -0.9764 29 1 2.4606 -2.4340 -2.0644 30 1 3.0462 -2.7425 -4.3031 31 1 3.3738 -5.2859 -5.6966 32 1 1.7574 -5.7682 -5.1284 33 1 0.9040 -5.6446 -7.4536 34 1 2.2658 -6.7839 -7.3326 35 1 2.5074 -5.3159 -9.3164 36 1 3.8116 -5.0216 -8.1418 37 1 1.2609 -3.3683 -8.4199 38 1 2.8772 -2.8861 -8.9878 39 1 2.7245 -0.9737 -7.4041 40 1 1.6890 -4.5367 1.0086 41 1 2.6449 -3.1749 1.8042 42 1 0.4917 -1.8915 2.1936 43 1 -0.4640 -3.2534 1.3979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:34 Heat of formation + Delta-G solvation = -76.840471 kcal Electronic energy + Delta-G solvation = -22887.865606 eV Core-core repulsion = 19546.866344 eV Total energy + Delta-G solvation = -3340.999262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88290 -38.42827 -36.63496 -35.63991 -33.71704 -33.03081 -31.97324 -30.05414 -28.81524 -25.94137 -25.04370 -22.86857 -22.13590 -21.11092 -20.22633 -19.90008 -19.32626 -17.50812 -17.27825 -16.57289 -15.81958 -14.92449 -14.77650 -14.64570 -14.43574 -14.17528 -13.92748 -13.65397 -13.39428 -13.03196 -12.81250 -12.57079 -12.53782 -11.93000 -11.63318 -11.55488 -11.34637 -11.00165 -10.99562 -10.91324 -10.83769 -10.50346 -10.31409 -10.19103 -10.06711 -9.63317 -9.35996 -8.89507 -8.65740 -8.47422 -8.22212 -7.73130 -6.06085 -4.15227 3.26346 3.34517 3.35245 3.37247 3.95810 4.03787 4.36045 4.52854 4.63237 4.78963 5.01445 5.02317 5.07780 5.20877 5.24318 5.31154 5.33097 5.41422 5.54894 5.72517 5.83265 5.89674 5.97401 5.99865 6.11039 6.21499 6.30148 6.37910 6.55687 6.64831 6.77485 6.97827 6.99773 7.14462 7.41023 7.46427 7.56463 7.57792 7.78389 7.82274 8.37866 8.84904 8.91587 9.42145 9.51873 11.01619 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.004419 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.620816 B = 6334.523622 C = 7289.651308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.184 3.816 11 N -0.713 5.713 12 C 0.699 3.301 13 O -0.611 6.611 14 N -0.743 5.743 15 C 0.177 3.823 16 H 0.091 0.909 17 C -0.129 4.129 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.149 4.149 21 C 0.098 3.902 22 H 0.057 0.943 23 O -0.556 6.556 24 C -0.211 4.211 25 C -0.152 4.152 26 H 0.262 0.738 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.400 0.600 30 H 0.393 0.607 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.374 0.626 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -7.090 -14.929 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.029 3.971 10 C 0.060 3.940 11 N -0.366 5.366 12 C 0.399 3.601 13 O -0.491 6.491 14 N -0.398 5.398 15 C 0.070 3.930 16 H 0.109 0.891 17 C -0.168 4.168 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.187 4.187 21 C 0.038 3.962 22 H 0.075 0.925 23 O -0.360 6.360 24 C -0.248 4.248 25 C -0.190 4.190 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.236 0.764 30 H 0.226 0.774 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.221 0.779 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.189 -7.709 -14.495 17.545 hybrid contribution 1.519 1.669 -0.316 2.279 sum 7.707 -6.040 -14.812 17.756 Atomic orbital electron populations 1.69979 1.05944 1.26893 1.47580 1.24976 0.94734 0.98860 0.94136 0.86663 0.79954 0.83671 0.78158 1.20628 1.21182 1.19825 1.20265 0.92864 0.88650 1.52419 0.92222 1.19037 0.98173 0.93924 0.85991 1.20678 0.91506 0.96500 0.85332 1.45113 1.24132 1.59949 1.07416 1.16030 0.83336 0.79871 0.80840 1.90835 1.25433 1.49448 1.83422 1.44955 1.22582 1.63591 1.08652 1.20619 1.00833 0.91150 0.80369 0.89126 1.21962 1.01641 0.95650 0.97511 1.21540 1.00815 0.99249 0.94161 1.21515 1.00322 0.94420 0.99296 1.22242 1.02915 0.96823 0.96727 1.22090 0.97635 0.82109 0.94345 0.92499 1.86681 1.69881 1.17896 1.61582 1.23079 0.98323 0.95672 1.07767 1.22490 0.92544 1.01149 1.02843 0.92851 0.91918 0.94841 0.76427 0.77392 0.91857 0.90432 0.91495 0.91575 0.91639 0.91829 0.90749 0.91478 0.77941 0.91630 0.90483 0.89963 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.37 12.97 55.43 0.72 -23.65 16 2 C 0.08 2.07 5.39 -17.82 -0.10 1.97 16 3 Si 0.89 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.50 -12.96 7.40 -34.44 -0.25 -13.21 16 8 H 0.06 1.50 7.82 -52.48 -0.41 1.08 16 9 C 0.03 0.71 1.72 -155.66 -0.27 0.44 16 10 C 0.18 4.38 5.75 -4.04 -0.02 4.36 16 11 N -0.71 -15.34 5.36 -65.22 -0.35 -15.69 16 12 C 0.70 14.68 8.53 -86.92 -0.74 13.94 16 13 O -0.61 -14.89 16.01 5.28 0.08 -14.81 16 14 N -0.74 -12.12 4.95 -58.67 -0.29 -12.41 16 15 C 0.18 2.48 2.15 -67.93 -0.15 2.34 16 16 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 17 C -0.13 -1.54 5.50 -26.73 -0.15 -1.68 16 18 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 19 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 20 C -0.15 -1.27 5.54 -26.73 -0.15 -1.41 16 21 C 0.10 1.05 2.98 -26.73 -0.08 0.97 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 O -0.56 -6.83 13.18 -35.23 -0.46 -7.29 16 24 C -0.21 -4.53 9.88 -26.73 -0.26 -4.79 16 25 C -0.15 -3.55 9.51 -26.73 -0.25 -3.80 16 26 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 27 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 28 H 0.03 0.77 7.94 -51.93 -0.41 0.36 16 29 H 0.40 8.15 7.41 -40.82 -0.30 7.85 16 30 H 0.39 5.59 8.62 -40.82 -0.35 5.24 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.37 2.80 9.08 45.56 0.41 3.22 16 40 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 43 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -31.76 350.21 -9.29 -41.05 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -6.51 Total: 15.24 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.74 Total: -3.23 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.08 Total: -51.75 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.38 Total: -22.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.76 -9.29 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.787 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds